The plate debate: cultivable communities have no utility in contemporary environmental microbial ecology.

No abstract is available for this paper.

• Publication year

  2007

• Venue

  FEMS Microbiology Ecology

• Publication date

  2007-06-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/J.1574-6941.2007.00331.XPMID 17524120
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The Micro-Organisms of the Soil

  2009cited by this paper
• Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology.

  2004cited by this paper
• Analysis of microbial community functional diversity using sole-carbon-source utilisation profiles - a critique.

  2002cited by this paper
• Phylogenetic Analysis of Microbial Diversity in the Rhizoplane of Oilseed Rape (Brassica napus cv. Westar) Employing Cultivation-Dependent and Cultivation-Independent Approaches

  2001cited by this paper
• The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.

  2001cited by this paper
• Species Diversity of Uncultured and Cultured Populations of Soil and Marine Ammonia Oxidizing Bacteria

  2001cited by this paper
• Molecular Analysis of Bacterial Community Structure and Diversity in Unimproved and Improved Upland Grass Pastures

  1999cited by this paper
• Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation

  1997cited by this paper
• Analysis and interpretation of community-level physiological profiles in microbial ecology

  1997cited by this paper
• Analysis of soil and bacterioplankton community DNA by melting profiles and reassociation kinetics

  1997cited by this paper
• Molecular microbial diversity of an agricultural soil in Wisconsin

  1996cited by this paper
• Total bacterial diversity in soil and sediment communities—A review

  1996cited by this paper
• Detection of viable, but non‐culturable Pseudomonas fluorescens DF57 in soil using a microcolony epifluorescence technique

  1993cited by this paper
• Classification and Characterization of Heterotrophic Microbial Communities on the Basis of Patterns of Community-Level Sole-Carbon-Source Utilization

  1991cited by this paper
• High diversity in DNA of soil bacteria

  1990cited by this paper
• 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community

  1990cited by this paper
• Sleuthing out bacterial identities

  1989cited by this paper

• Metagenomic Exploration Uncovers Several Novel ‘Candidatus’ Species Involved in Acetate Metabolism in High‐Ammonia Thermophilic Biogas Processes

  2025cites this paper
• Impact of fecal microbiota transplantation in dogs

  2025cites this paper
• Isolation, identification and community study of root fungal isolates from disturbed and undisturbed arctic and alpine tundra habitats in Northern Quebec, Canada.

  2025cites this paper
• Tracing the evolutionary pathway: on the origin of mitochondria and eukaryogenesis

  2025cites this paper
• Metabolic Segregation and Functional Gene Clusters in Anaerobic Digestion Consortia.

  2025cites this paper
• Diagnostic Toolbox for Plastisphere Studies: A Review

  2024cites this paper
• Thermodynamic constraints on the window of opportunity for direct interspecies electron transfer (DIET)

  2024cites this paper
• Does Faeces Excreted by Moxidectin-Treated Sheep Impact Coprophagous Insects and the Activity of Soil Microbiota in Subtropical Pastures?

  2024cites this paper
• Controls and significance of priming effects in lake sediments

  2023cites this paper
• Cultivating the unseen: Lessons from James Tiedje

  2023cites this paper
• Microbiological hydrogen (H2) thresholds in anaerobic continuous‐flow systems: Effects of system characteristics

  2023cites this paper
• Transport-limited reactions in microbial systems.

  2022cites this paper
• The impact of protozoa addition on the survivability of Bacillus inoculants and soil microbiome dynamics

  2022cites this paper
• Coupling of metataxonomics and culturing improves bacterial diversity characterization and identifies a novel Rhizorhapis sp. with metal resistance potential in a multi-contaminated waste sediment

  2022cites this paper
• Effect of magnetite addition on transcriptional profiles of syntrophic Bacteria and Archaea during anaerobic digestion of propionate in wastewater sludge.

  2022cites this paper
• Coupling of metataxonomics and culturing improves description of bacterial 1 communities from a multi-contaminated waste sediment and identifies a novel 2 Rhizorhapis sp . with metal resistance potential 3 4

  2022cites this paper
• Synergy of culture-dependent molecular identification and whole-community metabarcode sequencing for characterizing the microbiota of arable crop residues

  2021cites this paper
• Evaluation of the Respiratory Microbiome and the Use of Tracheal Lavage as a Diagnostic Tool in Kemp’s Ridley Sea Turtles (Lepidochelys kempii)

  2021cites this paper
• Assessing the Cultivability of Bacteria and Fungi from Arable Crop Residues Using Metabarcoding Data as a Reference

  2021cites this paper
• Thermodynamics shapes the biogeography of propionate-oxidizing syntrophs in paddy field soils.

