Specific but interdependent functions for Arabidopsis AGO4 and AGO6 in RNA‐directed DNA methylation

No abstract is available for this paper.

• Publication year

  2014

• Venue

  EMBO Journal

• Publication date

  2014-12-20

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.15252/embj.201489453PMID 25527293PMCID PMC4365029
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

  2014cited by this paper
• Mutations on the DNA Binding Surface of TBP Discriminate between Yeast TATA and TATA-Less Gene Transcription

  2014cited by this paper
• RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

  2014cited by this paper
• An Rrp6-like protein positively regulates noncoding RNA levels and DNA methylation in Arabidopsis.

  2014influential reference
• Molecular mechanism of action of plant DRM de novo DNA methyltransferases.

  2014cited by this paper
• DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV

  2013cited by this paper
• RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

  2013cited by this paper
• Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.

  2013cited by this paper
• Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis

  2012cited by this paper
• A transcription fork model for Pol IV and Pol V-dependent RNA-directed DNA methylation.

  2012cited by this paper
• NERD, a plant-specific GW protein, defines an additional RNAi-dependent chromatin-based pathway in Arabidopsis.

  2012cited by this paper
• A DNA 3' phosphatase functions in active DNA demethylation in Arabidopsis.

  2012cited by this paper
• Conservation between the RNA polymerase I, II, and III transcription initiation machineries.

  2012cited by this paper
• A role for small RNAs in DNA double-strand break repair.

  2012cited by this paper
• INAUGURAL ARTICLE by a Recently Elected Academy Member:INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis

  2012cited by this paper
• BRAT-BW: efficient and accurate mapping of bisulfite-treated reads

  2012cited by this paper
• Roles of DICER-LIKE and ARGONAUTE Proteins in TAS-Derived Small Interfering RNA-Triggered DNA Methylation1[W]

  2012cited by this paper
• ARGONAUTE2 Mediates RNA-Silencing Antiviral Defenses against Potato virus X in Arabidopsis1[W][OA]

  2011cited by this paper
• Two Distinct Roles of ARABIDOPSIS HOMOLOG OF TRITHORAX1 (ATX1) at Promoters and within Transcribed Regions of ATX1-Regulated Genes[C][W]

  2011cited by this paper
• RNA-directed DNA methylation.

  2011cited by this paper
• Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development.

  2011cited by this paper
• An Antiviral Defense Role of AGO2 in Plants

  2011cited by this paper
• AGO6 Functions in RNA-Mediated Transcriptional Gene Silencing in Shoot and Root Meristems in Arabidopsis thaliana

  2011cited by this paper
• Establishing, maintaining and modifying DNA methylation patterns in plants and animals

  2010cited by this paper
• THE CRYSTAL STRUCTURE

  2010cited by this paper
• Structural basis for 5′-nucleotide base-specific recognition of guide RNA by human AGO2

  2010cited by this paper
• Control of female gamete formation by a small RNA pathway in Arabidopsis

  2010cited by this paper
• An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation

  2010cited by this paper
• The Arabidopsis RNA-Directed DNA Methylation Argonautes Functionally Diverge Based on Their Expression and Interaction with Target Loci[W][OA]

  2010influential reference
• Small RNA Duplexes Function as Mobile Silencing Signals Between Plant Cells

  2010cited by this paper
• Form, Function, and Regulation of ARGONAUTE Proteins

  2010cited by this paper
• An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein.

  2009cited by this paper
• RNA-mediated chromatin-based silencing in plants.

  2009influential reference
• Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis.

  2009cited by this paper
• RNA Polymerase V transcription guides ARGONAUTE4 to chromatin

  2009cited by this paper
• Small silencing RNAs: an expanding universe

  2009cited by this paper
• Roles of RNA polymerase IV in gene silencing.

  2008cited by this paper
• Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide.

  2008cited by this paper
• The growing catalog of small RNAs and their association with distinct Argonaute/Piwi family members

  2008cited by this paper
• Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation.

  2008cited by this paper
• Dynamic Regulation of ARGONAUTE4 within Multiple Nuclear Bodies in Arabidopsis thaliana

  2008cited by this paper
• PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis

  2008cited by this paper
• An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in Arabidopsis plants

  2008cited by this paper
• Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex

  2008cited by this paper
• Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes.

  2008cited by this paper
• Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing

  2007influential reference
• Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components.

  2007cited by this paper
• Role of RNA polymerase IV in plant small RNA metabolism

  2007cited by this paper
• Slicer and the argonautes.

  2007cited by this paper
• An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana.

  2006influential reference
• The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center.

