Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Molecular Ecology

• Publication date

  2016-01-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/mec.13476PMID 26576498
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Should the Mantel test be used in spatial analysis?

  2015cited by this paper
• Local Adaptation by Alleles of Small Effect*

  2015influential reference
• Detecting Genomic Signatures of Natural Selection with Principal Component Analysis: Application to the 1000 Genomes Data

  2015influential reference
• Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation.

  2015cited by this paper
• A practical guide to environmental association analysis in landscape genomics

  2015cited by this paper
• The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

  2015cited by this paper
• Fast principal components analysis reveals convergent evolution of ADH1B gene in Europe and East Asia

  2015cited by this paper
• Biological Fitness and the Fundamental Theorem of Natural Selection

  2015cited by this paper
• Genome scan methods against more complex models: when and how much should we trust them?

  2014cited by this paper
• Isolation by environment

  2014cited by this paper
• Detecting genotypic changes associated with selective mortality at sea in Atlantic salmon: polygenic multilocus analysis surpasses genome scan.

  2014cited by this paper
• Microgeographic adaptation and the spatial scale of evolution.

  2014cited by this paper
• Advances and limits of using population genetics to understand local adaptation.

  2014cited by this paper
• Landscape structure and genetic architecture jointly impact rates of niche evolution

  2014influential reference
• Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests

  2014cited by this paper
• Using genomics to characterize evolutionary potential for conservation of wild populations

  2014cited by this paper
• Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

  2013cited by this paper
• The effect of population structure on the rate of evolution

  2013cited by this paper
• Mantel test in population genetics

  2013cited by this paper
• Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics

  2013cited by this paper
• INTEGRATING LANDSCAPE GENOMICS AND SPATIALLY EXPLICIT APPROACHES TO DETECT LOCI UNDER SELECTION IN CLINAL POPULATIONS

  2013influential reference
• Reserve Size and Fragmentation Alter Community Assembly, Diversity, and Dynamics

  2013cited by this paper
• Chirostyloidea(十脚目: 異尾類)の系統発生に関する注釈を伴うイエティガニ(Kiwaidae)の生物地理学

  2013cited by this paper
• Weak impact of fine‐scale landscape heterogeneity on evolutionary potential in Arabidopsis lyrata

  2013cited by this paper
• Improved Eigenanalysis of Discrete Subpopulations and Admixture Using the Minimum Average Partial Test

  2012cited by this paper
• The trouble with isolation by distance

  2012cited by this paper
• Genomic signature of natural and anthropogenic stress in wild populations of the waterflea Daphnia magna: validation in space, time and experimental evolution

  2012cited by this paper
• Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

  2012cited by this paper
• The genetic differentiation at quantitative trait loci under local adaptation

  2012cited by this paper
• Characterizing genomic variation of Arabidopsis thaliana: the roles of geography and climate

  2012cited by this paper
• Robust Identification of Local Adaptation from Allele Frequencies

  2012cited by this paper
• Species range expansion by beneficial mutations

  2011cited by this paper
• Adaptation and Evolutionary Rescue in Metapopulations Experiencing Environmental Deterioration

  2011cited by this paper
• PCNM: PCNM spatial eigenfunction and principal coordinate analyses

  2011influential reference
• Theoretical Perspectives on the Statics and Dynamics of Species’ Borders in Patchy Environments

  2011cited by this paper
• THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION–SELECTION BALANCE

  2011cited by this paper
• cdpop: A spatially explicit cost distance population genetics program

  2010cited by this paper
• Why is adaptation prevented at ecological margins? New insights from individual-based simulations.

  2010cited by this paper
• Using Environmental Correlations to Identify Loci Underlying Local Adaptation

  2010cited by this paper
• Overrun by the neighbors: landscape context affects strength and sign of local adaptation.

  2010cited by this paper
• Genetic markers in the playground of multivariate analysis

  2009influential reference
• Toward a Selection Theory of Molecular Evolution

  2008cited by this paper
• Forward selection of explanatory variables.

