Adaptation to warmer climates by parallel functional evolution of CBF genes in Arabidopsis thaliana

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Molecular Ecology

• Publication date

  2016-08-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/mec.13711PMID 27247130
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes

  2016cited by this paper
• Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication

  2016cited by this paper
• Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network.

  2015influential reference
• Towards the identification of the loci of adaptive evolution

  2015cited by this paper
• "Missing" G x E Variation Controls Flowering Time in Arabidopsis thaliana

  2015cited by this paper
• Alleles versus mutations: Understanding the evolution of genetic architecture requires a molecular perspective on allelic origins

  2015cited by this paper
• Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana1[OPEN]

  2015cited by this paper
• Natural variation in the C-repeat binding factor cold response pathway correlates with local adaptation of Arabidopsis ecotypes.

  2015influential reference
• Deeply diverged alleles in the Arabidopsis AREB1 transcription factor drive genome-wide differences in transcriptional response to the environment.

  2015cited by this paper
• QTL mapping of freezing tolerance: links to fitness and adaptive trade‐offs

  2014influential reference
• R: A language and environment for statistical computing.

  2014cited by this paper
• A Functional and Evolutionary Perspective on Transcription Factor Binding in Arabidopsis thaliana[C][W]

  2014cited by this paper
• Convergent Evolution During Local Adaptation to Patchy Landscapes

  2014influential reference
• Variation in MPK12 affects water use efficiency in Arabidopsis and reveals a pleiotropic link between guard cell size and ABA response

  2014cited by this paper
• Gene duplication as a driver of plant morphogenetic evolution.

  2014cited by this paper
• Genetics of Drought Adaptation in Arabidopsis

  2014cited by this paper
• Modeling the Influence of Genetic and Environmental Variation on the Expression of Plant Life Cycles across Landscapes

  2014cited by this paper
• Natural variation of C-repeat-binding factor (CBFs) genes is a major cause of divergence in freezing tolerance among a group of Arabidopsis thaliana populations along the Yangtze River in China.

  2013influential reference
• MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

  2013cited by this paper
• Global Patterns of Groundwater Table Depth

  2013cited by this paper
• A major QTL controlling deep rooting on rice chromosome 4

  2013cited by this paper
• Global Patterns of Groundwater Table Depth

  2013cited by this paper
• Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana

  2013cited by this paper
• Reciprocal transplants demonstrate strong adaptive differentiation of the model organism Arabidopsis thaliana in its native range.

  2012influential reference
• Characterizing genomic variation of Arabidopsis thaliana: the roles of geography and climate

  2012cited by this paper
• Clinal variation in the non-acclimated and cold-acclimated freezing tolerance of Arabidopsis thaliana accessions.

  2012cited by this paper
• The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

  2011cited by this paper
• A Map of Local Adaptation in Arabidopsis thaliana

  2011cited by this paper
• Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway1

  2010cited by this paper
• Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

  2010cited by this paper
• A Quantitative Survey of Local Adaptation and Fitness Trade‐Offs

  2009cited by this paper
• The Harmonized World Soil Database

  2009cited by this paper
• Relaxed selection on the CBF/DREB1 regulatory genes and reduced freezing tolerance in the southern range of Arabidopsis thaliana.

  2008cited by this paper
• Standard and generalized McDonald–Kreitman test: a website to detect selection by comparing different classes of DNA sites

  2008cited by this paper
• Genetics of Drought Adaptation in Arabidopsis thaliana II. Qtl Analysis of a New Mapping Population, Kas-1 × Tsu-1

  2008cited by this paper
• A Meta-Analysis of Local Adaptation in Plants

  2008cited by this paper
• Climate change mitigation: a spatial analysis of global land suitability for Clean Development Mechanism afforestation and reforestation

  2008cited by this paper
• Natural Selection Along an Environmental Gradient: A Classic Cline in Mouse Pigmentation

  2008cited by this paper
• Native range genetic variation in Arabidopsis thaliana is strongly geographically structured and reflects Pleistocene glacial dynamics

  2007cited by this paper
• vegan : Community Ecology Package. R package version 1.8-5

  2007cited by this paper
• Natural Genetic Variation of Freezing Tolerance in Arabidopsis[W][OA]

  2006influential reference
• Soft sweeps II--molecular population genetics of adaptation from recurrent mutation or migration.

