3C technology: analyzing the spatial organization of genomic loci in vivo.

No abstract is available for this paper.

• Publication year

  2004

• Venue

  Methods in Enzymology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Materials Science

• Identifiers
  DOI 10.1016/S0076-6879(03)75030-7PMID 14870685
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Characterization of the human beta-globin downstream promoter region.

  2003cited by this paper
• Characterization of the human β-globin downstream promoter region

  2003cited by this paper
• Capturing Chromosome Conformation

  2002cited by this paper
• Long-range chromatin regulatory interactions in vivo

  2002cited by this paper
• Looping and interaction between hypersensitive sites in the active beta-globin locus.

  2002cited by this paper
• Making contacts on a nucleic acid polymer.

  2001cited by this paper
• Formaldehyde cross-linking for studying nucleosomal dynamics.

  1999cited by this paper
• Analysis of chromatin structure by in vivo formaldehyde cross-linking.

  1997cited by this paper
• Transcription complex stability and chromatin dynamics in vivo

  1995cited by this paper
• Formaldehyde-mediated DNA-protein crosslinking: a probe for in vivo chromatin structures.

  1985cited by this paper

• Multidimensional mapping of stimulation-responsive regulatory elements and candidate causal variants in T cell activation

  2026cites this paper
• CCAAT Promoter element regulates transgenerational expression of the MHC class I gene

  2024cites this paper
• ASCL1 promotes Scrt2 expression in the neural tube

  2024cites this paper
• Multi-feature clustering of CTCF binding creates robustness for loop extrusion blocking and Topologically Associating Domain boundaries

  2023cites this paper
• An autoimmune pleiotropic SNP modulates IRF5 alternative promoter usage through ZBTB3-mediated chromatin looping

  2023cites this paper
• Transgenerational Epigenetic Inheritance of MHC Class I Gene Expression is Regulated by the CCAAT Promoter Element

  2023cites this paper
• Landscape of enhancer disruption and functional screen in melanoma cells

  2023cites this paper
• In individuals with Williams syndrome, dysregulation of methylation in non-coding regions of neuronal and oligodendrocyte DNA is associated with pathology and cortical development

  2022cites this paper
• Embryonic heat conditioning in chicks induces transgenerational heat/immunological resilience via methylation on regulatory elements

  2022cites this paper
• Inferring Single-Cell 3D Chromosomal Structures Based on the Lennard-Jones Potential

  2021cites this paper
• Investigation of the Basic Steps in the Chromosome Conformation Capture Procedure

  2021cites this paper
• RUNX1-mediated alphaherpesvirus-host trans-species chromatin interaction promotes viral transcription

  2021cites this paper
• A complex CTCF binding code defines TAD boundary structure and function

  2021cites this paper
• Adenine DNA methylation, 3D genome organization, and gene expression in the parasite Trichomonas vaginalis

  2020cites this paper
• Chromosome Conformation Capture That Detects Novel Cis- and Trans-Interactions in Budding Yeast.

  2020cites this paper
• Regulação pré- e pós-transcricional do gene Scratch2 durante a neurogênese no tubo neural posterior.

  2019cites this paper
• MYC Distant Enhancers Underlie Ovarian Cancer Susceptibility at the 8q24.21 Locus

  2018cites this paper
• Microfluidics-Based Chromosome Conformation Capture (3C) Technology for Examining Chromatin Organization with a Low Quantity of Cells.

  2018cites this paper
• In trans promoter activation by enhancers in transient transfection.

  2017cites this paper
• A cautionary note on the use of chromosome conformation capture in plants

  2017cites this paper
• Chromatin landscape of D4Z4 repeat interactome reveals a muscle atrophy signature in Facioscapulohumeral Dystrophy

  2017cites this paper
• UvA-DARE ( Digital Academic Repository ) A cautionary note on the use of chromosome conformation capture in plants

  2017cites this paper
• Mechanistic insights into the effect of RUNX1/ETO knockdown in t(8;21) AML

  2017cites this paper
• A systematic enhancer screen using lentivector transgenesis identifies conserved and non-conserved functional elements at the Olig 1 and Olig 2 locus FRIEDLI

  2017cites this paper
• The identification of hematopoietic-specific regulatory elements for WASp gene expression

  2016cites this paper
• Chromosome Conformation Capture in Primary Human Cells.

  2016cites this paper
• Interactions between mitochondrial and nuclear DNA in mammalian cells are non-random.

