Data Mining Techniques for the Life Sciences

No abstract is available for this paper.

• Publication year

  2009

• Venue

  Methods in Molecular Biology

• Publication date

  2009-12-14

• Fields of study

  Biology, Computer Science

• Identifiers
  DOI 10.1007/978-1-4939-3572-7
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Resource: A comprehensive catalogue of human RNA-binding protein reagents

  2016cited by this paper
• Classification of Protein Kinases Influenced by Conservation of Substrate Binding Residues.

  2016cited by this paper
• Stochastic model of homogeneous coding and latent periodicity in DNA sequences.

  2016influential reference
• The Recipe for Protein Sequence-Based Function Prediction and Its Implementation in the ANNOTATOR Software Environment.

  2016cited by this paper
• ABC transporter PEN3/PDR8/ABCG36 interacts with calmodulin that, like PEN3, is required for Arabidopsis nonhost resistance.

  2016cited by this paper
• Comparative Protein Structure Modeling Using MODELLER

  2016cited by this paper
• Protein Residue Contacts and Prediction Methods.

  2016cited by this paper
• 진단검사의 특성 평가를 위한 Receiver Operating Characteristic (ROC) 곡선의 활용

  2016cited by this paper
• Review of alignment and SNP calling algorithms for next-generation sequencing data

  2016cited by this paper
• Datamining with Ontologies.

  2016cited by this paper
• KnowEnG: a knowledge engine for genomics

  2015cited by this paper
• Cryo-EM: A Unique Tool for the Visualization of Macromolecular Complexity.

  2015cited by this paper
• VariSNP, A Benchmark Database for Variations From dbSNP

  2015cited by this paper
• Dimerization and thiol sensitivity of the salicylic acid binding thimet oligopeptidases TOP1 and TOP2 define their functions in redox-sensitive cellular pathways

  2015cited by this paper
• MitImpact: an Exhaustive Collection of Pre‐computed Pathogenicity Predictions of Human Mitochondrial Non‐synonymous Variants

  2015cited by this paper
• Advances and applications of single-cell sequencing technologies.

  2015cited by this paper
• Homology-Independent Metrics for Comparative Genomics

  2015cited by this paper
• HPMV: Human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes

  2015cited by this paper
• dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity

  2015cited by this paper
• Nanopore-based Fourth-generation DNA Sequencing Technology

  2015cited by this paper
• Single‐residue posttranslational modification sites at the N‐terminus, C‐terminus or in‐between: To be or not to be exposed for enzyme access

  2015cited by this paper
• Statistical Approaches to Detecting and Analyzing Tandem Repeats in Genomic Sequences

  2015influential reference
• The Pfam protein families database: towards a more sustainable future

  2015cited by this paper
• The integrated Rule-Oriented Data System (iRODS 4.0) Microservice Workbook

  2015cited by this paper
• CONFOLD: Residue‐residue contact‐guided ab initio protein folding

  2015cited by this paper
• Protein function from its emergence to diversity in contemporary proteins

  2015cited by this paper
• DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis

  2015cited by this paper
• The NIH BD2K center for big data in translational genomics

  2015cited by this paper
• Most partial domains in proteins are alignment and annotation artifacts

  2015cited by this paper
• Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies.

  2015cited by this paper
• Databases of Transcription Factors in Legumes

  2015cited by this paper
• Oxidative post-translational modifications of cysteine residues in plant signal transduction.

  2015cited by this paper
• Typical and atypical domain combinations in human protein kinases: functions, disease causing mutations and conservation in other primates

  2015cited by this paper
• The principles of whole-cell modeling.

  2015cited by this paper
• Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network.

  2015cited by this paper
• A Comparison of Variant Calling Pipelines Using Genome in a Bottle as a Reference

  2015cited by this paper
• The multifaceted roles of intrinsic disorder in protein complexes

  2015cited by this paper
• Big Data: Astronomical or Genomical?

  2015cited by this paper
• Ten years of pan-genome analyses.