  2006influential reference
• A Single Amino Acid Mutation Contributes to Adaptive Beach Mouse Color Pattern

  2006cited by this paper
• Genetic and Molecular Analyses of Natural Variation Indicate CBF2 as a Candidate Gene for Underlying a Freezing Tolerance Quantitative Trait Locus in Arabidopsis

  2005cited by this paper
• Multiple hydrophobic motifs in Arabidopsis CBF1 COOH-terminus provide functional redundancy in trans-activation

  2005influential reference
• Published online in Wiley InterScience (www.interscience.wiley.com). DOI: 10.1002/joc.1276 VERY HIGH RESOLUTION INTERPOLATED CLIMATE SURFACES FOR GLOBAL LAND AREAS

  2005cited by this paper
• Genetic and Molecular Analyses of Natural Variation Indicate CBF2 as a Candidate Gene for Underlying a Freezing Tolerance Quantitative Trait Locus in Arabidopsis1[w]

  2005cited by this paper
• Genomic scans for selective sweeps using SNP data.

  2005cited by this paper
• Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks

  2004cited by this paper
• Derivation of pasture biomass in Mongolia from AVHRR-based vegetation health indices

  2004cited by this paper
• Cold Induction of Arabidopsis CBF Genes Involves Multiple ICE (Inducer of CBF Expression) Promoter Elements and a Cold-Regulatory Circuit That Is Desensitized by Low Temperature1

  2003cited by this paper
• Fertility capability soil classification: a tool to help assess soil quality in the tropics

  2003cited by this paper
• A high-resolution data set of surface climate over global land areas

  2002cited by this paper
• So what's new in the field of plant cold acclimation? Lots!

  2001cited by this paper
• Arabidopsis thaliana and its wild relatives: a model system for ecology and evolution

  2001cited by this paper
• Natural selection in the wild.

  2000cited by this paper
• Global Distribution of Plant-Extractable Water Capacity of Soil (Dunne)

  2000cited by this paper
• Median-joining networks for inferring intraspecific phylogenies.

  1999cited by this paper
• The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration.

  1999cited by this paper
• Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.

  1998cited by this paper
• Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.

  1997cited by this paper
• The NCEP/NCAR 40-Year Reanalysis Project

  1996cited by this paper
• GLOBAL DISTRIBUTION OF PLANT‐EXTRACTABLE WATER CAPACITY OF SOIL

  1996cited by this paper
• The hitch-hiking effect of a favourable gene.

  1974cited by this paper
• Evolution in Changing Environments

  1968cited by this paper
• Evolution in Changing Environments: Some Theoretical Explorations. (MPB-2)

  1968cited by this paper

• Differentiation for drought strategy but conserved plasticity to heat and drought in locally adapted populations of Arabidopsis thaliana

  2026cites this paper
• Unlocking genetic diversity in Colombian cassava landraces for accelerated breeding.

  2026cites this paper
• Predicting Gene Expression Responses to Cold in Arabidopsis thaliana Using Natural Variation in DNA Sequence

  2025cites this paper
• Museum Genomics Reveals Temporal Genetic Stasis and Global Genetic Diversity in Arabidopsis thaliana

  2025cites this paper
• iTRAQ-Based Proteomic Analysis Reveals Molecular Pathways in Potato Cold Stress Response

  2025cites this paper
• Functional Insights into Dispensable Genes using Genome-Wide Loss-of-Function Burden Tests in Arabidopsis

  2025cites this paper
• Museum genomics reveals temporal genetic stasis and global genetic diversity in Arabidopsis thaliana

  2025cites this paper
• Phylogenomic and comparative genome analysis of the Juglandaceae family reveals black walnut (Juglans nigra) as an ancient lineage of the Rhysocaryon section

  2025cites this paper
• Environmental genome-wide association studies across precipitation regimes reveal that the E3 ubiquitin ligase MBR1 regulates plant adaptation to rainy environments

  2024cites this paper
• Low frequency of the wild-type freezing-tolerance LsCBF7 allele among lettuce population suggests a negative selection during domestication and breeding

  2024influential citation
• Predicting gene expression responses to environment in Arabidopsis thaliana using natural variation in DNA sequence

  2024cites this paper
• Functional Evolution of Pseudofabraea citricarpa as an Adaptation to Temperature Change

  2024cites this paper
• Genotype-environment association across precipitation regimens reveals the mechanism of plant adaptation to rainy environments

  2024cites this paper
• Ecological genetics of local adaptation in Arabidopsis: An 8‐year field experiment

  2023cites this paper
• Cis- and Trans-variations of Stearoyl-CoA Desaturase Provide New Insights into the Mechanisms of Diverged Pattern of Phenotypic Plasticity for Temperature Adaptation in Two Congeneric Oyster Species

  2023cites this paper
• Landscape transcriptomics as a tool for addressing global change effects across diverse species

  2023cites this paper
• Climate biogeography of Arabidopsis thaliana: linking distribution models and individual variation

  2023cites this paper
• Integrative analysis of physiology and genomics provides insights into freeze tolerance adaptations of Acacia koa along an elevational cline.

