Intrahost Genetic Diversity of Bacterial Symbionts Exhibits Evidence of Mixed Infections and Recombinant Haplotypes

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Molecular biology and evolution

• Publication date

  2017-11-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1093/molbev/msx188PMID 29106592
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Mechanisms of Horizontal Cell-to-Cell Transfer of Wolbachia spp. in Drosophila melanogaster

  2017cited by this paper
• Divergent extremes but convergent recovery of bacterial and archaeal soil communities to an ongoing subterranean coal mine fire

  2017influential reference
• Vectors as Epidemiological Sentinels: Patterns of Within-Tick Borrelia burgdorferi Diversity

  2016cited by this paper
• On the Analysis of Intrahost and Interhost Viral Populations: Human Cytomegalovirus as a Case Study of Pitfalls and Expectations

  2016cited by this paper
• Mode and Fidelity of Bacterial Symbiont Transmission and Its Impact on Symbiont Genome Evolution

  2016cited by this paper
• Estimating Symbiont Abundances and Gill Surface Areas in Specimens of the Hydrothermal Vent Mussel Bathymodiolus puteoserpentis Maintained in Pressure Vessels

  2016cited by this paper
• Genetic Drift during Systemic Arbovirus Infection of Mosquito Vectors Leads to Decreased Relative Fitness during Host Switching.

  2016cited by this paper
• Host Plant Determines the Population Size of an Obligate Symbiont (Buchnera aphidicola) in Aphids

  2016cited by this paper
• Revised Estimates for the Number of Human and Bacteria Cells in the Body

  2016cited by this paper
• Within-host evolution of bacterial pathogens

  2016cited by this paper
• Genome reduction and potential metabolic complementation of the dual endosymbionts in the whitefly Bemisia tabaci

  2015cited by this paper
• Lineage-Specific Patterns of Genome Deterioration in Obligate Symbionts of Sharpshooter Leafhoppers

  2015cited by this paper
• Intraspecific Variation in Microbial Symbiont Communities of the Sun Sponge, Hymeniacidon heliophila, from Intertidal and Subtidal Habitats

  2015cited by this paper
• Fine-scale diversity and extensive recombination in a quasisexual bacterial population occupying a broad niche

  2015cited by this paper
• The ecology of the microbiome: Networks, competition, and stability

  2015cited by this paper
• Within-host Competition Does Not Select for Virulence in Malaria Parasites; Studies with Plasmodium yoelii

  2015cited by this paper
• Heritable symbiosis: The advantages and perils of an evolutionary rabbit hole

  2015cited by this paper
• Identification of Population Bottlenecks and Colonization Factors during Assembly of Bacterial Communities within the Zebrafish Intestine

  2015cited by this paper
• Tracking Dengue Virus Intra-host Genetic Diversity during Human-to-Mosquito Transmission

  2015cited by this paper
• Frequency-based haplotype reconstruction from deep sequencing data of bacterial populations

  2015cited by this paper
• Endosymbionts escape dead hydrothermal vent tubeworms to enrich the free-living population

  2015cited by this paper
• Defensive symbioses of animals with prokaryotic and eukaryotic microorganisms.

  2015cited by this paper
• Molecular evidence for ongoing complementarity and horizontal gene transfer in endosymbiotic systems of mealybugs

  2014cited by this paper
• LESS IS MORE: SELECTIVE ADVANTAGES CAN EXPLAIN THE PREVALENT LOSS OF BIOSYNTHETIC GENES IN BACTERIA

  2014cited by this paper
• Why are most organelle genomes transmitted maternally?

  2014cited by this paper
• Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data

  2014cited by this paper
• Settling Down: The Genome of Serratia symbiotica from the Aphid Cinara tujafilina Zooms in on the Process of Accommodation to a Cooperative Intracellular Life

  2014cited by this paper
• Divining the Essence of Symbiosis: Insights from the Squid-Vibrio Model

  2014cited by this paper
• Sympatric speciation in a bacterial endosymbiont results in two genomes with the functionality of one.

  2014cited by this paper
• Implications of streamlining theory for microbial ecology

  2014cited by this paper
• Genome Degeneration and Adaptation in a Nascent Stage of Symbiosis

  2014cited by this paper
• Differential Genome Evolution Between Companion Symbionts in an Insect-Bacterial Symbiosis

  2014cited by this paper
• R: A language and environment for statistical computing.

  2014cited by this paper
• The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis

  2014influential reference
• Genomic versatility and functional variation between two dominant heterotrophic symbionts of deep-sea Osedax worms

  2013cited by this paper
• The complete mitochondrial genome of Solemya velum (Mollusca: Bivalvia) and its relationships with Conchifera

  2013influential reference
• Animals in a bacterial world, a new imperative for the life sciences

  2013cited by this paper
• Metabolic niche of a prominent sulfate-reducing human gut bacterium

  2013cited by this paper
• Physical Proximity May Promote Lateral Acquisition of Bacterial Symbionts in Vesicomyid Clams

  2013cited by this paper
• Pervasive Genetic Hitchhiking and Clonal Interference in 40 Evolving Yeast Populations

  2013cited by this paper
• Within-Host Selection Is Limited by an Effective Population of Streptococcus pneumoniae during Nasopharyngeal Colonization

  2013cited by this paper
• Purifying Selection and Molecular Adaptation in the Genome of Verminephrobacter, the Heritable Symbiotic Bacteria of Earthworms

  2012cited by this paper
• Cultivation of unculturable soil bacteria.