  2015cited by this paper
• Big Challenges? Big Data …

  2015cited by this paper
• The role of ontologies in biological and biomedical research: a functional perspective

  2015cited by this paper
• DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference

  2015cited by this paper
• The Evaluation of Tools Used to Predict the Impact of Missense Variants Is Hindered by Two Types of Circularity

  2015cited by this paper
• HPOSim: An R Package for Phenotypic Similarity Measure and Enrichment Analysis Based on the Human Phenotype Ontology

  2015cited by this paper
• The GPMDB REST interface

  2015cited by this paper
• PaPI: pseudo amino acid composition to score human protein-coding variants

  2015cited by this paper
• Molecular systems governing leaf growth: from genes to networks.

  2015cited by this paper
• Genome-wide characterization of developmental stage- and tissue-specific transcription factors in wheat

  2015cited by this paper
• Multiscale digital Arabidopsis predicts individual organ and whole-organism growth

  2014cited by this paper
• Opportunities and limitations in applying coevolution-derived contacts to protein structure prediction

  2014cited by this paper
• Improving the chances of successful protein structure determination with a random forest classifier.

  2014cited by this paper
• De Novo Structure Prediction of Globular Proteins Aided by Sequence Variation-Derived Contacts

  2014cited by this paper
• Aber-OWL: a framework for ontology-based data access in biology

  2014cited by this paper
• VNTRseek—a computational tool to detect tandem repeat variants in high-throughput sequencing data

  2014influential reference
• Introducing protein intrinsic disorder.

  2014cited by this paper
• The relationship between classification of multi-domain proteins using an alignment-free approach and their functions: a case study with immunoglobulins.

  2014cited by this paper
• Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics

  2014cited by this paper
• PredictSNP: Robust and Accurate Consensus Classifier for Prediction of Disease-Related Mutations

  2014cited by this paper
• Analysis of the human diseasome using phenotype similarity between common, genetic, and infectious diseases

  2014cited by this paper
• MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins

  2014cited by this paper
• CATH: comprehensive structural and functional annotations for genome sequences

  2014cited by this paper
• Circadian regulation of gene expression: at the crossroads of transcriptional and post-transcriptional regulatory networks.

  2014cited by this paper
• Machine learning applications in proteomics research: How the past can boost the future

  2014cited by this paper
• Improving Contact Prediction along Three Dimensions

  2014cited by this paper
• Assessment of protein disorder region predictions in CASP10

  2014cited by this paper
• An Arabidopsis Gene Regulatory Network for Secondary Cell Wall Synthesis

  2014cited by this paper
• The semantic measures library and toolkit: fast computation of semantic similarity and relatedness using biomedical ontologies

  2014cited by this paper
• CCMpred—fast and precise prediction of protein residue–residue contacts from correlated mutations

  2014cited by this paper
• Prediction of intrinsic disorder in proteins using MFDp2.

  2014cited by this paper
• Plant proteomics: from genome sequencing to proteome databases and repositories.

  2014cited by this paper
• Enzymatic mechanism of GPI anchor attachment clarified

  2014cited by this paper
• The Sol Genomics Network (SGN)—from genotype to phenotype to breeding

  2014cited by this paper
• A method for increasing expressivity of Gene Ontology annotations using a compositional approach

  2014cited by this paper
• Toward better drug repositioning: prioritizing and integrating existing methods into efficient pipelines.

  2014cited by this paper
• SMART: recent updates, new developments and status in 2015

  2014cited by this paper
• PROMALS3D: multiple protein sequence alignment enhanced with evolutionary and three-dimensional structural information.

  2014cited by this paper
• Combining Physicochemical and Evolutionary Information for Protein Contact Prediction

  2014cited by this paper
• Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns

  2014cited by this paper
• MutationTaster2: mutation prediction for the deep-sequencing age

  2014cited by this paper
• On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation

  2014cited by this paper
• Relating the metatranscriptome and metagenome of the human gut

  2014cited by this paper
• The PDB_REDO server for macromolecular structure model optimization

  2014cited by this paper
• An automated infrastructure to support high-throughput bioinformatics

  2014cited by this paper
• Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters

  2014cited by this paper
• Plant proteomics methods to reach low-abundance proteins.

