Sex determination and differentiation genes in a functional hermaphrodite scallop, Nodipecten subnodosus.

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Marine Genomics

• Publication date

  2017-11-24

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/j.margen.2017.11.004PMID 29239804
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Near-optimal probabilistic RNA-seq quantification

  2016cited by this paper
• GOplot: an R package for visually combining expression data with functional analysis

  2015cited by this paper
• RNA Sequencing and Analysis.

  2015cited by this paper
• Deep sequencing of the mantle transcriptome of the great scallop Pecten maximus.

  2014cited by this paper
• Gonad transcriptome analysis of pearl oyster Pinctada margaritifera: identification of potential sex differentiation and sex determining genes

  2014cited by this paper
• Cg-SoxE and Cg-β-catenin, two new potential actors of the sex-determining pathway in a hermaphrodite lophotrochozoan, the Pacific oyster Crassostrea gigas.

  2014cited by this paper
• "Male Development of Chromosomally Female Mice Transgenic for Sry gene" (1991), by Peter Koopman, et al.

  2014cited by this paper
• Trimmomatic: a flexible trimmer for Illumina sequence data

  2014cited by this paper
• Genomic Analysis of the Pacific Oyster (Crassostrea gigas) Reveals Possible Conservation of Vertebrate Sex Determination in a Mollusc

  2014cited by this paper
• De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

  2013cited by this paper
• Molecular cloning and characterization of SoxB2 gene from Zhikong scallop Chlamys farreri

  2013cited by this paper
• Transcriptome Sequencing of Zhikong Scallop (Chlamys farreri) and Comparative Transcriptomic Analysis with Yesso Scallop (Patinopecten yessoensis)

  2013cited by this paper
• High-Resolution Linkage and Quantitative Trait Locus Mapping Aided by Genome Survey Sequencing: Building Up An Integrative Genomic Framework for a Bivalve Mollusc

  2013cited by this paper
• Identification of Male Gametogenesis Expressed Genes from the Scallop Nodipecten subnodosus by Suppressive Subtraction Hybridization and Pyrosequencing

  2013cited by this paper
• Oyster sex determination is influenced by temperature - first clues in spat during first gonadic differentiation and gametogenesis.

  2013cited by this paper
• MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

  2013cited by this paper
• The highly conserved LAMMER/CLK2 protein kinases prevent germ cell overproliferation in Drosophila.

  2013cited by this paper
• Gigabase-Scale Transcriptome Analysis on Four Species of Pearl Oysters

  2013cited by this paper
• Identification of a tubulin-α gene specifically expressed in testis and adductor muscle during stable reference gene selection in the hermaphrodite gonad of the lion's paw scallop Nodipecten subnodosus.

  2012cited by this paper
• Identification and Characterization of the Sex-Determiner Transformer-2 Homologue in Chinese Shrimp, Fenneropenaeus chinensis

  2012cited by this paper
• Primer3—new capabilities and interfaces

  2012cited by this paper
• The oyster genome reveals stress adaptation and complexity of shell formation

  2012cited by this paper
• Dmrt genes in the development and evolution of sexual dimorphism.

  2012cited by this paper
• Sexually dimorphic expression of foxl2 during gametogenesis in scallop Chlamys farreri, conserved with vertebrates

  2012cited by this paper
• Identification of Genes Potentially Related to Biomineralization and Immunity by Transcriptome Analysis of Pearl Sac in Pearl Oyster Pinctada martensii

  2012cited by this paper
• HMMER web server: interactive sequence similarity searching

  2011cited by this paper
• Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data

  2011cited by this paper
• RNA sequencing: advances, challenges and opportunities

  2011cited by this paper
• Sex determination and sexual differentiation in the avian model

  2011cited by this paper
• Transcriptome Sequencing and De Novo Analysis for Yesso Scallop (Patinopecten yessoensis) Using 454 GS FLX

  2011cited by this paper
• Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

  2011cited by this paper
• An integer linear programming approach for finding deregulated subgraphs in regulatory networks

  2011cited by this paper
• eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

  2011cited by this paper
• VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

  2011cited by this paper
• KEGG for integration and interpretation of large-scale molecular data sets

  2011cited by this paper
• SignalP 4.0: discriminating signal peptides from transmembrane regions

  2011cited by this paper
• Molecular Cloning and Expression Characterization of Dmrt2 in Akoya Pearl Oysters, Pinctada martensii

  2011cited by this paper
• The Pfam protein families database

  2011cited by this paper
• Gene ontology analysis for RNA-seq: accounting for selection bias

  2010cited by this paper
• Sry: the master switch in mammalian sex determination

  2010cited by this paper
• Sex determination: genetic models for oysters.

  2010cited by this paper
• De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

  2010cited by this paper
• A novel Dmrt gene is specifically expressed in the testis of Chinese mitten crab, Eriocheir sinensis

  2010cited by this paper
• Sex determination in Drosophila: The view from the top

  2010cited by this paper
• Cloning,characterization and expression analysis of Cf-dmrt4-like gene in Chlamys farreri

  2010cited by this paper
• edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

  2009cited by this paper
• Sfrp1 and Sfrp2 are required for normal male sexual development in mice.

