Expression profiling in primates reveals a rapid evolution of human transcription factors

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Nature

• Publication date

  2006-03-09

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1038/nature04559PMID 16525476
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Bioinformatics and Computational Biology Solutions Using R and Bioconductor

  2007cited by this paper
• Bioinformatics and Computational Biology Solutions Using R and Bioconductor

  2006cited by this paper
• The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans

  2005cited by this paper
• A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression

  2005cited by this paper
• Natural selection on protein-coding genes in the human genome

  2005cited by this paper
• Toward a Neutral Evolutionary Model of Gene Expression

  2005cited by this paper
• limma: Linear Models for Microarray Data

  2005cited by this paper
• Parallel Patterns of Evolution in the Genomes and Transcriptomes of Humans and Chimpanzees

  2005cited by this paper
• Functional Evolution of a cis-Regulatory Module

  2005cited by this paper
• RATES OF DIVERGENCE IN GENE EXPRESSION PROFILES OF PRIMATES, MICE, AND FLIES: STABILIZING SELECTION AND VARIABILITY AMONG FUNCTIONAL CATEGORIES

  2005cited by this paper
• Inhibitory effect of tumor suppressor p33(ING1b) and its synergy with p53 gene in hepatocellular carcinoma.

  2005cited by this paper
• Identification and investigation of methylated genes in hepatoma.

  2005cited by this paper
• Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles.

  2005cited by this paper
• Regional patterns of gene expression in human and chimpanzee brains.

  2004cited by this paper
• Common pattern of evolution of gene expression level and protein sequence in Drosophila.

  2004cited by this paper
• CharacteristicscDNA Microarray: Data Mining and Interspecific Hybridization Development and Application of a Salmonid EST Database and

  2004cited by this paper
• Frequent downregulation and loss of WWOX gene expression in human hepatocellular carcinoma

  2004cited by this paper
• Expression of copper-transporting P-type adenosine triphosphatase (ATP7B) in human hepatocellular carcinoma.

  2004cited by this paper
• A Neutral Model of Transcriptome Evolution

  2004cited by this paper
• Elevated gene expression levels distinguish human from non-human primate brains

  2003cited by this paper
• Allele-specific Holliday junction formation: a new mechanism of allelic discrimination for SNP scoring.

  2003cited by this paper
• Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes.

  2003cited by this paper
• Estimation of divergence times for major lineages of primate species.

  2003cited by this paper
• Mixed-model reanalysis of primate data suggests tissue and species biases in oligonucleotide-based gene expression profiles.

  2003cited by this paper
• Comparative analysis of gene-expression patterns in human and African great ape cultured fibroblasts.

  2003cited by this paper
• Phylogenetic Shadowing of Primate Sequences to Find Functional Regions of the Human Genome

  2003cited by this paper
• Sex-Dependent Gene Expression and Evolution of the Drosophila Transcriptome

  2003cited by this paper
• Evolution of gene expression in the Drosophila melanogaster subgroup

  2003cited by this paper
• Mixed-Effects Models in S and S-PLUS

  2002cited by this paper
• Intra- and Interspecific Variation in Primate Gene Expression Patterns

  2002cited by this paper
• Mixed-Effects Models in S and S-PLUS

  2001cited by this paper
• Controlling the false discovery rate: a practical and powerful approach to multiple testing

  1995cited by this paper
• Evolution at two levels in humans and chimpanzees.

  1975cited by this paper
• Recovery of inter-block information when block sizes are unequal

  1971cited by this paper

• Gene function predicts divergence across molecular levels

  2026cites this paper
• Neural plasticity, heterochrony, and the onto-phylogeny of consciousness

  2025cites this paper
• Unveiling cell-type-specific mode of evolution in comparative single-cell expression data.

  2025cites this paper
• Divergent Evolutionary Rates of Primate Brain Regions as Revealed by Genomics and Transcriptomics

  2024cites this paper
• Ancient eukaryotic protein interactions illuminate modern genetic traits and disorders

  2024cites this paper
• Accounting for cis-regulatory constraint prioritizes genes likely to affect species-specific traits

  2023cites this paper
• The relationship between regulatory changes in cis and trans and the evolution of gene expression in humans and chimpanzees

  2023cites this paper
• Tropomyosin Isoform Diversity in the Cynomolgus Monkey Heart and Skeletal Muscles Compared to Human Tissues

  2023cites this paper
• Identification of constrained sequence elements across 239 primate genomes

  2023cites this paper
• Benchmark of Differential Gene Expression Analysis Methods for Inter-species RNA-Seq Data using a Phylogenetic Simulation Framework