  2021cites this paper
• Composition and Potential Function of Fecal Bacterial Microbiota from Six Bird Species

  2021cites this paper
• Changes in heterotrophic microbial communities induced by biocidal treatments in the Monastery of San Martiño Pinario (Santiago de Compostela, NW Spain)

  2021cites this paper
• Eutrophication as a driver of microbial community structure in lake sediments.

  2020cites this paper
• Linkage Between Dissolved Organic Matter Transformation, Bacterial Carbon Production, and Diversity in a Shallow Oligotrophic Aquifer: Results From Flow-Through Sediment Microcosm Experiments

  2020cites this paper
• Ericoid mycorrhizal symbiosis: theoretical background and methods for its comprehensive investigation

  2020cites this paper
• Multiple and flexible roles of facultative anaerobic bacteria in microaerophilic oleate degradation.

  2020cites this paper
• A dynamic microbial sulfur cycle in a serpentinizing continental ophiolite.

  2020cites this paper
• Different response of bacteria, archaea and fungi to process parameters in nine full‐scale anaerobic digesters

  2019cites this paper
• A microfluidic platform for the simultaneous quantification of methanogen populations in anaerobic digestion processes

  2019cites this paper
• Syntrophus aciditrophicus uses the same enzymes in a reversible manner to degrade and synthesize aromatic and alicyclic acids

  2019cites this paper
• Microbial population dynamics in temperature‐phased anaerobic digestion of municipal wastewater sludge

  2019cites this paper
• Rethinking soil water repellency and its management

  2019cites this paper
• The fitness of chemotrophs increases when their catabolic by‐products are consumed by other species

  2019cites this paper
• Two-step genomic sequence comparison strategy to design Trichoderma strain-specific primers for quantitative PCR

  2019cites this paper
• Microbial Diversity: Genetic Diversity Vs Functional Diversity

  2018cites this paper
• Microbial Diversity: Genetic Diversity Vs Functional Diversity

  2018cites this paper
• Microbial rRNA gene expression and co‐occurrence profiles associate with biokinetics and elemental composition in full‐scale anaerobic digesters

  2018cites this paper
• Seawater recirculation through subducting sediments sustains a deeply buried population of sulfate‐reducing bacteria

  2018cites this paper
• Application of Bacillus velezensis NJAU-Z9 Enhanced Plant Growth Associated with Efficient Rhizospheric Colonization Monitored by qPCR with Primers Designed from the Whole Genome Sequence

  2018cites this paper
• Glycine betaine metabolism in the acetogenic bacterium Acetobacterium woodii

  2018cites this paper
• Gene expression and ultrastructure of meso‐ and thermophilic methanotrophic consortia

  2018cites this paper
• Enhancement of methanogenesis by electric syntrophy with biogenic iron‐sulfide minerals

  2018cites this paper
• Microbial Diversity: Genetic Diversity Vs Functional Diversity

  2018cites this paper
• Comparative proteome analysis of propionate degradation by Syntrophobacter fumaroxidans in pure culture and in coculture with methanogens

  2018cites this paper
• Soil Microbiome for Enhanced Crop Productivity

  2017cites this paper
• Hydrogen or formate: Alternative key players in methanogenic degradation

  2017cites this paper
• Culture and long‐term storage of microorganisms for forensic science

  2017cites this paper
• Robustness of a model microbial community emerges from population structure among single cells of a clonal population

  2017cites this paper
• Effects of mild water restriction on digestion and nitrogen metabolism in a desert adapted goat breed

  2017cites this paper
• Thermodynamically diverse syntrophic aromatic compound catabolism

  2017cites this paper
• The metabolic footprint of the airway bacterial community in cystic fibrosis

  2017cites this paper
• Is the methanogenic community reflecting the methane emissions of river sediments?—comparison of two study sites

  2017cites this paper
• Effects of strategic tillage and plant hormone treatments on wheat-associated microbial communities

  2017cites this paper
• Molecular assessment of the fecal microbiota in healthy cats and dogs before and during supplementation with fructo-oligosaccharides (FOS) and inulin using high-throughput 454-pyrosequencing

  2017cites this paper
• Cooperation in microbial communities and their biotechnological applications

  2017cites this paper
• Microbial community dynamics during the early stages of plant polymer breakdown in paddy soil.

  2016cites this paper
• Anaerobic microbial Fe(II) oxidation and Fe(III) reduction in coastal marine sediments controlled by organic carbon content.

  2016cites this paper
• High-Level Culturability of Epiphytic Bacteria and Frequency of Biosurfactant Producers on Leaves

  2016cites this paper
• High culturability of epiphytic bacteria and frequency of biosurfactant 1 producers on leaves 2

  2016cites this paper
• Interaction of some fungal entomopathogens of rice pests with phyllophytic microorganisms of four rice genotypes cultivated in coastal Odisha, India

  2016cites this paper
• A novel route for ethanol oxidation in the acetogenic bacterium Acetobacterium woodii: the acetaldehyde/ethanol dehydrogenase pathway.

