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• Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

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• PAML 4: phylogenetic analysis by maximum likelihood.

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  2001cited by this paper
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• STABILIZING SELECTION AND THE COMPARATIVE ANALYSIS OF ADAPTATION

  1997cited by this paper
• Among-site rate variation and its impact on phylogenetic analyses.

  1996cited by this paper
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  1996cited by this paper
• Markov chain Monte Carlo in Practice

  1996influential reference
• Inferring phylogenies from DNA sequences of unequal base compositions.

  1995cited by this paper
• Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods

  1994cited by this paper
• Spatial Statistics and Bayesian Computation

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• The comparative method in evolutionary biology

  1991cited by this paper
• Some probabilistic and statistical problems in the analysis of DNA sequences

  1986influential reference
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  1985cited by this paper
• Evolution of Protein Molecules

  1979cited by this paper
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