  2006influential reference
• Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation

  2006cited by this paper
• Endogenous targets of RNA‐directed DNA methylation and Pol IV in Arabidopsis

  2006cited by this paper
• Purified Argonaute2 and an siRNA form recombinant human RISC

  2005cited by this paper
• Structural basis for 5′-end-specific recognition of guide RNA by the A. fulgidus Piwi protein

  2005cited by this paper
• Crystal Structure of Argonaute and Its Implications for RISC Slicer Activity

  2004cited by this paper
• Nucleic acid 3′-end recognition by the Argonaute2 PAZ domain

  2004cited by this paper
• Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain

  2004cited by this paper
• RNA-directed DNA methylation

  2004cited by this paper
• Mapping the location of TFIIB within the RNA polymerase II transcription preinitiation complex: a model for the structure of the PIC.

  2004cited by this paper
• Structure and conserved RNA binding of the PAZ domain

  2003cited by this paper
• ARGONAUTE4 Control of Locus-Specific siRNA Accumulation and DNA and Histone Methylation

  2003cited by this paper
• Fertile Hypomorphic ARGONAUTE (ago1) Mutants Impaired in Post-Transcriptional Gene Silencing and Virus Resistance

  2002cited by this paper
• AGO1, QDE-2, and RDE-1 are related proteins required for post-transcriptional gene silencing in plants, quelling in fungi, and RNA interference in animals.

  2000cited by this paper
• AGO1 defines a novel locus of Arabidopsis controlling leaf development

  1998cited by this paper

• Advances in Plant Antiviral RNAi: From Host DCLs/RDRs to Diversified Viral Counteracting Strategies.

  2026cites this paper
• A multi-omics dissection of the molecular mechanisms underlying water soaking in fresh-cut watermelon

  2026cites this paper
• DNA methylation in plant heterosis: mechanisms and prospects

  2025cites this paper
• Epigenetic control of seed development and dormancy in cereals

  2025cites this paper
• Epigenetic Regulation of Glucosinolate Biosynthesis: Mechanistic Insights and Breeding Prospects in Brassicaceae

  2025influential citation
• The generation of novel epialleles in plants: the prospective behind re-shaping the epigenome

  2025cites this paper
• Modifiers of genetic dominance at the Arabidopsis self-incompatibility locus retain proto-miRNA features and act through non-canonical gene silencing pathways

  2025cites this paper
• Impact of water stress to plant epigenetic mechanisms in stress and adaptation

  2025cites this paper
• Atypical epigenetic and small RNA control of degenerated transposons and their fragments in clonally reproducing Spirodela polyrhiza

  2025cites this paper
• Barley AGO4 proteins show overlapping functionality with distinct small RNA-binding properties in heterologous complementation

  2024influential citation
• The origin, evolution, and functional divergence of the Dicer-like (DCL) and Argonaute (AGO) gene families in plants

  2024cites this paper
• Enjoy the silence: Canonical and non-canonical RNA silencing activity during plant sexual reproduction.

  2024cites this paper
• The Biosynthesis Process of Small RNA and Its Pivotal Roles in Plant Development

  2024cites this paper
• Phyllostachys edulis Argonaute genes function in the shoot architecture.

  2024cites this paper
• Function and regulation of plant ARGONAUTE proteins in response to environmental challenges: a review

  2024cites this paper
• Genome-wide identification and in silico characterization of major RNAi gene families in date palm (Phoenix dactylifera)

  2024cites this paper
• Comparative transcriptomics of seed nourishing tissues: uncovering conserved and divergent pathways in seed plants

  2024cites this paper
• Domain organization, expression, subcellular localization, and biological roles of ARGONAUTE proteins in Arabidopsis thaliana.

  2023cites this paper
• Rice requires a chromatin remodeler for Polymerase IV-small interfering RNA production and genomic immunity.

  2023cites this paper
• Nitric oxide controls shoot meristem activity via regulation of DNA methylation

  2023cites this paper
• Genome-wide identification of DCL, AGO, and RDR gene families in wheat (Triticum aestivum L.) and their expression analysis in response to heat stress

  2023cites this paper
• Biogenesis, Mode of Action and the Interactions of Plant Non-Coding RNAs

  2023cites this paper
• Methylome response to proteasome inhibition by the Pseudomonas syringae virulence factor Syringolin A.

  2023influential citation
• A cryo-EM structure of KTF1-bound polymerase V transcription elongation complex

  2023cites this paper
• Genetic bases of resistance to the rice hoja blanca disease deciphered by a quantitative trait locus approach

  2023cites this paper
• Phylogenetic analyses of seven protein families refine the evolution of small RNA pathways in green plants.

