The Stepwise Increase in the Number of Transcription Factor Families in the Precambrian Predated the Diversification of Plants On Land.

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Molecular biology and evolution

• Publication date

  2016-08-07

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1093/MOLBEV/MSW155PMID 27499132
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Technological Innovations Give Rise to a New Era of Plant Evolutionary Developmental Biology

  2016cited by this paper
• Genomes and evolution of charophytes, bryophytes, lycophytes and ferns

  2016cited by this paper
• The advent of animals: The view from the Ediacaran

  2015cited by this paper
• Conserved regulatory mechanism controls the development of cells with rooting functions in land plants

  2015influential reference
• Bi-Force: large-scale bicluster editing and its application to gene expression data biclustering

  2014cited by this paper
• Contribution of NAC Transcription Factors to Plant Adaptation to Land

  2014influential reference
• Conflicting Phylogenies for Early Land Plants are Caused by Composition Biases among Synonymous Substitutions

  2014cited by this paper
• Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation

  2014cited by this paper
• A genome-wide survey of bHLH transcription factors in the Placozoan Trichoplax adhaerens reveals the ancient repertoire of this gene family in metazoan.

  2014cited by this paper
• Phylotranscriptomic analysis of the origin and early diversification of land plants

  2014cited by this paper
• Pfam: the protein families database

  2013cited by this paper
• PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

  2013cited by this paper
• Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages

  2013cited by this paper
• A bHLH complex controls embryonic vascular tissue establishment and indeterminate growth in Arabidopsis.

  2013cited by this paper
• Recruitment and remodeling of an ancient gene regulatory network during land plant evolution

  2013influential reference
• Editorial: NAR Surveys the Past, Present and Future of Restriction Endonucleases

  2013cited by this paper
• Evolution of homeobox genes

  2013influential reference
• Occam’s razor and probiotics activity on Listeria monocytogenes

  2012cited by this paper
• The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals

  2011influential reference
• Establishing a time-scale for plant evolution.

  2011influential reference
• Estimating the timing of early eukaryotic diversification with multigene molecular clocks

  2011influential reference
• Sequence and function of basic helix–loop–helix proteins required for stomatal development in Arabidopsis are deeply conserved in land plants

  2011influential reference
• Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

  2010cited by this paper
• The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa

  2010cited by this paper
• New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

  2010cited by this paper
• Early evolution of metazoan transcription factors.

  2009influential reference
• A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes

  2009influential reference
• Origin and Diversification of Basic-Helix-Loop-Helix Proteins in Plants

  2009cited by this paper
• The puzzle of plastid evolution.

  2009cited by this paper
• Genesis and expansion of metazoan transcription factor gene classes.

  2008cited by this paper
• Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics

  2007cited by this paper
• The Pfam protein families database

  2007cited by this paper
• Termination of asymmetric cell division and differentiation of stomata

  2007influential reference
• An Ancient Mechanism Controls the Development of Cells with a Rooting Function in Land Plants

  2007influential reference
• The deepest divergences in land plants inferred from phylogenomic evidence

  2006cited by this paper
• Evolutionary change of the numbers of homeobox genes in bilateral animals.

  2005cited by this paper
• The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists

  2005cited by this paper
• Increase in evenness and sampled alpha diversity through the Phanerozoic: Comparison of early Paleozoic and Cenozoic marine fossil assemblages

  2002cited by this paper
• Chance and necessity: the evolution of morphological complexity and diversity

  2001cited by this paper
• Multigene phylogeny of land plants with special reference to bryophytes and the earliest land plants.

  2000cited by this paper
• The origin of plants: body plan changes contributing to a major evolutionary radiation.

  2000influential reference
• EARLY EVOLUTION OF LAND PLANTS: Phylogeny, Physiology, and Ecology of the Primary Terrestrial Radiation

  1998cited by this paper
• The origin and early evolution of plants on land

  1997influential reference
• The origin and early diversification of land plants : a cladistic study

  1997influential reference

• Transcription Factor Analysis of Rhodophytes Suggests Trihelix Transcription Factors Across the Florideophyceae

  2025influential citation
• Evolution of sexual systems and regressive evolution in Riccia

  2025cites this paper
• Enhanced sensitivity of TAPscan v4 enables comprehensive analysis of streptophyte transcription factor evolution

  2024influential citation
• Metagenome-assembled genome of the glacier alga Ancylonema yields insights into the evolution of streptophyte life on ice and land.