  2014cited by this paper
• Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome

  2014cited by this paper
• CDD: NCBI's conserved domain database

  2014cited by this paper
• Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter”

  2014cited by this paper
• EFIN: predicting the functional impact of nonsynonymous single nucleotide polymorphisms in human genome

  2014cited by this paper
• FreeContact: fast and free software for protein contact prediction from residue co-evolution

  2014cited by this paper
• Phylogenetics and the Human Microbiome

  2014cited by this paper
• Orione, a web-based framework for NGS analysis in microbiology

  2014cited by this paper
• PredPPCrys: Accurate Prediction of Sequence Cloning, Protein Production, Purification and Crystallization Propensity from Protein Sequences Using Multi-Step Heterogeneous Feature Fusion and Selection

  2014influential reference
• PconsFold: improved contact predictions improve protein models

  2014cited by this paper
• Multidimensional mutual information methods for the analysis of covariation in multiple sequence alignments

  2014cited by this paper
• UniProt: a hub for protein information

  2014cited by this paper
• SSpro/ACCpro 5: almost perfect prediction of protein secondary structure and relative solvent accessibility using profiles, machine learning and structural similarity

  2014influential reference
• ncPred: ncRNA-Disease Association Prediction through Tripartite Network-Based Inference

  2014cited by this paper
• Human symptoms–disease network

  2014cited by this paper
• Fast pseudolikelihood maximization for direct-coupling analysis of protein structure from many homologous amino-acid sequences

  2014cited by this paper

• The first exome wide association study in Tunisia: identification of candidate loci and pathways with biological relevance for type 2 diabetes

  2023cites this paper
• Reducing readmission rates for individuals discharged from acute psychiatric care in Alberta using peer and text message support: Protocol for an innovative supportive program

  2022cites this paper
• A Novel Strategy to Identify Prognosis-Relevant Gene Sets in Cancers

  2022cites this paper
• Improving Web-Based Treatment Intake for Multiple Mental and Substance Use Disorders by Text Mining and Machine Learning: Algorithm Development and Validation

  2022cites this paper
• Detection of Chilling Injury in Pickling Cucumbers Using Dual-Band Chlorophyll Fluorescence Imaging

  2021cites this paper
• A broad comparative genomics approach to understanding the pathogenicity of Complex I mutations

  2021cites this paper
• Monitoring urban expansion using SVM classification approach in Khenifra city (Morocco)

  2021cites this paper
• Machine Learning Applications and Optimization of Clustering Methods Improve the Selection of Descriptors in Blackberry Germplasm Banks

  2021cites this paper
• Protein Model and Function Analysis in Quorum-Sensing Pathway of Vibrio qinghaiensis sp.-Q67

  2021cites this paper
• FOPR test: a virtual reality-based technique to assess field of perception and field of regard in hemispatial neglect

  2021cites this paper
• Cyclist Effort Features: A Novel Technique for Image Texture Characterization Applied to Larynx Cancer Classification in Contact Endoscopy—Narrow Band Imaging

  2021influential citation
• Prediction of Drug-Induced Liver Toxicity Using SVM and Optimal Descriptor Sets

  2021cites this paper
• Blink Rate Patterns Provide a Reliable Measure of Individual Engagement with Scene Content

  2020cites this paper
• Differential evolution algorithm of soft island model based on K-means clustering

  2020cites this paper
• A deep learning algorithm to translate and classify cardiac electrophysiology: From induced pluripotent stem cell-derived cardiomyocytes to adult cardiac cells

  2020cites this paper
• The Classification Performance and Mechanism of Machine Learning Algorithms in Winter Wheat Mapping Using Sentinel-2 10 m Resolution Imagery

  2020influential citation
• Binding Profile Mapping of the S100 Protein Family Using a High-throughput Local Surface Mimetic Holdup Assay