  2023cites this paper
• JMJ28 guides sequence-specific targeting of ATX1/2-containing COMPASS-like complex in Arabidopsis.

  2023cites this paper
• Unravelling Differential DNA Methylation Patterns in Genotype Dependent Manner under Salinity Stress Response in Chickpea

  2023influential citation
• microRNAs and Their Roles in Plant Development

  2022cites this paper
• Rice anther tapetum; a vital reproductive cell layer for sporopollenin biosynthesis and pollen exine patterning.

  2022cites this paper
• Cotranscriptional RNA processing and modification in plants.

  2022cites this paper
• You shall not pass! A Chromatin barrier story in plants

  2022cites this paper
• The mechanisms of siRNA selection by plant Argonaute proteins triggering DNA methylation

  2022cites this paper
• Integrated Analyses of Transcriptome and Chlorophyll Fluorescence Characteristics Reveal the Mechanism Underlying Saline–Alkali Stress Tolerance in Kosteletzkya pentacarpos

  2022cites this paper
• ROS1-mediated decrease in DNA methylation and increase in expression of defense genes and stress response genes in Arabidopsis thaliana due to abiotic stresses

  2022cites this paper
• RNAi-Based Antiviral Innate Immunity in Plants

  2022cites this paper
• A More Complete Story of the Genetic Bases of Resistance to the Rice Hoja Blanca Virus

  2022cites this paper
• ARGONAUTE 2 increases rice susceptibility to rice black‐streaked dwarf virus infection by epigenetically regulating HEXOKINASE 1 expression

  2021cites this paper
• Origin, evolution and diversification of plant ARGONAUTE proteins.

  2021cites this paper
• The small RNA-mediated gene silencing machinery is required in Arabidopsis for stimulation of growth, systemic disease resistance, and the suppression of nitrile-specifier, NSP4 gene by Trichoderma atroviride.

  2021cites this paper
• Reinforcement of CHH methylation through RNA-directed DNA methylation ensures sexual reproduction in rice.

  2021cites this paper
• Small RNA Profiling of Susceptible and Resistant Ty-1 Encoding Tomato Plants Upon Tomato Yellow Leaf Curl Virus Infection

  2021cites this paper
• Genome-wide identification and expression analysis of Argonaute gene family from longan embryogenic callus

  2021cites this paper
• Beyond identity: Understanding the contribution of the 5’ nucleotide of the antisense strand to RNAi activity

  2021cites this paper
• Atypical DNA methylation, sRNA-size distribution, and female gametogenesis in Utricularia gibba

  2021cites this paper
• In Response to Abiotic Stress, DNA Methylation Confers EpiGenetic Changes in Plants

  2021cites this paper
• Maize Decrease in DNA methylation 1 targets RNA-directed DNA methylation on active chromatin.

  2021cites this paper
• METHYLOME DYNAMICS UPON PROTEASOME INHIBITION BY THE PSEUDOMONAS VIRULENCE FACTOR SYRINGOLIN A

  2021cites this paper
• MSI4/FVE is required for accumulation of 24‐nt siRNAs and DNA methylation at a subset of target regions of RNA‐directed DNA methylation

  2021cites this paper
• TOP1α, UPF1, and TTG2 regulate seed size in a parental dosage–dependent manner

  2020cites this paper
• Small RNA and DNA methylation in plants

  2020cites this paper
• siRNA-mediated de novo silencing of Ac/Ds transposons is initiated by alternative transposition in maize

  2020cites this paper
• Aphid feeding induces the relaxation of epigenetic control and the associated regulation of the defense response in Arabidopsis

  2020cites this paper
• Small RNA-Mediated De Novo Silencing of Ac/Ds Transposons Is Initiated by Alternative Transposition in Maize

  2020cites this paper
• Genome-Wide Identification of RNA Silencing-Related Genes and Their Expressional Analysis in Response to Heat Stress in Barley (Hordeum vulgare L.)

  2020cites this paper
• Global reinforcement of DNA methylation through enhancement of RNA-directed DNA methylation ensures sexual reproduction in rice

  2020cites this paper
• Genome-wide identification and characterization of DCL, AGO and RDR gene families in Saccharum spontaneum

  2020cites this paper
• Chloroplast development and genomes uncoupled signaling are independent of the RNA-directed DNA methylation pathway

  2020cites this paper
• The canonical RdDM pathway mediates the control of seed germination timing under salinity.

