High-throughput discovery of novel developmental phenotypes

M. Dickinson,A. Flenniken,Xiao Ji,L. Teboul,M. Wong,Jacqueline K. White,T. Meehan,W. Weninger,Henrik Westerberg,H. Adissu,Candice N. Baker,Lynette R. Bower,James M. Brown,L. B. Caddle,Francesco Chiani,Dave Clary,James Cleak,M. Daly,J. Denegre,B. Doe,M. Dolan,Sarah Edie,H. Fuchs,V. Gailus-Durner,A. Galli,A. Gambadoro,Juan J. Gallegos,Shiying Guo,N. Horner,Chih-Wei Hsu,S. Johnson,Sowmya Kalaga,L. C. Keith,L. Lanoue,Thomas N. Lawson,M. Lek,M. Mark,S. Marschall,J. Mason,Melissa L. McElwee,S. Newbigging,L. Nutter,Kevin A. Peterson,R. Ramírez‐Solís,D. Rowland,E. Ryder,K. Samocha,J. Seavitt,M. Selloum,Zsombor Szoke-Kovacs,Masaru Tamura,Amanda G. Trainor,Ilinca Tudose,S. Wakana,Jonathan Warren,O. Wendling,David B. West,Leeyean Wong,A. Yoshiki,M. Mckay,Barbara Urban,C. Lund,Erin D. Froeter,Taylor LaCasse,A. Mehalow,Emily R. Gordon,L. Donahue,R. Taft,P. Kutney,S. Dion,L. Goodwin,S. Kales,Rachel Urban,K. Palmer,F. Pertuy,D. Bitz,Bruno Weber,Patrice Goetz-Reiner,Hughes Jacobs,E. le Marchand,Amal El Amri,Leila El Fertak,Hamid Ennah,D. Ali-Hadji,A. Ayadi,Marie Wattenhofer-Donzé,S. Jacquot,P. André,M. Birling,G. Pavlovic,T. Sorg,Iva Frank Morse Benso,Iva Morse,Frank Benso,Michelle E. Carol Jackie Samantha Stewart Copley Harrison Joynson,M. Stewart,Caroline Copley,J. Harrison,Sam Joynson,Ruolin Guo,D. Qu,S. Spring,Lisa Yu,J. Ellegood,L. Morikawa,Xueyuan Shang,P. Feugas,A. Creighton,P. Castellanos Pentón,Ozge Danisment,Nicola Griggs,Catherine Tudor,A. Green,Cecilia Icoresi Mazzeo,E. Siragher,Charlotte Lillistone,E. Tuck,Diane Gleeson,Debarati Sethi,Tanya Bayzetinova,Jonathan Burvill,Bishoy Habib,Lauren Weavers,R. Maswood,Evelina Miklejewska,Michael Woods,E. Grau,Stuart Newman,Caroline Sinclair,Ellen Brown,Shinya Mizuho Ayumi Ayabe Iwama Murakami,Shinya Ayabe,Mizuho Iwama,A. Murakami,W. Wurst,D. MacArthur,G. Tocchini-Valentini,Xiang Gao,Paul Flicek,A. Bradley,W. Skarnes,M. Justice,H. Parkinson,Mark W. Moore,S. Wells,R. Braun,K. Svenson,M. H. de Angelis,Y. Hérault,T. Mohun,A. Mallon,R. Henkelman,Steve D. M. Brown,D. Adams,K. Lloyd,C. McKerlie,A. Beaudet,M. Bucan,S. Murray

Published 2016 in Nature

ABSTRACT

Approximately one-third of all mammalian genes are essential for life. Phenotypes resulting from knockouts of these genes in mice have provided tremendous insight into gene function and congenital disorders. As part of the International Mouse Phenotyping Consortium effort to generate and phenotypically characterize 5,000 knockout mouse lines, here we identify 410 lethal genes during the production of the first 1,751 unique gene knockouts. Using a standardized phenotyping platform that incorporates high-resolution 3D imaging, we identify phenotypes at multiple time points for previously uncharacterized genes and additional phenotypes for genes with previously reported mutant phenotypes. Unexpectedly, our analysis reveals that incomplete penetrance and variable expressivity are common even on a defined genetic background. In addition, we show that human disease genes are enriched for essential genes, thus providing a dataset that facilitates the prioritization and validation of mutations identified in clinical sequencing efforts.

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