S. Kelly

Response to Tcherkez and Farquhar: Rubisco adaptation is more limited by phylogenetic constraint than by catalytic trade-off
202328 citationsauthor #2
Photosynthesis and food security: the evolving story of C4 rice
202326 citationsauthor #2
Transposable elements contribute to the establishment of the glycine shuttle in Brassicaceae species
20238 citationsauthor #10
Rubisco is evolving for improved catalytic efficiency and CO2 assimilation in plants
202338 citationsauthor #3
Ten years (and counting) of Biology Open.
20222 citationsauthor #1
A single promoter‐TALE system for tissue‐specific and tuneable expression of multiple genes in rice
202217 citationsauthor #16
The Evolutionary Constraints on Angiosperm Chloroplast Adaptation
202228 citationsauthor #2
Ten Years of Collaborative Progress in the Quest for Orthologs
202138 citationsauthor #47
Conditional Stomatal Closure in a Fern Shares Molecular Features with Flowering Plant Active Stomatal Responses
202116 citationsauthor #3
1 Title : The Coordination and Jumps along C 4 Photosynthesis Evolution in the Genus Flaveria
20210 citationsauthor #3
SHOOT: phylogenetic gene search and ortholog inference
202152 citationsauthor #2
Finding the C4 sweet spot: cellular compartmentation of carbohydrate metabolism in C4 photosynthesis
202116 citationsauthor #2
The coordination of major events in C4 photosynthesis evolution in the genus Flaveria
202112 citationsauthor #3
NO GAMETOPHORES 2 is a novel regulator of the 2D to 3D growth transition in the moss Physcomitrium patens
202012 citationsauthor #2
The Quest for Orthologs benchmark service and consensus calls in 2020
202041 citationsauthor #16
The economics of endosymbiotic gene transfer and the evolution of organellar genomes
20204 citationsauthor #1
Multiple Metabolic Innovations and Losses Are Associated with Major Transitions in Land Plant Evolution.
202053 citationsauthor #5
VSG mRNA levels are regulated by the production of functional VSG protein
202011 citationsauthor #2
A role for neutral variation in the evolution of C4 photosynthesis
20205 citationsauthor #16
The economics of organellar gene loss and endosymbiotic gene transfer
202046 citationsauthor #1
Installation of C4 photosynthetic pathway enzymes in rice using a single construct
2020101 citationsauthor #15
Transcriptome, proteome and draft genome of Euglena gracilis
2019119 citationsauthor #24
Proteome of the secondary plastid of Euglena gracilis reveals metabolic quirks and colourful history
20198 citationsauthor #3
Subdivision of Light Signaling Networks Contributes to Partitioning of C4 Photosynthesis1[OPEN]
20199 citationsauthor #2
Development of honey, vegetable oil, flour, and collagen stable isotope reference materials
20190 citationsauthor #3
Neofunctionalisation of basic helix loop helix proteins occurred when plants colonised the land
20190 citationsauthor #5
Neofunctionalisation of basic helix-loop-helix proteins occurred when embryophytes colonised the land.
201917 citationsauthor #5
OrthoFinder: phylogenetic orthology inference for comparative genomics
20195,659 citationsauthor #2
A taxonomic monograph of Ipomoea integrated across phylogenetic scales
201991 citationsauthor #13
Metabolic quirks and the colourful history of the Euglena gracilis secondary plastid.
201955 citationsauthor #3
Gene expression data support the hypothesis that Isoetes rootlets are true roots and not modified leaves
201913 citationsauthor #3
Blue light, but not red, stimulates assembly of photosystem II in etiolated maize
20190 citationsauthor #2
Editorial overview: Harvesting the fruits of plant genomics.
20191 citationsauthor #1
Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to Polynesia.
2018129 citationsauthor #12
Somatic hybridization provides segregating populations for the identification of causative mutations in sterile mutants of the moss Physcomitrella patens.