  2008cited by this paper
• vegan : Community Ecology Package. R package version 1.8-5

  2007influential reference
• The multifarious effects of dispersal and gene flow on contemporary adaptation

  2007cited by this paper
• A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation

  2007cited by this paper
• The ecodist Package for Dissimilarity-based Analysis of Ecological Data

  2007cited by this paper
• Genetic Polymorphism in Heterogeneous Environments: The Age of Genomics

  2006cited by this paper
• Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria

  2006cited by this paper
• Principal components analysis corrects for stratification in genome-wide association studies

  2006cited by this paper
• Population Structure and Eigenanalysis

  2006cited by this paper
• SPATIAL ANALYSIS OF LANDSCAPES: CONCEPTS AND STATISTICS

  2005cited by this paper
• Distinguishing Between Selective Sweeps and Demography Using DNA Polymorphism Data

  2005cited by this paper
• Models for the analysis of species' response to environmental gradients

  2004cited by this paper
• Observations on the genetic structure and mating system of ponderosa pine in the Colorado front range

  2004cited by this paper
• Conceptual issues in local adaptation

  2004cited by this paper
• Community Patterns in Source‐Sink Metacommunities

  2003cited by this paper
• Gene flow and the limits to natural selection

  2002influential reference
• Fitness effects of advantageous mutations in evolving Escherichia coli populations.

  2001cited by this paper
• EASYPOP (version 1.7): a computer program for population genetics simulations.

  2001cited by this paper
• RULE: Map Generation and a Spatial Analysis Program

  1999cited by this paper
• GENETIC MODELS OF ADAPTATION AND GENE FLOW IN PERIPHERAL POPULATIONS

  1997cited by this paper
• Evolution of a Species' Range

  1997cited by this paper
• The Coexistence of Species in Fractal Landscapes

  1992cited by this paper
• Analysis of adaptation in heterogeneous landscapes: Implications for the evolution of fundamental niches

  1992cited by this paper
• The Evolution of Species?

  1987cited by this paper
• Models for the analysis of species’ response to environmental gradients

  1987cited by this paper
• The analysis of vegetation-environment relationships by canonical correspondence analysis

  1987cited by this paper
• GENETIC POLYMORPHISM IN HETEROGENEOUS ENVIRONMENTS: A DECADE LATER

  1986cited by this paper
• Gene flow past a cline

  1979cited by this paper
• Redundancy analysis an alternative for canonical correlation analysis

  1977cited by this paper
• Genetic Polymorphism in Heterogeneous Environments

  1976cited by this paper
• The theoretical population genetics of variable selection and migration.

  1976cited by this paper
• Gene flow and selection in a two-locus system.

  1975cited by this paper
• Conditions for the existence of clines.

  1975cited by this paper
• Gene Flow and Population Differentiation

  1973cited by this paper
• Gene flow and selection in a cline.

  1973influential reference
• Copper tolerance in some Californian populations of the monkey flower, Mimulus guttatus

  1971cited by this paper
• GRADIENT ANALYSIS OF VEGETATION*

  1967cited by this paper
• Population structure and human evolution

  1966cited by this paper
• Animal species and evolution.

  1964cited by this paper
• An Ordination of the Upland Forest Communities of Southern Wisconsin

  1957cited by this paper
• A mathematical theory of natural and artificial selection. (Part VI, Isolation.)

  1930cited by this paper

• Genomics of rafting crustaceans reveals adaptation to climate change in tropical oceans.