  2016cites this paper
• Linking genome organization to nuclear function in astrocytes and muscle cells

  2016cites this paper
• Novel insights into gene silencing mechanisms in Zea mays and Arabidopsis thaliana

  2016influential citation
• Long noncoding RNA TUG1 is downregulated in non-small cell lung cancer and can regulate CELF1 on binding to PRC2

  2016cites this paper
• Formaldehyde Crosslinking: A Tool for the Study of Chromatin Complexes*

  2015cites this paper
• INSIGHTS INTO THE FUNCTIONAL THREE-DIMENSIONAL ORGANIZATION OF PROKARYOTIC AND EUKARYOTIC GENOMES IN RESPONSE TO ENVIRONMENTAL STIMULI AND CELL CYCLE PROGRESSION

  2015cites this paper
• Mechanism of regulation of ‘chromosome kissing’ induced by Fob1 and its physiological significance

  2015cites this paper
• Anthrax Susceptibility: Human Genetic Polymorphisms Modulating ANTXR2 Expression

  2015cites this paper
• A piggyBac insertion disrupts Foxl2 expression that mimics BPES syndrome in mice.

  2014cites this paper
• Long-range DNA interactions at the IL-1/IL-36/IL-37 gene cluster (2q13) are induced by activation of monocytes.

  2014cites this paper
• The PPARγ Locus Makes Long-Range Chromatin Interactions with Selected Tissue-Specific Gene Loci during Adipocyte Differentiation in a Protein Kinase A Dependent Manner

  2014cites this paper
• Chromatin Structure in NT 2 / D 1 Cells Mediates PRC 2-Repressive Higher-Order Cluster Silencing and HOXA CTCF Controls

  2014cites this paper
• CTCF Controls HOXA Cluster Silencing and Mediates PRC2-Repressive Higher-Order Chromatin Structure in NT2/D1 Cells

  2014cites this paper
• fourSig: a method for determining chromosomal interactions in 4C-Seq data

  2014cites this paper
• Computational identification and analysis of evolutionary breakpoint regions in amniote genomes

  2014cites this paper
• The Three-Dimensional Structure of the Cystic Fibrosis Locus: A Dissertation

  2014cites this paper
• H2A.Z-dependent crosstalk between enhancer and promoter regulates Cyclin D1 expression

  2013cites this paper
• Quantitative analysis of genomic element interactions by molecular colony technique

  2013cites this paper
• Allele-specific chromosome conformation and its association with allelic expression bias

  2013cites this paper
• TIP48/Reptin and H2A.Z Requirement for Initiating Chromatin Remodeling in Estrogen-Activated Transcription

  2013cites this paper
• Actual Ligation Frequencies in the Chromosome Conformation Capture Procedure

  2013cites this paper
• Disclosure of a structural milieu for the proximity ligation reveals the elusive nature of an active chromatin hub

  2013cites this paper
• Transcription of the AML1/ETO chimera is guided by the P2 promoter of the AML1 gene in the Kasumi-1 cell line.

  2012cites this paper
• CTCF Mediates the Cell-Type Specific Spatial Organization of the Kcnq5 Locus and the Local Gene Regulation

  2012cites this paper
• 3C Technologies in plants.

  2012cites this paper
• Quantitative chromosome conformation capture.

  2012cites this paper
• Analysis of muscle gene transcription in cultured skeletal muscle cells.

  2012cites this paper
• Higher-Order Chromatin Regulation and Differential Gene Expression in the Human Tumor Necrosis Factor/Lymphotoxin Locus in Hepatocellular Carcinoma Cells

  2012cites this paper
• Dynamic nature of active chromatin hubs

  2011cites this paper
• Transcriptional regulation and spatial organisation of the human AML1/RUNX1 gene

  2011cites this paper
• Chromosome Conformation Capture Uncovers Potential Genome-Wide Interactions between Human Conserved Non-Coding Sequences

  2011cites this paper
• A Boundary Element Between Tsix and Xist Binds the Chromatin Insulator Ctcf and Contributes to Initiation of X-Chromosome Inactivation

  2011cites this paper
• Scattered regulatory regions of the chicken immunoglobulin-β gene and two adjacent promoters of ubiquitously expressed genes interact with the immunoglobulin-β promoter in DT40 cells.

