We present Omni-ATAC, an improved ATAC-seq protocol for chromatin accessibility profiling that works across multiple applications with substantial improvement of signal-to-background ratio and information content. The Omni-ATAC protocol generates chromatin accessibility profiles from archival frozen tissue samples and 50-μm sections, revealing the activities of disease-associated DNA elements in distinct human brain structures. The Omni-ATAC protocol enables the interrogation of personal regulomes in tissue context and translational studies.
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
M. Corces,Alexandro E. Trevino,Emily G. Hamilton,Peyton Greenside,Nicholas A. Sinnott-Armstrong,Sam Vesuna,Ansuman T. Satpathy,Adam J. Rubin,K. Montine,Beijing Wu,Arwa S. Kathiria,S. Cho,Maxwell R Mumbach,Ava C. Carter,Maya M Kasowski,L. Orloff,Viviana I. Risca,Anshul B Kundaje,P. Khavari,T. Montine,W. Greenleaf,Howard Y. Chang
Published 2017 in Nature Methods
ABSTRACT
PUBLICATION RECORD
- Publication year
2017
- Venue
Nature Methods
- Publication date
2017-08-26
- Fields of study
Biology, Medicine, Computer Science
- Identifiers
- External record
- Source metadata
Semantic Scholar, PubMed
CITATION MAP
EXTRACTION MAP
CLAIMS
- No claims are published for this paper.
CONCEPTS
- No concepts are published for this paper.
REFERENCES
Showing 1-27 of 27 references · Page 1 of 1