  2026cites this paper
• Detecting local adaptation under weak genetic structure in an endemic damselfly: an integrative eco-evolutionary approach

  2026cites this paper
• Climate-Smart Forestry and Its Strong Correlation with Forest Genetic Resources: Current State and Future Actions

  2026cites this paper
• Development and Application of Novel SSR Markers to Assess the Genetic Diversity and Population Structure of Phacelia secunda Along an Altitudinal Gradient in the Central Chile Andes

  2025cites this paper
• Harnessing landscape genomics to evaluate genomic vulnerability and future climate resilience in an East Asia perennial

  2025cites this paper
• Identifying the Degree of Gene Reuse During Repeated Adaptation

  2025cites this paper
• Gene-ecological studies of critically isolated fern Pteris dentata Forssk.: genetic diversity, environmental adaptation, and future distribution modeling (SDM)

  2025cites this paper
• Analytical Review on Improving Coconut Production and Management Practices in Fiji

  2025cites this paper
• Genomic signatures of habitat isolation and paleo-climate unveil the “island-like” pattern in the glasshouse plant Rheum nobile

  2025cites this paper
• Foliar spectral signatures reveal adaptive divergence in live oaks (Quercus section Virentes) across species and environmental niches

  2025cites this paper
• Genomic signatures of selection in drug metabolizing genes across cattle populations

  2025cites this paper
• Population genomic landscapes and insights for conservation of the critically endangered island-endemic Chinese pangolin in Taiwan

  2025influential citation
• Synergistic Effects of Microenvironmental Heterogeneity and Propagule Pressure Drive the Adaptive Expansion of a Wetland Invasive Plant in an Arid Region

  2025cites this paper
• Genetic Consequences of Tree Planting Versus Natural Colonisation: Implications for Afforestation Programmes in the United Kingdom

  2025cites this paper
• Genome-wide association study (GWAS) provides insights into the genomic basis of reproduction-related traits in Chouardia litardierei (Asparagaceae)

  2025cites this paper
• Effects of Landscape Compositional Heterogeneity and Spatial Autocorrelation on Environmental Niche and Dispersal in Simulated Organisms

  2025cites this paper
• Contribution of Range‐Wide and Short‐Scale Chemical Soil Variation to Local Adaptation in a Tropical Montane Forest Tree

  2025cites this paper
• Locally Specific Genome‐Wide Signatures of Adaptation to Environmental Variation at High Resolution in an Alpine Plant

  2025cites this paper
• Local adaptation has a role in reducing vulnerability to climate change in a widespread Amazonian forest lizard

  2025cites this paper
• Integrating Geostatistical Approaches into Landscape Genetics: Assessing Spatial Patterns of Genetic Variation in Fern Species Pteridium aquilinum (L.) Kuhn and Pteris cretica L.

  2025cites this paper
• Genetic parallelism underlying repeated bill divergence in the Island Scrub-jay (Aphelocoma insularis) increases at higher genetic levels of organization.

  2025cites this paper
• Environmental Variation Influences Genome Evolution in Hispaniolan Trunk Anoles (Anolis distichus)

  2025influential citation
• Summer rainfall drives adaptation with gene flow in a widespread butterfly

  2025cites this paper
• Geography and Environment Shape Spatial Genetic Variation and Predict Climate Maladaptation Across Isolated and Disjunct Populations of Pinus muricata

  2025cites this paper
• Hybridization mitigates climate change risk in mountainous birds

  2025cites this paper
• Genome‐Wide Adaptation to a Complex Environmental Gradient in a Keystone Phytoplankton Species

  2025cites this paper
• Some results of ecological selection of lawn grasses

  2025cites this paper
• Circadian rhythm and redox homeostasis candidate genes showed association with shallow elevation in Norway spruce

  2024cites this paper
• Concordant Signal of Genetic Variation Across Marker Densities in the Desert Annual Chylismia brevipes Is Linked With Timing of Winter Precipitation

  2024cites this paper
• Optimising Sampling Design for Landscape Genomics

  2024influential citation
• Climatic fluctuations, geographic features, and evolutionary forces: Shaping high genomic diversity and local adaptation in Muntiacus reevesi

  2024cites this paper
• Deep learning insights into distinct patterns of polygenic adaptation across human populations