  2012cited by this paper
• The Occurrence of Mixed Infections of Symbiodinium (Dinoflagellata) within Individual Hosts

  2012cited by this paper
• The Application of Ecological Theory Toward an Understanding of the Human Microbiome

  2012cited by this paper
• Hydrogen is an energy source for hydrothermal vent symbioses

  2011cited by this paper
• Serratia symbiotica from the Aphid Cinara cedri: A Missing Link from Facultative to Obligate Insect Endosymbiont

  2011cited by this paper
• PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

  2011influential reference
• Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads.

  2011influential reference
• MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

  2011cited by this paper
• A framework for variation discovery and genotyping using next-generation DNA sequencing data

  2011cited by this paper
• Optimized filtering reduces the error rate in detecting genomic variants by short-read sequencing

  2011cited by this paper
• Life cycle and population dynamics of a protective insect symbiont reveal severe bottlenecks during vertical transmission

  2010cited by this paper
• One Bacterial Cell, One Complete Genome

  2010influential reference
• Evolution of the mutation rate.

  2010cited by this paper
• The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria

  2009cited by this paper
• Lack of endosymbiont release by two Lucinidae (Bivalvia) of the genus Codakia: consequences for symbiotic relationships.

  2009cited by this paper
• Genetic Subdivision of Chemosynthetic Endosymbionts of Solemya velum along the Southern New England Coast

  2009cited by this paper
• The Sequence Alignment/Map format and SAMtools

  2009cited by this paper
• Within-host competitive exclusion among species of the anther smut pathogen

  2009cited by this paper
• Pyrosequencing analysis of endosymbiont population structure: co-occurrence of divergent symbiont lineages in a single vesicomyid host clam.

  2009cited by this paper
• Choosing BLAST options for better detection of orthologs as reciprocal best hits

  2008influential reference
• A large genome center's improvements to the Illumina sequencing system

  2008cited by this paper
• Learning how to live together: genomic insights into prokaryote–animal symbioses

  2008cited by this paper
• Population Structure of Vibrio fischeri within the Light Organs of Euprymna scolopes Squid from Two Oahu (Hawaii) Populations

  2008cited by this paper
• 3D FISH for the quantification of methane- and sulphur-oxidizing endosymbionts in bacteriocytes of the hydrothermal vent mussel Bathymodiolus azoricus

  2008cited by this paper
• Do vertically transmitted symbionts co‐existing in a single host compete or cooperate? A modelling approach

  2008cited by this paper
• PAML 4: phylogenetic analysis by maximum likelihood.

  2007influential reference
• Bacterial morphology: why have different shapes?

  2007cited by this paper
• Extensive Variation in Intracellular Symbiont Community Composition among Members of a Single Population of the Wood-Boring Bivalve Lyrodus pedicellatus (Bivalvia: Teredinidae)

  2006cited by this paper
• Marine Chemosynthetic Symbioses

  2006cited by this paper
• Bacterial endosymbioses in Solemya (Mollusca: Bivalvia)—Model systems for studies of symbiont–host adaptation

  2006cited by this paper
• Identification of the population

  2006cited by this paper
• Horizontal endosymbiont transmission in hydrothermal vent tubeworms

  2006cited by this paper
• Virulence and competitive ability in genetically diverse malaria infections.

  2005cited by this paper
• Molecular signatures of natural selection.

  2005cited by this paper
• Tackling the population genetics of clonal and partially clonal organisms.

  2005cited by this paper
• Mobile genetic elements: the agents of open source evolution

  2005cited by this paper
• FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

  2004cited by this paper
• Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

  2003cited by this paper
• Strain‐specific regulation of intracellular Wolbachia density in multiply infected insects

  2003cited by this paper
• High levels of multiple Wolbachia infection and recombination in the ant Formica exsecta.

  2003cited by this paper
• Developmental Origin and Evolution of Bacteriocytes in the Aphid–Buchnera Symbiosis

  2003influential reference
• Estimating Population Size and Transmission Bottlenecks in Maternally Transmitted Endosymbiotic Bacteria

  2002cited by this paper
• Dual symbiosis in the cold-seep thyasirid clam Maorithyas hadalis from the hadal zone in the Japan Trench, western Pacific

  2001cited by this paper
• BIOINFORMATICS APPLICATIONS NOTE

  2001cited by this paper
• Detecting bottlenecks and selective sweeps from DNA sequence polymorphism.

  2000cited by this paper
• Genomic copy number of intracellular bacterial symbionts of aphids varies in response to developmental stage and morph of their host.

  2000cited by this paper
• Gill filament differentiation and experimental colonization by symbiotic bacteria in aposymbiotic juveniles of Codakia orbicularis (Bivalvia: Lucinidae)

  1998cited by this paper
• Distortion of allele frequency distributions provides a test for recent population bottlenecks.