201813 citationsauthor #2
Subdivision of light signalling networks contributes to cellular partitioning of C4 photosynthesis in maize
20180 citationsauthor #2
The molecular evolution of C4 photosynthesis: opportunities for understanding and improving the world's most productive plants.
201827 citationsauthor #2
Gene Duplication Accelerates the Pace of Protein Gain and Loss from Plant Organelles
201810 citationsauthor #3
Codon choice directs constitutive mRNA levels in trypanosomes
201865 citationsauthor #2
Multiplex Fluorescent, Activity-Based Protein Profiling Identifies Active α-Glycosidases and Other Hydrolases in Plants1[OPEN]
201825 citationsauthor #4
Genetic Regulation of the 2D to 3D Growth Transition in the Moss Physcomitrella patens
201862 citationsauthor #2
STAG: Species Tree Inference from All Genes
2018281 citationsauthor #2
Author response: Codon choice directs constitutive mRNA levels in trypanosomes
20180 citationsauthor #2
Multiple mechanisms for enhanced plasmodesmata density in disparate subtypes of C4 grasses
201837 citationsauthor #4
The Amount of Nitrogen Used for Photosynthesis Modulates Molecular Evolution in Plants
201836 citationsauthor #1
The Coordination and Jumps along C4 Photosynthesis Evolution in the Genus Flaveria
20185 citationsauthor #5
OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations
201723 citationsauthor #2
The amount of nitrogen used for photosynthesis governs molecular evolution in plants
20170 citationsauthor #1
Candidate regulators of Early Leaf Development in Maize Perturb Hormone Signalling and Secondary Cell Wall Formation When Constitutively Expressed in Rice
201719 citationsauthor #16
Transcriptome Sequence of the Bloodstream Form of Trypanoplasma borreli, a Hematozoic Parasite of Fish Transmitted by Leeches
20176 citationsauthor #5
Genome Sequence of Phytomonas françai, a Cassava (Manihot esculenta) Latex Parasite
20176 citationsauthor #3
Transcriptional control of photosynthetic capacity: conservation and divergence from Arabidopsis to rice.
201754 citationsauthor #3
STRIDE: Species Tree Root Inference from Gene Duplication Events
2017240 citationsauthor #2
Functional PTB phosphate transporters are present in streptophyte algae and early diverging land plants.
201720 citationsauthor #9
An Alternative Strategy for Trypanosome Survival in the Mammalian Bloodstream Revealed through Genome and Transcriptome Analysis of the Ubiquitous Bovine Parasite Trypanosoma (Megatrypanum) theileri
201730 citationsauthor #1
Wide sampling of natural diversity identifies novel molecular signatures of C4 photosynthesis
20174 citationsauthor #1
Unlocking the biological potential of Euglena gracilis: evolution, cell biology and significance to parasitism
20175 citationsauthor #23
Clust: automatic extraction of optimal co-expressed gene clusters from gene expression data
2017154 citationsauthor #2
Engineering biosynthesis of high-value compounds in photosynthetic organisms
201718 citationsauthor #2
Euglena gracilis Genome and Transcriptome: Organelles, Nuclear Genome Assembly Strategies and Initial Features.
201740 citationsauthor #4
Characterization of RBP9 and RBP10, two developmentally regulated RNA-binding proteins in Trypanosoma brucei
201720 citationsauthor #2
Genome sequencing reveals metabolic and cellular interdependence in an amoeba-kinetoplastid symbiosis
201752 citationsauthor #17
Erratum to: OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations
20171 citationsauthor #2
Evolution of the endomembrane systems of trypanosomatids – conservation and specialisation
201721 citationsauthor #6
1 Title : 1 Wide sampling of natural diversity identifies novel molecular signatures of C 4 2 photosynthesis 3 4
20170 citationsauthor #1
The transcriptome, extracellular proteome and active secretome of agroinfiltrated Nicotiana benthamiana uncover a large, diverse protease repertoire
201775 citationsauthor #2
Simultaneous clustering of multiple heterogeneous gene expression datasets
20170 citationsauthor #2
Description of Phytomonas oxycareni n. sp. from the Salivary Glands of Oxycarenus lavaterae.