  2024cites this paper
• The structure of the environment influences the patterns and genetics of local adaptation

  2024cites this paper
• Genetic and epigenetic differentiation in response to genomic selection for avian lay date

  2024cites this paper
• Integrating very high resolution environmental proxies in genotype–environment association studies

  2024cites this paper
• A lack of genetic diversity and minimal adaptive evolutionary divergence in introduced Mysis shrimp after 50 years

  2024cites this paper
• Local adaptation to an altitudinal gradient: the interplay between mean phenotypic trait variation and phenotypic plasticity in Mimulus laciniatus

  2024cites this paper
• Phylogenomics of American pika (Ochotona princeps) lineage diversification.

  2024cites this paper
• Abiotic Stress Tolerance Boosted by Genetic Diversity in Plants

  2024cites this paper
• Putative climate adaptation in American pikas (Ochotona princeps) is associated with copy number variation across environmental gradients

  2024cites this paper
• Geo-evolutionary feedbacks: integrating rapid evolution and landscape change.

  2024cites this paper
• Geography, altitude, agriculture, and hypoxia

  2024cites this paper
• Genetic diversity and local adaption of alfalfa populations (Medicago sativa L.) under long-term grazing

  2023cites this paper
• Natural hybridization reduces vulnerability to climate change

  2023cites this paper
• Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling

  2023cites this paper
• The paradox of adaptive trait clines with nonclinal patterns in the underlying genes

  2023cites this paper
• Effects of compositional heterogeneity and spatial autocorrelation on richness and diversity in simulated landscapes

  2023cites this paper
• : Local adaptation to an altitudinal gradient: the interplay between constitutive trait variation

  2023cites this paper
• Local adaptation of a marine diatom is governed by genome-wide changes in diverse metabolic processes

  2023cites this paper
• The WZA: A window-based method for characterizing genotype-environment association.

  2023cites this paper
• Multilocus environmental adaptation and population structure in the Cerrado gecko Gymnodactylus amarali (Sauria, Phyllodactylidae) from Serra da Mesa Hydroelectric Plant, Central Brazil

  2023cites this paper
• Environment predicts the maintenance of reproductive isolation in a mosaic hybrid zone of rubber rabbitbrush

  2023cites this paper
• The holocentric chromosome microevolution: From phylogeographic patterns to genomic associations with environmental gradients

  2023cites this paper
• Tropical forest loss and geographic location drive the functional genomic diversity of an endangered palm tree

  2023cites this paper
• Redesigning crop varieties to win the race between climate change and food security.

  2023cites this paper
• Local adaptation to an altitudinal gradient: the interplay between mean phenotypic trait variation and phenotypic plasticity in Mimulus laciniatus

  2023cites this paper
• Historical DNA reveals climate adaptation in an endangered songbird

  2023cites this paper
• Spatial autocorrelation of the environment influences the patterns and genetics of local adaptation

  2023cites this paper
• Alpine burrow-sharing mammals and birds show similar population-level climate change risks

  2023cites this paper
• Responses of population structure and genomic diversity to climate change and fishing pressure in a pelagic fish

  2023cites this paper
• Conservation genomics of an endangered montane amphibian reveals low population structure, low genomic diversity and selection pressure from disease

  2023influential citation
• Multi-locus genomic signatures of local adaptation to snow across the landscape in California populations of a willow leaf beetle

  2023cites this paper
• Responsiveness to long days for flowering is reduced in Arabidopsis by yearly variation in growing season temperatures.

  2023cites this paper
• Rapid evolutionary divergence of a songbird population following recent colonization of an urban area

  2022cites this paper
• Weaving place‐based knowledge for culturally significant species in the age of genomics: Looking to the past to navigate the future

  2022cites this paper
• Using landscape genomics to delineate future adaptive potential for climate change in the Yosemite toad (Anaxyrus canorus)

  2022cites this paper
• Effects of Vertically Heterogeneous Soil Salinity on Genetic Polymorphism and Productivity of the Widespread Halophyte Bassia prostrata

  2022cites this paper
• Re-thinking the environment in landscape genomics.