  2009cited by this paper
• Molecular cloning and gene expression of Cg-Foxl2 during the development and the adult gametogenetic cycle in the oyster Crassostrea gigas.

  2009cited by this paper
• Identification and expression of a factor of the DM family in the oyster Crassostrea gigas.

  2009cited by this paper
• Open Access Method

  2009cited by this paper
• Sexual dimorphic expression of DMRT1 and Sox9a during gonadal differentiation and hormone‐induced sex reversal in the teleost fish Nile tilapia (Oreochromis niloticus)

  2008cited by this paper
• Loss of Wnt4 and Foxl2 leads to female-to-male sex reversal extending to germ cells.

  2007cited by this paper
• RNAmmer: consistent and rapid annotation of ribosomal RNA genes

  2007cited by this paper
• The Pfam protein families database

  2007cited by this paper
• Expression of Sox9, Mis, and Dmrt1 in the gonad of a species with temperature‐dependent sex determination

  2007cited by this paper
• Sexually dimorphic expression of secreted frizzled‐related (SFRP) genes in the developing mouse Müllerian duct

  2006cited by this paper
• X-Chromosome dosage compensation.

  2005cited by this paper
• Construction of AFLP-based genetic linkage map for Zhikong scallop, Chlamys farreri Jones et Preston and mapping of sex-linked markers

  2005cited by this paper
• Identification of two teleost homologs of the Drosophila sex determination factor, transformer-2 in medaka (Oryzias latipes).

  2004cited by this paper
• Characterization of the isoforms of MOVO zinc finger protein, a mouse homologue of Drosophila Ovo, as transcription factors.

  2004cited by this paper
• Functional analysis of Sox8 and Sox9 during sex determination in the mouse

  2004cited by this paper
• Molecular cloning, characterization, and expression in brain and gonad of Dmrt5 of zebrafish.

  2004cited by this paper
• MUSCLE: multiple sequence alignment with high accuracy and high throughput.

  2004cited by this paper
• Wnt4 is required for proper male as well as female sexual development.

  2004cited by this paper
• Reproduction of the lion's paw scallop Nodipecten subnodosus sowerby, 1835 (Bivalvia: Pectinidae) from Laguna Ojo de Liebre, B.C.S., México

  2004cited by this paper
• A DM domain protein from a coral, Acropora millepora, homologous to proteins important for sex determination

  2003cited by this paper
• Pbx1 is essential for adrenal development and urogenital differentiation

  2003cited by this paper
• Growth and gametogenesis in the lion-paw scallop Nodipecten (Lyropecten) subnodosus

  2003cited by this paper
• Identification and analysis of mutations in bob, Doa and eight new genes required for oocyte specification and development in Drosophila melanogaster.

  2003cited by this paper
• Histological characterization of the spawning process in the catarina scallop, Argopecten ventricosus (Sowerby II, 1842) induced by thermal shock and serotonin injection

  2003cited by this paper
• Novel paralogy relations among human chromosomes support a link between the phylogeny of doublesex-related genes and the evolution of sex determination.

  2002cited by this paper
• Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

  2001cited by this paper
• Family differences in success of triploid induction and effects of triploidy on fecundity of catarina scallop (Argopecten ventricosus)

  2001cited by this paper
• Mab-3 is a direct tra-1 target gene regulating diverse aspects of C. elegans male sexual development and behavior.

  2000cited by this paper
• Gene Ontology: tool for the unification of biology

  2000cited by this paper
• Triploid catarina scallop (Argopecten ventricosus Sowerby II, 1842): growth, gametogenesis, and suppression of functional hermaphroditism

  2000cited by this paper
• The LAMMER protein kinase encoded by the Doa locus of Drosophila is required in both somatic and germline cells and is expressed as both nuclear and cytoplasmic isoforms throughout development.

  2000cited by this paper
• Dmrt1, a gene related to worm and fly sexual regulators, is required for mammalian testis differentiation.

  2000cited by this paper
• Expression of Dmrt1 in the genital ridge of mouse and chicken embryos suggests a role in vertebrate sexual development.

  1999cited by this paper
• Female development in mammals is regulated by Wnt-4 signalling

  1999cited by this paper
• From head to toes: the multiple facets of Sox proteins.

  1999cited by this paper
• GENETIC DETERMINANTS OF PROTANDRIC SEX IN THE PACIFIC OYSTER, CRASSOSTREA GIGAS THUNBERG

  1998cited by this paper
• The nuclear hormone receptor SEX-1 is an X-chromosome signal that determines nematode sex

  1998cited by this paper
• sFRP‐2 is a target of the Wnt‐4 signaling pathway in the developing metanephric kidney

  1998cited by this paper
• Expression of murine novel zinc finger proteins highly homologous to Drosophila ovo gene product in testis

  1998cited by this paper
• Evidence for evolutionary conservation of sex-determining genes

  1998cited by this paper
• Protein phosphorylation plays an essential role in the regulation of alternative splicing and sex determination in Drosophila.