  2016cites this paper
• The structure of phyllospheric microbial communities and their role in phytoremediation of air pollution

  2016influential citation
• An adhesin from hydrogen-utilizing rumen methanogen Methanobrevibacter ruminantium M1 binds a broad range of hydrogen-producing microorganisms.

  2016cites this paper
• Fermentation of glycerol by Anaerobium acetethylicum and its potential use in biofuel production

  2016cites this paper
• Temperature impacts differentially on the methanogenic food web of cellulose-supplemented peatland soil.

  2015cites this paper
• Physiology and Molecular Phylogeny of Bacteria Isolated from Alkaline Distillery Lime.

  2015cites this paper
• Hydrogen export from intertidal cyanobacterial mats: sources, fluxes and the influence of community composition.

  2015cites this paper
• The nexus of syntrophy-associated microbiota in anaerobic digestion revealed by long-term enrichment and community survey.

  2015cites this paper
• An initial investigation into the ecology of culturable aerobic postmortem bacteria.

  2015cites this paper
• Direct interspecies electron transfer accelerates syntrophic oxidation of butyrate in paddy soil enrichments.

  2015cites this paper
• Mesophilic versus thermophilic anaerobic digestion of cattle manure: methane productivity and microbial ecology

  2015cites this paper
• ASSESSING CHANGES IN SOIL MICROBIAL POPULATION WITH SOME SOIL PHYSICAL AND CHEMICAL PROPERTIES

  2015cites this paper
• Phenotyping Microarrays for the Characterization of Environmental Microorganisms

  2015cites this paper
• [Characterization, influence and manipulation of the gastrointestinal microbiota in health and disease].

  2015cites this paper
• Microbial Ecology—New Directions, New Importance

  2015cites this paper
• Characterization of wheat straw-degrading anaerobic alkali-tolerant mixed cultures from soda lake sediments by molecular and cultivation techniques

  2015cites this paper
• Ecological Media Reveal Community Structure Shifts in a Municipal Wastewater Treatment Train

  2015cites this paper
• Physiological and genetic basis for self-aggregation of a thermophilic hydrogenotrophic methanogen, Methanothermobacter strain CaT2.

  2014cites this paper
• Denitrification in Gram-positive bacteria, with focus on members of the Bacillaceae

  2014cites this paper
• The importance of hydrogen and formate transfer for syntrophic fatty, aromatic and alicyclic metabolism.

  2014cites this paper
• Long-term impact of farm management and crops on soil microorganisms assessed by combined DGGE and PLFA analyses

  2014cites this paper
• High spatial resolution of distribution and interconnections between Fe- and N-redox processes in profundal lake sediments.

  2014cites this paper
• Glutaryl‐coenzyme A dehydrogenase from Geobacter metallireducens – interaction with electron transferring flavoprotein and kinetic basis of unidirectional catalysis

  2014cites this paper
• Phylogeny, culturing, and metagenomics of the human gut microbiota.

  2014cites this paper
• Exploring the nature and diversity of microorganisms in healthcare and educational settings

  2014cites this paper
• Consumption of atmospheric hydrogen during the life cycle of soil-dwelling actinobacteria.

  2014cites this paper
• Bioenergetics of photoheterotrophic bacteria in the oceans.

  2013cites this paper
• Distribution of bacterial endophytes in peanut seeds obtained from axenic and control plant material under field conditions

  2013cites this paper
• Parvibacter caecicola gen. nov., sp. nov., a bacterium of the family Coriobacteriaceae isolated from the caecum of a mouse.

  2013cites this paper
• DNA extraction method selection for agricultural soil using TOPSIS multiple criteria decision-making model

  2013cites this paper
• Alkane-degrading bacteria at the soil-litter interface: comparing isolates with T-RFLP-based community profiles.

  2013cites this paper
• Gastrointestinal microorganisms in cats and dogs: a brief review Microorganismos gastrointestinales en gatos y perros: una revisión breve

  2013cites this paper
• Bacterial communities associated with roots of narrow-leafed lupin (Lupinus angustifolius L.)

  2013cites this paper
• Fungal communities associated with field grown oilseed rape (Brassica napus L.) – their possible role in early crop establishment

  2013cites this paper
• Gastrointestinal microorganisms in cats and dogs: a brief review

  2013cites this paper
• Exploiting New Systems-Based Strategies to Elucidate Plant–Bacterial Interactions in the Rhizosphere

  2013cites this paper
• The influence of free-living nematodes on nitrogen mineralisation in agricultural soil

  2013influential citation
• Progress in cultivation-independent phyllosphere microbiology

  2013influential citation
• Methodological aspects for the culture and quantification of heterotrophic sulfate-reducing bacteria

  2012cites this paper
• Methanogenesis facilitated by electric syntrophy via (semi)conductive iron-oxide minerals.

  2012cites this paper