  2022cites this paper
• Implications of climate change on a floodplain shrub: associations between genomic and environmental variation

  2022cites this paper
• Landscape Genomics in Tree Conservation Under a Changing Environment

  2022cites this paper
• Interactions between microenvironment, selection and genetic architecture drive multiscale adaptation in a simulation experiment

  2022cites this paper
• Whole‐genome sequencing illuminates multifaceted targets of selection to humic substances in Eurasian perch

  2022influential citation
• Population genetic differentiation and genomic signatures of adaptation to climate in an abundant lizard

  2022cites this paper
• Natural hybridisation reduces vulnerability to climate change

  2022cites this paper
• Improving Coconut Using Modern Breeding Technologies: Challenges and Opportunities

  2022influential citation
• Neo‐sex chromosome evolution and phenotypic differentiation across an elevational gradient in horned larks (Eremophila alpestris)

  2022influential citation
• The combination of genomic offset and niche modelling provides insights into climate change-driven vulnerability

  2022cites this paper
• Genome–Environment Associations, an Innovative Tool for Studying Heritable Evolutionary Adaptation in Orphan Crops and Wild Relatives

  2022cites this paper
• Population genomics and geographic dispersal in Chagas disease vectors: Landscape drivers and evidence of possible adaptation to the domestic setting

  2022cites this paper
• Linking evolutionary potential to extinction risk: applications and future directions

  2022cites this paper
• Simulation Tests of Methods in Evolution, Ecology, and Systematics: Pitfalls, Progress, and Principles.

  2022cites this paper
• Genomic stock structure of the marine teleost tarakihi (Nemadactylus macropterus) provides evidence of fine-scale adaptation and a temperature-associated cline amid panmixia

  2022cites this paper
• Evolution of an Amazonian Fish Is Driven by Allopatric Divergence Rather Than Ecological Divergence

  2022cites this paper
• Using gridCoal to assess whether standard population genetic theory holds in the presence of spatio‐temporal heterogeneity in population size

  2022cites this paper
• Geographic distance, landscape heterogeneity and migratory connectivity influence population genetic structure of farmland-dependent wintering birds and their conservation

  2022cites this paper
• A generalist–specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range

  2022cites this paper
• Finding the adaptive needles in a population‐structured haystack: A case study in a New Zealand mollusc

  2022cites this paper
• Species–genetic diversity correlations through the lens of spatial autocorrelation: insights from high Andean wetlands

  2022cites this paper
• Landscape Genomics Provides Evidence of Ecotypic Adaptation and a Barrier to Gene Flow at Treeline for the Arctic Foundation Species Eriophorum vaginatum

  2022cites this paper
• Genotype-environment associations to reveal the molecular basis of environmental adaptation.

  2022cites this paper
• Genetics, Landscape

  2022cites this paper
• Climate adaptation and vulnerability of foundation species in a global change hotspot

  2022cites this paper
• Habitat‐linked genetic variation supports microgeographic adaptive divergence in an island‐endemic bird species

  2022cites this paper
• Genomic signatures of demographic declines in an imperiled amphibian inform conservation action

  2021cites this paper
• Genome‐environment association methods comparison supports omnigenic adaptation to ecological niche in malaria vector mosquitoes

  2021cites this paper
• Testing for parallel genomic and epigenomic footprints of adaptation to urban life in a passerine bird

  2021influential citation
• The genomic basis of domestic colonisation and dispersal in Chagas disease vectors

  2021cites this paper
• Using gradient Forest to predict climate response and adaptation in Cork oak

  2021cites this paper
• Adaptive and nonadaptive causes of heterogeneity in genetic differentiation across the Mimulus guttatus genome

  2021cites this paper
• Prospects and limitations of genomic offset in conservation management

  2021cites this paper