  2022cites this paper
• Is Genome Instability a Significant Cause of Aging? A Review

  2022cites this paper
• Embryoid bodies facilitate comparative analysis of gene expression in humans and chimpanzees across dozens of cell types

  2022cites this paper
• A Phylogenetic Framework to Simulate Synthetic Interspecies RNA-Seq Data

  2022cites this paper
• Detecting signatures of selection on gene expression

  2022cites this paper
• Coexpression reveals conserved gene programs that co-vary with cell type across kingdoms

  2022cites this paper
• Urbanization drives adaptive evolution in a Neotropical bird

  2022cites this paper
• Evolution of pathogenicity in obligate fungal pathogens and allied genera

  2022cites this paper
• Accounting for cis-regulatory constraint prioritizes genes likely to affect species-specific traits

  2022cites this paper
• Detecting Signatures Of Selection In Regulatory Variation

  2021cites this paper
• Examining adaptive evolution of immune activity: opportunities provided by gastropods 1 in the age of “omics” 2

  2021cites this paper
• Long-range promoter–enhancer contacts are conserved during evolution and contribute to gene expression robustness

  2021influential citation
• Distribution, expression and methylation analysis of positively selected genes provides insights into the evolution in Brassica rapa

  2021cites this paper
• Examining adaptive evolution of immune activity: opportunities provided by gastropods in the age of ‘omics’

  2021cites this paper
• Transcriptome profiling of Lymnaea stagnalis (Gastropoda) for ecoimmunological research

  2021cites this paper
• Polyadenylation-related isoform switching in human evolution revealed by full-length transcript structure

  2021cites this paper
• Rapid evolution of expression levels in hepatocellular carcinoma

  2020influential citation
• Coexpression reveals conserved mechanisms of transcriptional cell identity

  2020cites this paper
• The Research Modernisation Deal

  2020cites this paper
• Interspecies variation in hominid gut microbiota controls host gene regulation

  2020cites this paper
• Linking Features of Genomic Function to Fundamental Features of Learned Vocal Communication

  2020cites this paper
• Evolutionary Transcriptome Analysis Based on Differentially Expressed (DE) Genes

  2020cites this paper
• Speciation and the developmental alarm clock

  2020cites this paper
• Gene expression variability in human and chimpanzee populations share common determinants

  2020cites this paper
• Transcriptome profiling of a multiuse model species Lymnaea stagnalis (Gastropoda) for ecoimmunological research

  2020cites this paper
• Independent evolution of transcript abundance and gene regulatory dynamics

  2020cites this paper
• The Neuroethology of Birdsong

  2020cites this paper
• The evolution of group differences in changing environments

  2020cites this paper
• Microbial control of host gene regulation and the evolution of host–microbiome interactions in primates

  2020cites this paper
• Differential Hsp90-dependent gene expression is strain-specific and common among yeast strains

  2020cites this paper
• Local adaptation contributes to gene expression divergence in maize

  2020cites this paper
• Evaluating chromatin accessibility differences across multiple primate species using a joint modelling approach

  2019cites this paper
• Estimating the strength of expression conservation from high throughput RNA-seq data

  2019cites this paper
• Evaluating Chromatin Accessibility Differences Across Multiple Primate Species Using a Joint Modeling Approach

  2019cites this paper
• Evolution of DNA Methylation in Papio Baboons

  2019cites this paper
• TreeExp2: An Integrated Framework for Phylogenetic Transcriptome Analysis

  2019cites this paper
• Multilevel evolutionary developmental optimization (MEDO): A theoretical framework for understanding preferences and selection dynamics

  2019cites this paper
• Genetic diversity underlying behavioral plasticity in human adaptation.

  2019cites this paper
• Reorganization of 3D genome structure may contribute to gene regulatory evolution in primates

  2018cites this paper
• Dissecting complex phenotypes via multiple transcriptome-based GWAS

  2018cites this paper
• Universality in the Evolution of Molecular Phenotypes

  2018cites this paper
• Title Human-specific features of spatial gene expression andregulation in eight brain regions

  2018cites this paper
• Evolutionary signatures for unearthing functional elements in the human transcriptome

  2018cites this paper
• Cis‐regulator runaway and divergence in asexuals

  2018cites this paper
• Evolution of DNA methylation in Papio baboons

  2018cites this paper
• Angiogenic patterning by STEEL, an endothelial-enriched long noncoding RNA

  2018cites this paper
• Lineage-Specific Expression Divergence in Grasses Is Associated with Male Reproduction, Host-Pathogen Defense, and Domestication

  2018cites this paper
• Post-translational buffering leads to convergent protein expression levels between primates

  2018cites this paper
• The naked ape as an evolutionary model, 50 years later

  2018cites this paper
• Cell Type and Species-specific Patterns in Neuronal and Non-neuronal Methylomes of Human and Chimpanzee Cortices

  2018cites this paper
• Human-specific features of spatial gene expression and regulation in eight brain regions

  2018cites this paper
• Transcriptional control mechanisms in the wall of the urinary bladder. Myocardin family coactivators and the transcriptomic impact of denervation.

