The Structure of Bacterial RNA Polymerase

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• Publication year

  2005

• Venue

  Unknown venue

• Publication date

  Unknown publication date

• Fields of study

  Biology, Chemistry

• Identifiers
  DOI 10.1128/9781555817640.CH15
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase.

  2003cited by this paper
• In vitro studies of transcript initiation by Escherichia coli RNA polymerase. 3. Influences of individual DNA elements within the promoter recognition region on abortive initiation and promoter escape.

  2003cited by this paper
• RNA polymerase holoenzyme: structure, function and biological implications.

  2003cited by this paper
• Functional interaction between RNA polymerase alpha subunit C-terminal domain and sigma70 in UP-element- and activator-dependent transcription.

  2003cited by this paper
• Tethering σ70 to RNA polymerase reveals high in vivo activity of σ factors and σ70-dependent pausing at promoter-distal locations

  2003cited by this paper
• Unified two‐metal mechanism of RNA synthesis and degradation by RNA polymerase

  2003influential reference
• TFIIS and GreB : Two Like-Minded

  2003cited by this paper
• Downstream DNA Sequence Effects on Transcription Elongation

  2003cited by this paper
• An intersubunit contact stimulating transcription initiation by E coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4.

  2003cited by this paper
• Visualizing RNA extrusion and DNA wrapping in transcription elongation complexes of bacterial and eukaryotic RNA polymerases.

  2003cited by this paper
• Bacterial RNA polymerases: the wholo story.

  2003cited by this paper
• Functional Interaction between RNA Polymerase α Subunit C-Terminal Domain and σ70 in UP-Element- and Activator-Dependent Transcription

  2003cited by this paper
• Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates.

  2002influential reference
• Conformational Flexibility in ς70 Region 2 during Transcription Initiation*

  2002cited by this paper
• Structural Basis of Transcription Initiation: An RNA Polymerase Holoenzyme-DNA Complex

  2002influential reference
• Conformational flexibility in sigma70 region 2 during transcription initiation.

  2002cited by this paper
• Structural Basis of Transcription Activation: The CAP-αCTD-DNA Complex

  2002cited by this paper
• Structural Basis of Transcription Initiation: RNA Polymerase Holoenzyme at 4 Å Resolution

  2002influential reference
• Determinants of the C-Terminal Domain of the Escherichia coli RNA Polymerase α Subunit Important for Transcription at Class I Cyclic AMP Receptor Protein-Dependent Promoters

  2002cited by this paper
• Structural basis of transcription activation: the CAP-alpha CTD-DNA complex.

  2002cited by this paper
• Kinetic Studies and Structural Models of the Association of E. coli σ70 RNA Polymerase with the λPR Promoter: Large Scale Conformational Changes in Forming the Kinetically Significant Intermediates

  2002cited by this paper
• Structure‐based analysis of RNA polymerase function: the largest subunit's rudder contributes critically to elongation complex stability and is not involved in the maintenance of RNA–DNA hybrid length

  2002cited by this paper
• Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution

  2002influential reference
• Structure of the Bacterial RNA Polymerase Promoter Specificity σ Subunit

  2002cited by this paper
• The sigma(70) subunit of RNA polymerase is contacted by the (lambda)Q antiterminator during early elongation.

  2002cited by this paper
• Autoregulation of a bacterial σ factor explored by using segmental isotopic labeling and NMR

  2002cited by this paper
• Swing-gate model of nucleotide entry into the RNA polymerase active center.

  2002cited by this paper
• Autoregulation of a bacterial sigma factor explored by using segmental isotopic labeling and NMR.

  2002cited by this paper
• Structural organization of bacterial RNA polymerase holoenzyme and the RNA polymerase-promoter open complex.

  2002cited by this paper
• A Role for Interaction of the RNA Polymerase Flap Domain with the σ Subunit in Promoter Recognition

  2002cited by this paper
• Views of transcription initiation.

  2002cited by this paper
• The σ70 Subunit of RNA Polymerase Is Contacted by the λQ Antiterminator during Early Elongation

  2002cited by this paper
• Conformational flexibility of bacterial RNA polymerase

  2002influential reference
• Open season on RNA polymerase

  2002cited by this paper
• Structure of the bacterial RNA polymerase promoter specificity sigma subunit.

  2002influential reference
• Binding of the initiation factor sigma(70) to core RNA polymerase is a multistep process.

  2001cited by this paper
• Structural Basis of Transcription: RNA Polymerase II at 2.8 Ångstrom Resolution

  2001cited by this paper
• Structural mechanism for rifampicin inhibition of bacterial rna polymerase.

  2001cited by this paper
• Translocation of sigma(70) with RNA polymerase during transcription: fluorescence resonance energy transfer assay for movement relative to DNA.