201732 citationsauthor #5
OMGene: mutual improvement of gene models through optimisation of evolutionary conservation
20175 citationsauthor #2
Selection-driven cost-efficiency optimization of transcripts modulates gene evolutionary rate in bacteria
201729 citationsauthor #2
Marchantia and liverwort systematics
20160 citationsauthor #8
Simulating topological domains in human chromosomes with a fitting-free model
20166 citationsauthor #5
The Mechanism Forming the Cell Surface of Tip-Growing Rooting Cells Is Conserved among Land Plants
2016113 citationsauthor #6
Simulated binding of transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and topological domains
2016168 citationsauthor #3
Correction: Deep Evolutionary Comparison of Gene Expression Identifies Parallel Recruitment of Trans-Factors in Two Independent Origins of C4 Photosynthesis
20165 citationsauthor #2
RSL Class I Genes Controlled the Development of Epidermal Structures in the Common Ancestor of Land Plants
2016112 citationsauthor #6
Dietary nitrogen alters codon bias and genome composition in parasitic microorganisms
201662 citationsauthor #2
The Stepwise Increase in the Number of Transcription Factor Families in the Precambrian Predated the Diversification of Plants On Land.
201680 citationsauthor #4
Genome of Leptomonas pyrrhocoris: a high-quality reference for monoxenous trypanosomatids and new insights into evolution of Leishmania
201680 citationsauthor #13
Independent and Parallel Evolution of New Genes by Gene Duplication in Two Origins of C4 Photosynthesis Provides New Insight into the Mechanism of Phloem Loading in C4 Species
201661 citationsauthor #4
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
20153,002 citationsauthor #2
Two forward genetic screens for vein density mutants in sorghum converge on a cytochrome P450 gene in the brassinosteroid pathway.
201533 citationsauthor #17
RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications
201542 citationsauthor #3
Phytomonas: Trypanosomatids Adapted to Plant Environments
201570 citationsauthor #4
C 4 Photosynthesis in the Rice Paddy : Insights from the Noxious Weed Echinochloa glabrescens 1 [ OPEN ]
20158 citationsauthor #5
TransRate: reference-free quality assessment of de novo transcriptome assemblies
2015740 citationsauthor #5
Correction: Phytomonas: Trypanosomatids Adapted to Plant Environments
20155 citationsauthor #4
Comparative Life Cycle Transcriptomics Revises Leishmania mexicana Genome Annotation and Links a Chromosome Duplication with Parasitism of Vertebrates
2015104 citationsauthor #2
Exon Skipping Is Correlated with Exon Circularization.
2015328 citationsauthor #1
Title Corresponding Author
20150 citationsauthor #5
Splicing of many human genes involves sites embedded within introns
201538 citationsauthor #1
An Ancestral Role for CONSTITUTIVE TRIPLE RESPONSE1 Proteins in Both Ethylene and Abscisic Acid Signaling1[OPEN]
201549 citationsauthor #3
C4 Photosynthesis in the Rice Paddy: Insights from the Noxious Weed Echinochloa glabrescens1[OPEN]
201530 citationsauthor #5
Evolution of interplay between the nuclear pore complex, nuclear basket, and the mitotic spindle
20140 citationsauthor #3
Nuclear pore complex evolution: a trypanosome Mlp analogue functions in chromosomal segregation but lacks transcriptional barrier activity
201437 citationsauthor #7
Shared origins of a key enzyme during the evolution of C4 and CAM metabolism
201486 citationsauthor #7
Deep Evolutionary Comparison of Gene Expression Identifies Parallel Recruitment of Trans-Factors in Two Independent Origins of C4 Photosynthesis
2014166 citationsauthor #2
Phylogenetic trees do not reliably predict feature diversity
201492 citationsauthor #1
A draft genome for the African crocodilian trypanosome Trypanosoma grayi
201443 citationsauthor #1
Touching from a distance
201418 citationsauthor #3

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