  2020cites this paper
• UTILIZATION OF SVM IN THE SOUNDNESS EVALUATION OF REINFORCED CONCRETE SLAB BRIDGE

  2020cites this paper
• Machine Learning Approach for Detecting News Agencies' Linguistic Style in Arabic

  2020cites this paper
• Prilagodba sadržaja mrežnih stranica za internetske tražilice pomoću strojnoga učenja i obrade prirodnoga jezika

  2019cites this paper
• SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update

  2019cites this paper
• Himalayan Saccharomyces eubayanus Genome Sequences Reveal Genetic Markers Explaining Heterotic Maltotriose Consumption by Saccharomyces pastorianus Hybrids

  2019cites this paper
• Integrative Modeling of a Sin3/HDAC Complex Sub-structure

  2019cites this paper
• STOCHASTIC MODELS FOR DESCRIPTION OF STRUCTURAL-STATISTICAL PROPERTIES IN DNA SEQUENCES.

  2019cites this paper
• Flavivirus Species Recognition Based On the Polyprotein Coding Sequences

  2019cites this paper
• Spectral and textural analysis of high resolution data for the automatic detection of grape vine diseases. (Analyses spectrale et texturale de données haute résolution pour la détection automatique des maladies de la vigne)

  2019cites this paper
• Genetic characterization of suspected MODY patients in Tunisia by targeted next-generation sequencing

  2019cites this paper
• Parameter investigation of support vector machine classifier with kernel functions

  2019cites this paper
• Towards a gamete matching platform: using immunogenetics and artificial intelligence to predict recurrent miscarriage

  2019cites this paper
• Optimization Performance Comparison of Three Different Group Intelligence Algorithms on a SVM for Hyperspectral Imagery Classification

  2019influential citation
• Protein melting temperature cannot fully assess whether protein folding free energy underlies the universal abundance-evolutionary rate correlation seen in proteins.

  2019cites this paper
• Point Shear Wave Elastography Using Machine Learning to Differentiate Renal Cell Carcinoma and Angiomyolipoma.

  2019cites this paper
• Improved algorithms for quantifying the near symmetry of proteins: complete side chains analysis

  2019cites this paper
• Akan Veri Karakterizasyonu, Üretimi Ve Analitiği Üzerine Kapsamlı Bir İnceleme

  2019cites this paper
• Total Ambient Dose Equivalent Buildup Factor Determination for Nbs04 Concrete

  2018cites this paper
• A supervised learning approach for heading detection

  2018cites this paper
• Characterizing bumblebees activity patterns using computer vision

  2018influential citation
• Dynamic itemset hiding under multiple support thresholds (Çoklu destek eşiklerinde dinamik sık kümeler gizlemesi)

  2018cites this paper
• A survey: facial micro-expression recognition

  2018cites this paper
• Evaluating the lexico-grammatical differences in the writing of native and non-native speakers of English in peer-reviewed medical journals in the field of pediatric oncology: Creation of the genuine index scoring system

  2017cites this paper
• Continuous Authentication With Touch Behavioral Biometrics and Voice on Wearable Glasses

  2017cites this paper
• Stacked Denoising and Stacked Convolutional Autoencoders. An Evaluation of Transformation Robustness for Spatial Data Representations

  2017cites this paper
• Classifying three imaginary states of the same upper extremity using time-domain features

  2017cites this paper
• Chiral Ramachandran Plots I: Glycine.