  2018cites this paper
• Brownian model of transcriptome evolution and phylogenetic network visualization between tissues.

  2017cites this paper
• Hypoxia Inducible Factor (HIF) transcription factor family expansion, diversification, divergence and selection in eukaryotes

  2017cites this paper
• Adaptive Evolution of Gene Expression in Drosophila.

  2017influential citation
• Evolutionary Genomics in Daphnia

  2017cites this paper
• Advancing Biomedical Research and Regulatory Policies for Human and Animal Health

  2017cites this paper
• Impacts of Neanderthal-Introgressed Sequences on the Landscape of Human Gene Expression.

  2017cites this paper
• The Impact of Modern Medicine on Human Evolution

  2017cites this paper
• Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS

  2017cites this paper
• Evolution of transcript modification by N6-methyladenosine in primates.

  2017cites this paper
• Natural Selection has Shaped Coding and Non-coding Transcription in Primate CD4+ T-cells

  2016cites this paper
• Widespread and Adaptive Alterations in Genome-Wide Gene Expression Associated with Ecological Divergence of Two Oryza Species.

  2016cites this paper
• Evolution of Gene Regulation in Humans.

  2016cites this paper
• Tissue-Driven Hypothesis of Transcriptome Evolution: An Update

  2016cites this paper
• Understanding tissue expression evolution: from expression phylogeny to phylogenetic network

  2016cites this paper
• Evolution of new regulatory functions on biophysically realistic fitness landscapes

  2016cites this paper
• Epigenetic mechanisms and associated brain circuits in the regulation of positive emotions: A role for transposable elements

  2016cites this paper
• Compétition pour la transcription et évolution de l'expression génétique chez les diploïdes

  2016cites this paper
• Analysis of synaptic gene expression in the neocortex of primates reveals evolutionary changes in glutamatergic neurotransmission.

  2015cites this paper
• Pervasive adaptation of gene expression in Drosophila

  2015cites this paper
• Phylogenetic ANOVA: The Expression Variance and Evolution Model for Quantitative Trait Evolution.

  2015cites this paper
• Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein–Uhlenbeck Models

  2015cites this paper
• Preisverleihung 2014 STIFTUNG PROFESSOR DR. MAX CLOËTTA

  2015cites this paper
• Comprehensive mapping of mammalian transcriptomes identifies conserved genes associated with different cell differentiation states

  2015cites this paper
• The Genetic and Mechanistic Basis for Variation in Gene Regulation

  2015cites this paper
• Enhancer Runaway and the Evolution of Diploid Gene Expression

  2015cites this paper
• Epigenetic and Genetic Alterations Affect the WWOX Gene in Head and Neck Squamous Cell Carcinoma

  2015cites this paper
• Examining Selective Pressures Shaping Retrotransposon Distribution Within Genes

  2014cites this paper
• The genetic architecture of gene expression levels in wild baboons

  2014cites this paper
• Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR)

  2014cites this paper
• Phylogenetic and Genetic Analysis of Scleractinia Corals Using Mitochondrial Co 1 Sequences-A Bioinformatics Approach

  2014cites this paper
• Epigenetic modifications are associated with inter-species gene expression variation in primates

  2014cites this paper
• Large-scale tag/PCR-based gene expression profiling

  2014cites this paper
• Identifying adaptive and plastic gene expression levels using a unified model for expression variance between and within species

  2014cites this paper
• Comparative metabolomics in primates reveals the effects of diet and gene on metabolic divergence.

  2014cites this paper
• Phylogenetic ANOVA: The Expression Variance and Evolution (EVE) model for quantitative trait evolution

  2014cites this paper
• Microarray-Based Investigations in Cancer

  2014cites this paper
• Comparative studies of gene regulatory mechanisms.

  2014cites this paper
• Comparative metabolomics in primates reveals the effects of diet and gene regulatory variation on metabolic divergence

  2014cites this paper
• THE NEUTRAL DIVERGENCE OF QUANTITATIVE TRAITS

  2014cites this paper