  1998cited by this paper
• Phylogenetic mapping of bacterial morphology.

  1998cited by this paper
• Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity

  1998cited by this paper
• Vertical transmission of chemoautotrophic symbionts in the bivalve Solemya velum (Bivalvia: Protobranchia).

  1996cited by this paper
• Host–symbiont conflict over the mixing of symbiotic lineages

  1996cited by this paper
• Statistical properties of a DNA sample under the finite-sites model.

  1996cited by this paper
• Accelerated evolution and Muller's rachet in endosymbiotic bacteria.

  1996cited by this paper
• Phylogenetic identification and in situ detection of individual microbial cells without cultivation.

  1995cited by this paper
• Intracellular coexistence of methano- and thioautotrophic bacteria in a hydrothermal vent mussel.

  1995cited by this paper
• Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses.

  1985cited by this paper
• Properties of a neutral allele model with intragenic recombination.

  1983cited by this paper

• Intrahost mutational dynamics parallel long-term genome evolution in endosymbionts

  2026influential citation
• Mixed Wolbachia infections resolve rapidly during in vitro evolution

  2024cites this paper
• Ecological differences among hydrothermal vent symbioses may drive contrasting patterns of symbiont population differentiation

  2023cites this paper
• Multiomics Analyses Reveal the Complexity of Interaction between Two Strains of Magnaporthe oryzae.

  2023cites this paper
• Ecological differences among hydrothermal vent symbioses may drive contrasting patterns of symbiont population differentiation

  2023cites this paper
• University of Groningen Native parasitoids and a novel invasive host: linking evolutionary ecology and biological pest control Kruitwagen, Astrid

  2022cites this paper
• Community diversity is associated with intra-species genetic diversity and gene loss in the human gut microbiome

  2022cites this paper
• A regulatory hydrogenase gene cluster observed in the thioautotrophic symbiont of Bathymodiolus mussel in the East Pacific Rise

  2022cites this paper
• Native parasitoids and a novel invasive host: linking evolutionary ecology and biological pest control

  2022cites this paper
• Host mixotrophy, habitat stability and recombination may all decrease geographic differentiation between symbiont populations in Western Pacific deep-sea mussels

  2022cites this paper
• Gene Transfer Agents in Bacterial Endosymbionts of Microbial Eukaryotes

  2022cites this paper
• Extensive Horizontal Gene Transfer within and between Species of Coagulase-Negative Staphylococcus

  2021cites this paper
• Ecological Stability Emerges at the Level of Strains in the Human Gut Microbiome

  2021cites this paper
• The coral symbiont Candidatus Aquarickettsia is variably abundant in threatened Caribbean acroporids and transmitted horizontally

  2021cites this paper
• Altered gene expression profile of Wolbachia pipientis wAlbB strain following transinfection from its native host Aedes albopictus to Aedes aegypti cells

  2020cites this paper
• Vibrio-bivalve interactions in health and disease.

  2020cites this paper
• Trends in Symbiont-Induced Host Cellular Differentiation.

  2020cites this paper
• Functional diversity enables multiple symbiont strains to coexist in deep-sea mussels

  2019cites this paper
• Horizontal transmission and recombination maintain forever young bacterial symbiont genomes

  2019cites this paper
• Transmission mode is associated with environment type and taxa across bacteria-eukaryote symbioses: a systematic review and meta-analysis

  2019cites this paper
• Currency, Exchange, and Inheritance in the Evolution of Symbiosis.

  2019cites this paper
• Early steps in the evolution of vertical transmission revealed by a plant-bacterium symbiosis

  2019cites this paper
• A symbiont's guide to the germline.

  2019cites this paper
• Strain diversity and evolution in endosymbionts of Bathymodiolus mussels

  2019influential citation
• Polyclonal symbiont populations in hydrothermal vent tubeworms and the environment

  2019cites this paper
• Adaptations and evolution of a heritable leaf nodule symbiosis between Dioscorea sansibarensis and Orrella dioscoreae

  2019cites this paper
• Continued Susceptibility of the wMel Wolbachia Infection in Aedes aegypti to Heat Stress Following Field Deployment and Selection

  2018cites this paper
• Bivalve Chemosymbioses on Mudflats

  2018cites this paper
• Correction: Wolbachia and host germline components compete for kinesin-mediated transport to the posterior pole of the Drosophila oocyte

  2018cites this paper
• Evolutionary dynamics of bacteria in the gut microbiome within and across hosts

  2018cites this paper
• Transmission strategies in a chemosynthetic symbiosis: detection and quantification of symbionts in host tissues and their environment

  2018cites this paper
• Transmission mode is associated with environment type and taxa across bacteria-eukaryote symbioses

  2018cites this paper
• The genome of an endosymbiotic methanogen is very similar to those of its free‐living relatives

  2018cites this paper
• Wolbachia and host germline components compete for kinesin-mediated transport to the posterior pole of the Drosophila oocyte

  2018cites this paper
• : Early steps in the evolution of vertical transmission revealed by a plant-bacterium symbiosis

  year unknowncites this paper