  2001cited by this paper
• Structural Basis of Transcription: An RNA Polymerase II Elongation Complex at 3.3 Å Resolution

  2001influential reference
• Binding of the Initiation Factor σ70 to Core RNA Polymerase Is a Multistep Process

  2001cited by this paper
• Bacterial RNA polymerase subunit omega and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly.

  2001cited by this paper
• Domain 1.1 of the sigma(70) subunit of Escherichia coli RNA polymerase modulates the formation of stable polymerase/promoter complexes.

  2001cited by this paper
• A “master” in base unpairing during isomerization of a promoter upon RNA polymerase binding

  2001cited by this paper
• Allosteric Control of RNA Polymerase by a Site That Contacts Nascent RNA Hairpins

  2001cited by this paper
• Different Roles for Basic and Aromatic Amino Acids in Conserved Region 2 of Escherichia coli ς70 in the Nucleation and Maintenance of the Single-stranded DNA Bubble in Open RNA Polymerase-Promoter Complexes*

  2001cited by this paper
• A coiled-coil from the RNA polymerase beta' subunit allosterically induces selective nontemplate strand binding by sigma(70).

  2001cited by this paper
• Inaugural Article: Restructuring of an RNA polymerase holoenzyme elongation complex by lambdoid phage Q proteins

  2001cited by this paper
• Fine structure of E. coli RNA polymerase-promoter interactions: alpha subunit binding to the UP element minor groove.

  2001cited by this paper
• Structural organization of the RNA polymerase-promoter open complex.

  2000cited by this paper
• Aromatic amino acids in region 2.3 of Escherichia coli sigma 70 participate collectively in the formation of an RNA polymerase-promoter open complex.

  2000cited by this paper
• Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70.

  2000cited by this paper
• Control of elongation by RNA polymerase II.

  2000cited by this paper
• RNA polymerase structure-function: insights into points of transcriptional regulation.

  2000cited by this paper
• The Bacterial Enhancer-Dependent ς54(ςN) Transcription Factor

  2000cited by this paper
• A Structural Model of Transcription Elongation

  2000influential reference
• The 8-Nucleotide-long RNA:DNA Hybrid Is a Primary Stability Determinant of the RNA Polymerase II Elongation Complex*

  2000cited by this paper
• Escherichia coli promoter opening and −10 recognition: mutational analysis of σ70

  2000cited by this paper
• RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II.

  2000cited by this paper
• Fused and Overlapping rpoB andrpoC Genes in Helicobacters, Campylobacters, and Related Bacteria

  1999cited by this paper
• A zinc-binding site in the largest subunit of DNA-dependent RNA polymerase is involved in enzyme assembly.

  1999cited by this paper
• Core RNA polymerase from E. coli induces a major change in the domain arrangement of the sigma 70 subunit.

  1999cited by this paper
• Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

  1999influential reference
• Determinants of the stability of transcription elongation complexes: interactions of the nascent RNA with the DNA template and the RNA polymerase.

  1999cited by this paper
• Interactions of Escherichia coli sigma(70) within the transcription elongation complex.

  1999cited by this paper
• A mutation in region 1.1 of σ70 affects promoter DNA binding by Escherichia coli RNA polymerase holoenzyme

  1999cited by this paper
• The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized.

  1999cited by this paper
• Mechanistic model of the elongation complex of Escherichia coli RNA polymerase.

  1998cited by this paper
• Conformational Changes of Escherichia coli RNA Polymerase ς70 Factor Induced by Binding to the Core Enzyme*

  1998cited by this paper
• Localization of a sigma70 binding site on the N terminus of the Escherichia coli RNA polymerase beta' subunit.

  1998cited by this paper
• The mechanism of action of T7 DNA polymerase.

  1998cited by this paper
• Visualization of the binding site for the transcript cleavage factor GreB on Escherichia coli RNA polymerase.

  1998cited by this paper
• Rpb3, Stoichiometry and Sequence Determinants of the Assembly into Yeast RNA Polymerase II in Vivo *

  1998cited by this paper
• Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution

  1998cited by this paper
• Crucial role of the RNA:DNA hybrid in the processivity of transcription.

  1998cited by this paper
• Functional topography of nascent RNA in elongation intermediates of RNA polymerase.

  1998cited by this paper
• Localization of a ς70 Binding Site on the N Terminus of the Escherichia coli RNA Polymerase β′ Subunit*

  1998cited by this paper
• Promoter opening via a DNA fork junction binding activity.

  1998cited by this paper
• Region 1 of sigma70 is required for efficient isomerization and initiation of transcription by Escherichia coli RNA polymerase.