  2017cites this paper
• Menggunakan Representasi ALE-index sebagai Invariant Nucleotida sequence dan Support Vector Machine

  2017cites this paper
• Global computational mutagenesis provides a critical stability framework in protein structures

  2017cites this paper
• Automated detection of handovers using kinematic features

  2017cites this paper
• Prediction of code lifetime

  2017cites this paper
• DeNovo: virus-host sequence-based protein-protein interaction prediction

  2016cites this paper
• Assessment of Breastfeeding practices in Ethiopia using different data mining

  2016cites this paper
• Mapping Irrigated and Rainfed Wheat Areas Using Multi-Temporal Satellite Data

  2016cites this paper
• Predicting metamorphic relations for testing scientific software: a machine learning approach using graph kernels

  2016cites this paper
• A multi-dimensional statistical rainfall threshold for deep landslides based on groundwater recharge and support vector machines

  2016cites this paper
• Perceptual quality prediction on authentically distorted images using a bag of features approach

  2016cites this paper
• Empirical Prediction of Leaf Area Index (LAI) of Endangered Tree Species in Intact and Fragmented Indigenous Forests Ecosystems Using WorldView-2 Data and Two Robust Machine Learning Algorithms

  2016cites this paper
• Crop type mapping in a highly fragmented and heterogeneous agricultural landscape: A case of central Iran using multi-temporal Landsat 8 imagery

  2016cites this paper
• When proteins are completely hydrated in crystals.

  2016cites this paper
• Remote sensing of endangered tree species in the fragmented Dukuduku Indigenous Forest of KwaZulu-Natal, South Africa.

  2016cites this paper
• Application of Machine Learning to Identify State Drivers

  2015cites this paper
• Socio-economic and Climate Factors Associated with Dengue Fever Spatial Heterogeneity: A Worked Example in New Caledonia

  2015cites this paper
• Leveraging Advanced Analytics Techniques for Medical Systematic Review Update

  2015cites this paper
• Application of kernel principal component analysis to multi-characteristic parameter design problems

  2015cites this paper
• Analysis of Spectrum Occupancy Using Machine Learning Algorithms

  2015cites this paper
• RoADS: A Road Pavement Monitoring System for Anomaly Detection Using Smart Phones

  2015cites this paper
• Contextual occupancy detection for smart office by pattern recognition of electricity consumption data

  2015cites this paper
• Increasing the Accuracy of Opinion Mining in Arabic

  2015influential citation
• Effectiveness of Random Search in SVM hyper-parameter tuning

  2015cites this paper
• Classification of normal and medical renal disease using B-mode ultrasound images

  2015cites this paper
• Many InChIs and quite some feat

  2015cites this paper
• Recognition of handwritten characters using local gradient feature descriptors

  2015cites this paper
• A Gesture-Based Interaction Approach for Manipulating Augmented Objects Using Leap Motion

  2015cites this paper
• Data Mining in Pathway Analysis for Gene Expression

  2015cites this paper
• Matthias Sköld/A Topography of Personal Preferences

  2015cites this paper
• Improvement implementation a software to analysis polysomnography signal

  2015cites this paper
• Smart Management of PEV Charging Enhanced by PEV Load Forecasting

  2015cites this paper
• The benefits of using otolith weight in statistical fish age classification: A case study of Atlantic cod species

  2014cites this paper
• Risk prediction with genomic data

  2014cites this paper
• Statistical sex determination from craniometrics: Comparison of linear discriminant analysis, logistic regression, and support vector machines.

  2014cites this paper
• Automatic classification of physical defects in green coffee beans using CGLCM and SVM

  2014cites this paper
• Studying the Effects of 2D and 3D Educational Contents on Memory Recall Using EEG Signals, PCA and Statistical Features

  2014cites this paper
• Large Scale Empirical Comparison of Linear Classifiers for Multi-class Problems

  2014cites this paper
• Predictive Models for Hospital Bed Management Using Data Mining Techniques

  2014cites this paper
• Long Intergenic Non-Coding RNAs (LincRNAs) Identified by RNA-Seq in Breast Cancer

  2014cites this paper
• Biomedical Text Mining: State-of-the-Art, Open Problems and Future Challenges

  2014cites this paper
• A Reliable Method for Rhythm Analysis during Cardiopulmonary Resuscitation

  2014cites this paper
• Motifs tree: a new method for predicting post-translational modifications

  2014cites this paper
• A hybrid intelligent system for diagnosing microalbuminuria in type 2 diabetes patients without having to measure urinary albumin

  2014cites this paper