Learning to Fish with Genetics: A Primer on the Vertebrate Model Danio rerio

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Genetics

• Publication date

  2016-06-27

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1534/genetics.116.190843PMID 27384027PMCID PMC4937470
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Spontaneous Neuronal Network Dynamics Reveal Circuit’s Functional Adaptations for Behavior

  2015cited by this paper
• Labeling of active neural circuits in vivo with designed calcium integrators

  2015cited by this paper
• Whole-field visual motion drives swimming in larval zebrafish via a stochastic process

  2015cited by this paper
• A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo.

  2015cited by this paper
• Making sense of anti-sense data.

  2015cited by this paper
• Visuomotor Transformations Underlying Hunting Behavior in Zebrafish

  2015cited by this paper
• Reverse genetic screening reveals poor correlation between morpholino-induced and mutant phenotypes in zebrafish.

  2015cited by this paper
• Zebrafish reporter lines reveal in vivo signaling pathway activities involved in pancreatic cancer

  2014cited by this paper
• Zebrafish models in translational research: tipping the scales toward advancements in human health

  2014cited by this paper
• Wild Sex in Zebrafish: Loss of the Natural Sex Determinant in Domesticated Strains

  2014cited by this paper
• Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair

  2014cited by this paper
• Growth and maturation in the zebrafish, Danio rerio: a staging tool for teaching and research.

  2014cited by this paper
• Cas9-based genome editing in zebrafish.

  2014cited by this paper
• Mapping brain activity at scale with cluster computing

  2014cited by this paper
• Multiple genome modifications by the CRISPR/Cas9 system in zebrafish

  2014cited by this paper
• Spotlight on Zebrafish: Translational Impact

  2014cited by this paper
• Pancreatic adenocarcinoma.

  2014cited by this paper
• A Zebrafish Compound Screen Reveals Modulation of Neutrophil Reverse Migration as an Anti-Inflammatory Mechanism

  2014cited by this paper
• Hierarchy of Neural Organization in the Embryonic Spinal Cord: Granger-Causality Graph Analysis of In Vivo Calcium Imaging Data

  2014cited by this paper
• Genome editing using artificial site‐specific nucleases in zebrafish

  2014cited by this paper
• TAILOR: Transgene Activation and Inactivation Using Lox and Rox in Zebrafish

  2013cited by this paper
• Analysis of the African coelacanth genome sheds light on tetrapod evolution

  2013cited by this paper
• Two-photon imaging of neural population activity in zebrafish.

  2013cited by this paper
• Inhibitors of neutrophil recruitment identified using transgenic zebrafish to screen a natural product library

  2013cited by this paper
• Zebrafish cardiac injury and regeneration models: a noninvasive and invasive in vivo model of cardiac regeneration.

  2013cited by this paper
• Germ cells are required to maintain a stable sexual phenotype in adult zebrafish.

  2013cited by this paper
• Enhancer and gene traps for molecular imaging and genetic analysis in zebrafish

  2013cited by this paper
• MMAPPR: Mutation Mapping Analysis Pipeline for Pooled RNA-seq

  2013cited by this paper
• Two-photon calcium imaging during fictive navigation in virtual environments

  2013cited by this paper
• Zebrafish sex: a complicated affair

  2013cited by this paper
• A large-scale zebrafish gene knockout resource for the genome-wide study of gene function

  2013cited by this paper
• Exxon Valdez to Deepwater Horizon: comparable toxicity of both crude oils to fish early life stages.

  2013cited by this paper
• Natural History of Zebrafish (Danio rerio) in India

  2013influential reference
• RNA-seq–based mapping and candidate identification of mutations from forward genetic screens

  2013cited by this paper
• Report Real-Time Visualization of Neuronal Activity during Perception

  2013cited by this paper
• Heritable and Precise Zebrafish Genome Editing Using a CRISPR-Cas System

  2013cited by this paper
• Analyzing the structure and function of neuronal circuits in zebrafish

  2013cited by this paper
• The zebrafish reference genome sequence and its relationship to the human genome

  2013influential reference
• The Population and Evolutionary Dynamics of Phage and Bacteria with CRISPR–Mediated Immunity

  2013influential reference
• Impact of Daily Thermocycles on Hatching Rhythms, Larval Performance and Sex Differentiation of Zebrafish

  2012cited by this paper
• Validation of visualized transgenic zebrafish as a high throughput model to assay bradycardia related cardio toxicity risk candidates

  2012cited by this paper
• Germ cells are not the primary factor for sexual fate determination in goldfish.