  1997cited by this paper
• Nuclease Cleavage of the Upstream Half of the Nontemplate Strand DNA in an Escherichia coli Transcription Elongation Complex Causes Upstream Translocation and Transcriptional Arrest*

  1997cited by this paper
• Flexible linker in the RNA polymerase alpha subunit facilitates the independent motion of the C-terminal activator contact domain.

  1997cited by this paper
• Influence of Mg2+ and Temperature on Formation of the Transcription Bubble*

  1997cited by this paper
• A mutant RNA polymerase that forms unusual open promoter complexes.

  1997cited by this paper
• Region 2.5 of the Escherichia coli RNA polymerase σ70 subunit is responsible for the recognition of the ‘extended −10’ motif at promoters

  1997cited by this paper
• Extended —10 Promoters

  1997cited by this paper
• Transcription Processivity: Protein-DNA Interactions Holding Together the Elongation Complex

  1996cited by this paper
• Domain Organization of theEscherichia coliRNA Polymerase σ70Subunit

  1996cited by this paper
• Domain organization of the Escherichia coli RNA polymerase sigma 70 subunit.

  1996cited by this paper
• Structural Modules of the Large Subunits of RNA Polymerase

  1996cited by this paper
• Translocation of the Escherichia coli transcription complex observed in the registers 11 to 20: "jumping" of RNA polymerase and asymmetric expansion and contraction of the "transcription bubble".

  1995cited by this paper
• Solution Structure of the Activator Contact Domain of the RNA Polymerase α Subunit

  1995cited by this paper
• Solution structure of the activator contact domain of the RNA polymerase alpha subunit.

  1995cited by this paper
• The RNA chain elongation rate in Escherichia coli depends on the growth rate

  1994cited by this paper
• The sigma subunit conserved region 3 is part of "5'-face" of active center of Escherichia coli RNA polymerase.

  1994cited by this paper
• Domain organization of RNA polymerase α subunit: C-terminal 85 amino acids constitute a domain capable of dimerization and DNA binding

  1994cited by this paper
• Human RNA polymerase II subunit hRPB14 is homologous to yeast RNA polymerase I, II, and III subunits (AC19 and RPB11) and is similar to a portion of the bacterial RNA polymerase alpha subunit.

  1994cited by this paper
• A unified polymerase mechanism for nonhomologous DNA and RNA polymerases.

  1994cited by this paper
• Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription.

  1993cited by this paper
• Amino-terminal amino acids modulate sigma-factor DNA-binding activity.

  1993cited by this paper
• Transcript cleavage factors from E. coli.

  1993cited by this paper

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  2019cites this paper
• Stationary RNA polymerase fluctuations during transcription elongation.

  2019cites this paper
• RNA Polymerase interactions and elongation rate.

  2018cites this paper
• Fidaxomicin jams Mycobacterium tuberculosis RNA polymerase motions needed for initiation via RbpA contacts

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  2017cites this paper
• Features of genomic organization in a nucleotide-resolution molecular model of the Escherichia coli chromosome

  2017cites this paper
• Mechanistic Principles Behind Molecular Mechanism of Rifampicin Resistance in Mutant RNA Polymerase Beta Subunit of Mycobacterium tuberculosis

  2017cites this paper
• Studies on transcription in Escherichia coli

  2017cites this paper
• NusG inhibits RNA polymerase backtracking by stabilizing the minimal transcription bubble

  2016cites this paper
• Mathematical modeling for transcription of DNA with pausing : stochastic model with torque, and diffusive transport model

  2016cites this paper
• A Mechanistic Model for Cooperative Behavior of Co-transcribing RNA Polymerases

  2016cites this paper
• Artificial systems for in vitro gene expression

  2015cites this paper
• Plastid gene transcription: promoters and RNA polymerases.

  2014cites this paper
• Their causes and consequences

  2013cites this paper
• R-loops in bacterial transcription

  2013cites this paper
• Interdomain repression in the enhancer binding protein NorR

  2011cites this paper
• Plant sigma factors come of age: flexible transcription factor network for regulated plastid gene expression

  2010cites this paper
• Molecular Structure and Dynamics of Bacterial Nucleoids

  2010cites this paper
• Clostridium difficile toxin synthesis is negatively regulated by TcdC.

  2008cites this paper
• Clostridium difficile toxin synthesis is negatively regulated by

  2008cites this paper
• The UP Element Is Necessary but Not Sufficient for Growth Rate-Dependent Control of the Escherichia coli guaB Promoter

  2008cites this paper
• Advances in bacterial promoter recognition and its control by factors that do not bind DNA

  2008cites this paper
• rRNA promoter regulation by nonoptimal binding of sigma region 1.2: an additional recognition element for RNA polymerase.

  2006cites this paper
• Organization of supercoil domains and their reorganization by transcription

  2005cites this paper
• Response of RNA polymerase to ppGpp: requirement for the omega subunit and relief of this requirement by DksA.

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