  2024cites this paper
• A WUSCHEL-related homeobox transcription factor, SlWOX4, negatively regulates drought tolerance in tomato

  2024cites this paper
• Phylogeny and evolution of streptophyte algae

  2024cites this paper
• Many transcription factor families have evolutionarily conserved binding motifs in plants

  2024cites this paper
• Divergent evolution of a thermospermine-dependent regulatory pathway in land plants.

  2024cites this paper
• The Mp ANT‐Auxin Loop Modulates Marchantia polymorpha Development

  2024cites this paper
• Convergent evolution of water-conducting cells in Marchantia recruited the ZHOUPI gene promoting cell wall reinforcement and programmed cell death.

  2024cites this paper
• Integration of the Plant-Specific PLATZ Transcription Factors into Gene Regulatory Networks Controlling Developmental Processes

  2024cites this paper
• A critical role of a plant-specific TFIIB-related protein, BRP1, in salicylic acid-mediated immune response

  2024cites this paper
• Phylogenetic analysis of bHLH classes III and IV in land plants and their algal relatives.

  2023cites this paper
• MpTGA, together with MpNPR, regulates sexual reproduction and independently affects oil body formation in Marchantia polymorpha.

  2023cites this paper
• Control of stem cell behavior by CLE–JINGASA signaling in the shoot apical meristem in Marchantia polymorpha

  2023cites this paper
• A bHLH heterodimer regulates germ cell differentiation in land plant gametophytes.

  2023cites this paper
• Transcription factors operate on a limited vocabulary of binding motifs in Arabidopsis thaliana

  2023cites this paper
• Control of stem cell behavior by CLE-JINGASA signaling in the shoot apical meristem in Marchantia polymorpha.

  2023cites this paper
• Evolutionary Consequences of Functional and Regulatory Divergence of HD-Zip I Transcription Factors as a Source of Diversity in Protein Interaction Networks in Plants

  2023cites this paper
• Liverwort bHLH transcription factors and the origin of stomata in plants.

  2023cites this paper
• Assembling animals: trees, genomes, cells, and contrast to plants

  2023cites this paper
• Evolution and diversification of the ACT-like domain associated with plant basic helix–loop–helix transcription factors

  2023cites this paper
• Genome-Wide Characterization and Expression Analysis of Transcription Factor Families in Desert Moss Syntrichia caninervis under Abiotic Stresses

  2023cites this paper
• Stomatal regulators are co-opted for seta development in the astomatous liverwort Marchantia polymorpha

  2023cites this paper
• Origin, Expansion, and Divergence of ETHYLENE-INSENSITIVE 3 (EIN3)/EIN3-LIKE Transcription Factors During Streptophytes Evolution

  2022cites this paper
• Evolution of meristem zonation by CLE gene duplication in land plants

  2022cites this paper
• KANADI promotes thallus differentiation and FR‐induced gametangiophore formation in the liverwort Marchantia

  2022cites this paper
• Predicted landscape of RETINOBLASTOMA-RELATED LxCxE-mediated interactions across the Chloroplastida.

  2022cites this paper
• Full Title: Evolution is in the details: Regulatory differences in modern human and Neanderthal Short title: Regulatory differences in modern human and Neanderthal

  2022cites this paper
• Stress, senescence, and specialized metabolites in bryophytes

  2022cites this paper
• Chromosome-level reference genome of tetraploid Isoetes sinensis provides insights into evolution and adaption of lycophytes

  2022cites this paper
• Evolution of the DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN subfamily in green plants.

  2022cites this paper
• The origin of a land flora.

  2022cites this paper
• Evolution of osmosensing OSCA1 Ca2+ channel family coincident with plant transition from water to land

  2022cites this paper
• The evolutionary emergence of land plants.

  2021cites this paper
• Early “Rootprints” of Plant Terrestrialization: Selaginella Root Development Sheds Light on Root Evolution in Vascular Plants

  2021cites this paper
• Regulation of gametangia and gametangiophore initiation in the liverwort Marchantia polymorpha

  2021cites this paper
• Molecular mechanisms involved in functional macroevolution of plant transcription factors.

  2020cites this paper
• Evo-physio: on stress responses and the earliest land plants

  2020cites this paper
• The hornwort genome and early land plant evolution

  2020cites this paper
• Systematic tools for reprogramming plant gene expression in a simple model, Marchantia polymorpha

  2020cites this paper
• Oil body formation in Marchantia polymorpha is controlled by MpC1HDZ and serves as a defense against arthropod herbivores

  2020cites this paper
• Plant Science's Next Top Models.