  2020cites this paper
• Non-coding RNA polymerases that silence transposable elements and reprogram gene expression in plants

  2020cites this paper
• RNAi Mediated Hypoxia Stress Tolerance in Plants

  2020cites this paper
• Non-coding RNA polymerases that silence transposable elements and reprogram gene expression in plant

  2020cites this paper
• Mediation of The Salicylic Acid Pathway by ROS1 in Response to Abiotic Stresses

  2020cites this paper
• Characterization and fine mapping of Arabidopsis RLL3, a locus required for DNA demethylation pathway

  2019cites this paper
• Dark-Induced Senescence Causes Localized Changes in DNA Methylation1

  2019cites this paper
• Crosstalk between epigenetic silencing and infection by tobacco rattle virus in Arabidopsis

  2019cites this paper
• Argonaute Proteins: Why Are They So Important for the Legume–Rhizobia Symbiosis?

  2019cites this paper
• OsAGO2 controls ROS production and the initiation of tapetal PCD by epigenetically regulating OsHXK1 expression in rice anthers

  2019cites this paper
• Novel Nuclear Functions of Arabidopsis ARGONAUTE1: Beyond RNA Interference1[OPEN]

  2019cites this paper
• Epigenetic Regulation of Plant Gametophyte Development

  2019cites this paper
• Expression analysis of Argonaute genes in maize (Zea mays L.) in response to abiotic stress

  2019cites this paper
• Dynamics and function of DNA methylation in plants

  2018cites this paper
• Retrospective and perspective of plant epigenetics in China.

  2018cites this paper
• Evolution and Diversification of Small RNA Pathways in Flowering Plants.

  2018cites this paper
• Manipulating plant RNA-silencing pathways to improve the gene editing efficiency of CRISPR/Cas9 systems

  2018cites this paper
• RNA polymerases IV and V influence the 3′ boundaries of Polymerase II transcription units in Arabidopsis

  2018cites this paper
• Actions of plant Argonautes: predictable or unpredictable?

  2018cites this paper
• The developmental dynamics of the Populus stem transcriptome

  2018cites this paper
• Small RNA pathways responsible for non-cell-autonomous regulation of plant reproduction

  2018cites this paper
• Analysis of the DNA methylation patterns and transcriptional regulation of the NB-LRR-encoding gene family in Arabidopsis thaliana

  2018cites this paper
• Gene editing of rice miRNA and argonaute genes

  2018influential citation
• Salicylic acid collaborates with gene silencing to tomato defense against tomato yellow leaf curl virus (TYLCV)

  2018cites this paper
• The RNAs of RNA-directed DNA methylation.

  2017cites this paper
• Small-interfering RNA-mediated epigenetics and gene regulation in the nucleus

  2017cites this paper
• Gametogenesis-related small RNAs and Argonaute Proteins in Arabidopsis thaliana

  2017cites this paper
• RNA polymerases IV and V influence the 3’ boundaries of Polymerase II transcription units in Arabidopsis

  2017cites this paper
• New discoveries generate new questions about RNA-directed DNA methylation in Arabidopsis.

  2017cites this paper
• AGO4 is specifically required for heterochromatic siRNA accumulation at Pol V‐dependent loci in Arabidopsis thaliana

  2017cites this paper
• Plant ARGONAUTEs: Features, Functions, and Unknowns.

  2017cites this paper
• Computational Analysis of Genome-Wide ARGONAUTE-Dependent DNA Methylation in Plants.

  2017cites this paper
• RNAi in Plants: An Argonaute-Centered View

  2016cites this paper
• Cytorhabdovirus P protein suppresses RISC-mediated cleavage and RNA silencing amplification in planta.

  2016cites this paper
• Accurate Chromosome Segregation at First Meiotic Division Requires AGO4, a Protein Involved in RNA-Dependent DNA Methylation in Arabidopsis thaliana

  2016cites this paper
• DNA Methylation and Demethylation in Plant Immunity.

  2016cites this paper
• DNA Damage-Induced Transcription of Transposable Elements and Long Non-coding RNAs in Arabidopsis Is Rare and ATM-Dependent.

  2016cites this paper
• SAC3B, a central component of the mRNA export complex TREX-2, is required for prevention of epigenetic gene silencing in Arabidopsis

  2016cites this paper
• AGO4 is specifically required for heterochromatic siRNA accumulation at Pol V-dependent loci in Arabidopsis thaliana

  2016cites this paper
• Maintenance and Inheritance of DNA Methylation in Arabidopsis

  2016cites this paper
• Alteraciones de la cromatina de Arabidopsis inducidas por infecciones bacterianas y sus efectos en la activación de las defensas

  2016cites this paper
• Dynamic regulation of DNA demethylation and RNA-directed DNA methylation in Arabidopsis

  2016cites this paper