Deep interactome profiling of membrane proteins by co-interacting protein identification technology

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Nature Protocols

• Publication date

  2016-11-17

• Fields of study

  Biology, Medicine, Chemistry, Computer Science

• Identifiers
  DOI 10.1038/nprot.2016.140PMID 27854364PMCID PMC5444904
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  1992influential reference
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  1991cited by this paper
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