  2020cites this paper
• Insights into the Diversification and Evolution of R2R3-MYB Transcription Factors in Plants1

  2020cites this paper
• Molecular evolution and diversification of the GRF transcription factor family

  2020cites this paper
• Evolution is in the details: Regulatory differences in modern human and Neanderthal

  2020cites this paper
• The Hornworts: Morphology, evolution and development.

  2020cites this paper
• The WOX family transcriptional regulator SlLAM1 controls compound leaf and floral organ development in Solanum lycopersicum

  2020cites this paper
• Evolutionary Significance of RAV Family in 25 Plants from Chlorophyta to Angiospermae

  2020cites this paper
• Title . Origin and evolution of eukaryotic transcription factors

  2020cites this paper
• MpFEW RHIZOIDS1 miRNA-Mediated Lateral Inhibition Controls Rhizoid Cell Patterning in Marchantia polymorpha.

  2020cites this paper
• Evolutionary significance of amino acid permease transporters in 17 plants from Chlorophyta to Angiospermae

  2019cites this paper
• Independent evolution of lateral inhibition mechanisms in different lineages of land plants: MpFEW RHIZOIDS1 miRNA-mediated lateral inhibition controls rhizoid cell patterning in Marchantia polymorpha

  2019cites this paper
• Gene expression data support the hypothesis that Isoetes rootlets are true roots and not modified leaves

  2019cites this paper
• Evolution of ABA signaling pathways

  2019cites this paper
• A conserved chloroplast retrograde signal regulates stomatal closure for drought tolerance in plants

  2019cites this paper
• The Origin of Land Plants Is Rooted in Two Bursts of Genomic Novelty.

  2019cites this paper
• Mesostigma viride Genome and Transcriptome Provide Insights into the Origin and Evolution of Streptophyta

  2019cites this paper
• The Genome of the Charophyte Alga Penium margaritaceum Bears Footprints of the Evolutionary Origins of Land Plants

  2019cites this paper
• Neofunctionalisation of basic helix loop helix proteins occurred when plants colonised the land

  2019influential citation
• Building new insights in plant gametogenesis from an evolutionary perspective

  2019cites this paper
• The Elaboration of miRNA Regulation and Gene Regulatory Networks in Plant–Microbe Interactions

  2019cites this paper
• Neofunctionalisation of basic helix-loop-helix proteins occurred when embryophytes colonised the land.

  2019cites this paper
• Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land

  2019cites this paper
• Genome-wide analysis of MpBHLH12, a IIIf basic helix-loop-helix transcription factor of Marchantia polymorpha

  2019cites this paper
• A Phylogenetic Study of the ANT Family Points to a preANT Gene as the Ancestor of Basal and euANT Transcription Factors in Land Plants

  2019influential citation
• Evolution of the plant body plan.

  2019cites this paper
• The evolution of root branching: increasing the level of plasticity.

  2019cites this paper
• Something ancient and something neofunctionalized-evolution of land plant hormone signaling pathways.

  2019cites this paper
• Insights into Land Plant Evolution Garnered from the <em>Marchantia polymorpha</em> Genome

  2019influential citation
• One thousand plant transcriptomes and the phylogenomics of green plants

  2019cites this paper
• Origin and evolution of eukaryotic transcription factors.

  2019cites this paper
• The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.

  2018cites this paper
• Plant evolution: landmarks on the path to terrestrial life.

  2018cites this paper
• Evolutionary history of HOMEODOMAIN LEUCINE ZIPPER transcription factors during plant transition to land.

  2018cites this paper
• The antagonistic basic helix-loop-helix partners BEE and IBH1 contribute to control plant tolerance to abiotic stress.

  2018cites this paper
• What have we learnt from studying the evolution of the arbuscular mycorrhizal symbiosis?

  2018cites this paper
• Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome

  2018influential citation
• Conserved redox‐dependent DNA binding of ROXY glutaredoxins with TGA transcription factors

  2017cites this paper
• Transcriptional control of photosynthetic capacity: conservation and divergence from Arabidopsis to rice.

  2017cites this paper
• Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae

  2017cites this paper
• Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

  2017influential citation
• Evolution of jasmonate biosynthesis and signaling mechanisms.

  2016cites this paper