  1998cited by this paper
• virilizer regulates Sex-lethal in the germline of Drosophila melanogaster.

  1998cited by this paper
• Sexual differentiation in decapod crustaceans: role of the androgenic gland

  1997cited by this paper
• A male-specific role for SOX9 in vertebrate sex determination.

  1996cited by this paper
• Sox9 expression during gonadal development implies a conserved role for the gene in testis differentiation in mammals and birds

  1996cited by this paper
• The gene virilizer is required for female-specific splicing controlled by Sxl, the master gene for sexual development in Drosophila.

  1995cited by this paper
• Controlling the false discovery rate: a practical and powerful approach to multiple testing

  1995cited by this paper
• Genital tract and oocytic pathway during spawning in Pecten maximum (Molluscs, Bivalvia)

  1995cited by this paper
• ovo, a Drosophila gene required for ovarian development, is specifically expressed in the germline and shares most of its coding sequences with shavenbaby, a gene involved in embryo patterning.

  1995cited by this paper
• The Doa locus encodes a member of a new protein kinase family and is essential for eye and embryonic development in Drosophila melanogaster.

  1994cited by this paper
• The Drosophila doublesex proteins share a novel zinc finger related DNA binding domain.

  1993cited by this paper
• The temperature-sensitive mutation virts(virilizer) identifies a new gene involved in sex determination of Drosophila

  1991cited by this paper
• Regulation of doublesex pre-mRNA processing occurs by 3'-splice site activation.

  1991cited by this paper
• Control of doublesex alternative splicing by transformer and transformer-2 in Drosophila

  1991cited by this paper

• Genome-wide identification of FTZ-F1 genes in Chlamys farreri and analysis of ChIP-seq-based binding sites and potential target genes.

  2025cites this paper
• Integrated yeast one-hybrid and molecular docking reveal the binding specificity of FTZ-F1 to GnRHR and Dmrta2 promoters in the scallop, Chlamys farreri.

  2025cites this paper
• HSP mRNA sequences and their expression under different thermal oscillation patterns and heat stress in two populations of Nodipecten subnodosus

  2024cites this paper
• Temperature regulates Hsdmrt1 and Hsfoxl2 to affect gonadal development of the freshwater mussel Hyriopsis schlegelii

  2024cites this paper
• Gonadal transcriptome analysis of genes related to sex differentiation and sex development in the Pomacea canaliculata.

  2024cites this paper
• Triploid-induced complete sterility in the scallop Nodipecten subnodosus might be triggered by an early and sustained DNA damage response

  2022cites this paper
• Dynamic transcriptome analysis reveals the gene network of gonadal development from the early history life stages in dwarf surfclam Mulinia lateralis

  2022cites this paper
• Full-Length Transcriptome Sequences Provide Insight Into Hermaphroditism of Freshwater Pearl Mussel Hyriopsis schlegelii

  2022cites this paper
• Transcriptomic analyses of hermaphroditic gonads at different stages revealing candidate genes for sex differentiation and gonad growth/maturation in QN Orange scallops

  2022cites this paper
• Gonadal transcriptomes associated with sex phenotypes provide potential male and female candidate genes of sex determination or early differentiation in Crassostrea gigas, a sequential hermaphrodite mollusc

  2021cites this paper
• Integrated mRNA and miRNA expression profile analysis of female and male gonads in Hyriopsis cumingii

  2021cites this paper
• Sexual Development of the Hermaphroditic Scallop Argopecten irradians Revealed by Morphological, Endocrine and Molecular Analysis

  2021cites this paper
• Identification and Functional Analysis of the Sex-Determiner Transformer-2 Homologue in the Freshwater Pearl Mussel, Hyriopsis cumingii

  2021cites this paper
• Identification and Characterization of Gene SpDMRT99B and Its Sex-Biased Expression Profile in the Mud Crab, Scylla paramamosain

  2021cites this paper
• The Karyotype of the Pacific Lion-Paw Scallop Nodipecten subnodosus (Sowerby, 1835)

  2020cites this paper
• Comparative transcriptome analysis of three gonadal development stages reveals potential genes involved in gametogenesis of the fluted giant clam (Tridacna squamosa)

  2020cites this paper
• Gonad transcriptome of golden mussel Limnoperna fortunei reveals potential sex differentiation genes

  2019cites this paper
• Phenotypic Stability of Sex and Expression of Sex Identification Markers in the Adult Yesso Scallop Mizuhopecten yessoensis throughout the Reproductive Cycle

  2019cites this paper
• Transcriptomic analysis of Pacific white shrimp (Litopenaeus vannamei, Boone 1931) in response to acute hepatopancreatic necrosis disease caused by Vibrio parahaemolyticus

  2019cites this paper
• Potential involvement of a DMRT family member ( Mr‐Dsx ) in the regulation of sexual differentiation and moulting in the giant river prawn Macrobrachium rosenbergii

  2019cites this paper
• Effects of the Tetraploid Condition on Gamete Size and on Testis Versus Ovary Allocation in the True Functional Hermaphroditic Scallop Argopecten ventricosus (Sowerby II, 1842)

  2017cites this paper