  2011cites this paper
• Mapping of INS promoter interactions reveals its role in long-range regulation of SYT8 transcription

  2011cites this paper
• Investigating Tissue factor gene regulation using the Chromosome Conformation Capture (3C) technique

  2011cites this paper
• Insulator elements mediate long-range interactions between polycomb targets and between active enhancers in Drosophila

  2011cites this paper
• Keeping the genome in shape : a role for protein and RNA

  2011cites this paper
• Computing chromosome conformation.

  2010cites this paper
• Mapping Networks of Protein‐Mediated Physical Interactions Between Chromatin Elements

  2010cites this paper
• Mapping of the nuclear matrix-bound chromatin hubs by a new M3C experimental procedure

  2010cites this paper
• Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene

  2010cites this paper
• Lineage-specific combinatorial action of enhancers regulates mouse erythroid Gata1 expression.

  2010cites this paper
• A Systematic Enhancer Screen Using Lentivector Transgenesis Identifies Conserved and Non-Conserved Functional Elements at the Olig1 and Olig2 Locus

  2010cites this paper
• From DEPARTMENT OF BIOSCIENCES AND NUTRITION Karolinska Institutet, Stockholm, Sweden ROLES OF C-MYC IN THE REGULATION OF rDNA TRANSCRIPTION BY RNA POLYMERASE I

  2010cites this paper
• Transcription Factories and Spatial Organization of Eukaryotic Genomes

  2010cites this paper
• Androgen-induced TOP2B mediated double strand breaks and prostate cancer gene rearrangements

  2010cites this paper
• Regulation of protocadherin gene expression by multiple neuron-restrictive silencer elements scattered in the gene cluster

  2010cites this paper
• Determining spatial chromatin organization of large genomic regions using 5C technology.

  2009cites this paper
• A rapid simple approach to quantify chromosome conformation capture

  2009cites this paper
• UvA-DARE ( Digital Academic Repository ) Studying physical chromatin interactions in plants using Chromosome Conformation Capture ( 3 C )

  2009cites this paper
• c-Myc induces changes in higher order rDNA structure on stimulation of quiescent cells

  2009cites this paper
• Formaldehyde‐assisted isolation of regulatory elements

  2009cites this paper
• Chromatin conformation signatures of cellular differentiation

  2009cites this paper
• Combined 3C-ChIP-cloning (6C) assay: a tool to unravel protein-mediated genome architecture.

  2009cites this paper
• Chromosome conformation capture (from 3C to 5C) and its ChIP-based modification.

  2009influential citation
• Characterization of an ectopic beta-globin LCR: Good neighbors and a distant friend

  2009influential citation
• Chromatin Immunoprecipitation Assays

  2009cites this paper
• Detection of gene loops by 3C in yeast.

  2009cites this paper
• TMEM8 – a non-globin gene entrapped in the globin web

  2009cites this paper
• Lactogenic Hormonal Induction of Long Distance Interactions between β-Casein Gene Regulatory Elements*

  2009cites this paper
• Analysis of Long-Range Chromosomal Interactions in Saccharomyces cerevisiae : A Dissertation

  2009influential citation
• Yeast Silent Mating Type Loci Form Heterochromatic Clusters through Silencer Protein-Dependent Long-Range Interactions

  2009cites this paper
• Functional characterization of an allergy-associated regulatory variant at the human IL13 locus

  2009cites this paper
• Architectural roles of multiple chromatin insulators at the human apolipoprotein gene cluster

  2009cites this paper
• Transcription and Chromatin Organization of a Housekeeping Gene Cluster Containing an Integrated β-Globin Locus Control Region

  2008cites this paper
• Higher order chromatin structure at the X-inactivation center via looping DNA.

  2008cites this paper
• A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations.

  2008cites this paper
• MafK/NF-E2 p18 is required for beta-globin genes activation by mediating the proximity of LCR and active beta-globin genes in MEL cell line.

  2008cites this paper
• Spatial configuration of the chicken α-globin gene domain: immature and active chromatin hubs

  2008influential citation
• chromatin conformations A novel 6 C assay uncovers Polycomb-mediated higher order Material Supplemental

  2008cites this paper
• Study of spatial organization of chicken α-globin gene domain by 3c technique

  2008cites this paper
• Transcription-Dependent Gene Looping of the HIV-1 Provirus Is Dictated by Recognition of Pre-mRNA Processing Signals

  2008cites this paper
• Functional long-range interactions of the IgH 3′ enhancers with the bcl-2 promoter region in t(14;18) lymphoma cells

  2008cites this paper
• The major architects of chromatin: architectural proteins in bacteria, archaea and eukaryotes.

  2008cites this paper