  2023cites this paper
• AP2/EREBP Pathway Plays an Important Role in Chaling Wild Rice Tolerance to Cold Stress

  2023cites this paper
• A large-effect fitness trade-off across environments is explained by a single mutation affecting cold acclimation

  2023cites this paper
• Genotype-environment associations to reveal the molecular basis of environmental adaptation.

  2022cites this paper
• Climate biogeography of Arabidopsis thaliana : linking distribution models , individual performance , and life history

  2022cites this paper
• Distinct Cold Acclimation of Productivity Traits in Arabidopsis thaliana Ecotypes

  2022cites this paper
• Potential and limits of (mal)adaptive mutation rate plasticity in plants.

  2022cites this paper
• Transcriptomic and proteomic mechanisms underlying cold tolerance in plants

  2022cites this paper
• Patterns of pan‐genome occupancy and gene coexpression under water‐deficit in Brachypodium distachyon

  2022cites this paper
• Temperature-induced dynamics of plant carbohydrate metabolism.

  2021cites this paper
• The population genomics of adaptive loss of function

  2021cites this paper
• Nothing in Evolution Makes Sense Except in the Light of Biology

  2021cites this paper
• Patterns of gene co-expression under water-deficit treatments and pan-genome occupancy in Brachypodium distachyon

  2021cites this paper
• Genotype‐dependent contribution of CBF transcription factors to long‐term acclimation to high light and cool temperature

  2021cites this paper
• In the presence of population structure: From genomics to candidate genes underlying local adaptation

  2020cites this paper
• The Genetic Basis of Plant Functional Traits and the Evolution of Plant-Environment Interactions

  2020cites this paper
• Linking genomic signatures of selection to expression variation and direct evidence of local adaptation

  2020cites this paper
• The cold response regulator CBF1 promotes Arabidopsis hypocotyl growth at ambient temperatures

  2020cites this paper
• Indications for a Central Role of Hexokinase Activity in Natural Variation of Heat Acclimation in Arabidopsis thaliana

  2020cites this paper
• Metabolic Reprogramming and Its Role in Plant Cold Acclimation

  2019cites this paper
• Competition-by-drought interactions change phenotypic plasticity and the direction of selection on Arabidopsis traits

  2019cites this paper
• Lineage‐specific adaptation to climate involves flowering time in North American Arabidopsis lyrata

  2019cites this paper
• In the presence of population structure: From genomics to candidate genes underlying local adaptation

  2019cites this paper
• Genetic and physiological mechanisms of freezing tolerance in locally adapted populations of a winter annual

  2019cites this paper
• Ecoevolutionary Dynamics of Carbon Cycling in the Anthropocene.

  2018cites this paper
• Detecting the genomic signal of polygenic adaptation and the role of epistasis in evolution

  2018cites this paper
• Gene Regulatory Networks Mediating Cold Acclimation: The CBF Pathway.

  2018cites this paper
• Leaf Vasculature and the Upper Limit of Photosynthesis

  2018cites this paper
• Drought adaptation in nature by extensive genetic loss-of-function

  2018cites this paper
• Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function

  2018influential citation
• Influence of intergenotypic competition on multigenerational persistence of abiotic stress resistance transgenes in populations of Arabidopsis thaliana

  2018cites this paper
• Optimization of Photosynthetic Productivity in Contrasting Environments by Regulons Controlling Plant Form and Function

  2018cites this paper
• Identification of genes from the ICE–CBF–COR pathway under cold stress in Aegilops–Triticum composite group and the evolution analysis with those from Triticeae

  2018influential citation
• Topological features of a gene co-expression network predict patterns of natural diversity in environmental response

  2017cites this paper
• Genome-wide analysis of UDP-glycosyltransferase super family in Brassica rapa and Brassica oleracea reveals its evolutionary history and functional characterization

  2017cites this paper
• Acclimation of Swedish and Italian ecotypes of Arabidopsis thaliana to light intensity

  2017cites this paper
• Transgenerational effects of mild heat in Arabidopsis thaliana show strong genotype specificity that is explained by climate at origin.

  2017cites this paper
• Genetic costs of domestication and improvement

  2017cites this paper
• Advances in physiological and molecular aspects of plant cold tolerance

  2017cites this paper
• Topological features of gene regulatory networks predict patterns of natural diversity in environmental response

  2016cites this paper
• Habitat Temperature and Precipitation of Arabidopsis thaliana Ecotypes Determine the Response of Foliar Vasculature, Photosynthesis, and Transpiration to Growth Temperature

  2016cites this paper