  2012cited by this paper
• The hypoblast (visceral endoderm): an evo-devo perspective

  2012cited by this paper
• Reverse genetic approaches in zebrafish.

  2012influential reference
• Only women with symptoms need to have their breast implants removed, says government

  2012cited by this paper
• Breaking symmetry: The zebrafish as a model for understanding left‐right asymmetry in the developing brain

  2012cited by this paper
• Conditional control of gene function by an invertible gene trap in zebrafish

  2012cited by this paper
• Behavioral genetics in larval zebrafish: Learning from the young

  2012cited by this paper
• Graph Theoretical Model of a Sensorimotor Connectome in Zebrafish

  2012cited by this paper
• zfishbook: connecting you to a world of zebrafish revertible mutants

  2011cited by this paper
• Heritable gene targeting in zebrafish using customized TALENs

  2011cited by this paper
• Engineering zinc finger nucleases for targeted mutagenesis of zebrafish.

  2011cited by this paper
• Conserved synteny and the zebrafish genome.

  2011cited by this paper
• Original Research in the Classroom: Why Do Zebrafish Spawn in the Morning?

  2011cited by this paper
• Investigating the genetics of visual processing, function and behaviour in zebrafish

  2011cited by this paper
• Chemical screen identifies FDA-approved drugs and target pathways that induce precocious pancreatic endocrine differentiation

  2011cited by this paper
• Screening pancreatic oncogenes in zebrafish using the Gal4/UAS system.

  2011cited by this paper
• PhiC31 integrase induces efficient site-specific excision in zebrafish

  2011cited by this paper
• Zebrafish Bioassay-Guided Natural Product Discovery: Isolation of Angiogenesis Inhibitors from East African Medicinal Plants

  2011cited by this paper
• Multicolor Brainbow imaging in zebrafish.

  2011cited by this paper
• An SNP-Based Linkage Map for Zebrafish Reveals Sex Determination Loci

  2011cited by this paper
• Genetic screens for mutations affecting adult traits and parental-effect genes.

  2011cited by this paper
• ΦC31 Integrase Mediates Efficient Cassette Exchange in the Zebrafish Germline

  2011cited by this paper
• Advances in zebrafish husbandry and management.

  2011influential reference
• in vivo protein trapping produces a functional expression codex of the vertebrate proteome

  2011cited by this paper
• The genetics of ocular disorders: insights from the zebrafish.

  2011cited by this paper
• Differential detergent fractionation of eukaryotic cells.

  2011cited by this paper
• Early differences in epithalamic left-right asymmetry influence lateralization and personality of adult zebrafish.

  2010cited by this paper
• Genome editing with engineered zinc finger nucleases

  2010cited by this paper
• FLPe functions in zebrafish embryos

  2010cited by this paper
• Transgene excision in zebrafish using the phiC31 integrase

  2010cited by this paper
• Essential genes for astroglial development and axon pathfinding during zebrafish embryogenesis

  2010cited by this paper
• A genetic screen for vascular mutants in zebrafish reveals dynamic roles for Vegf/Plcg1 signaling during artery development.

  2009cited by this paper
• Normal table of postembryonic zebrafish development: Staging by externally visible anatomy of the living fish

  2009cited by this paper
• A Primer for Morpholino Use in Zebrafish

  2009cited by this paper
• An Account of the Fishes Found in the River Ganges and Its Branches

  2009cited by this paper
• Determining the function of zebrafish epithalamic asymmetry

  2009cited by this paper
• Molecular phylogenetic interrelationships of the south Asian cyprinid genera Danio, Devario and Microrasbora (Teleostei, Cyprinidae, Danioninae)

  2009cited by this paper
• Synchronisation to light and feeding time of circadian rhythms of spawning and locomotor activity in zebrafish.

  2009cited by this paper
• Heritable T Cell Malignancy Models Established in a Zebrafish Phenotypic Screen

  2009cited by this paper
• Materials for Zebrafish Research Outreach Activities in National Institute for Environmental Studies, Japan

  2009cited by this paper
• Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish

  2008cited by this paper
• Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases

  2008cited by this paper
• Probing Pineal‐specific Gene Expression with Transgenic Zebrafish †

  2008cited by this paper
• Production of a maternal‐zygotic medaka mutant using hybrid sterility

  2008cited by this paper
• Connexin43 (GJA1) is required in the population of dividing cells during fin regeneration.

  2008cited by this paper
• The angiogenic effects of Angelica sinensis extract on HUVEC in vitro and zebrafish in vivo

  2008cited by this paper
• Using retroviruses as a mutagenesis tool to explore the zebrafish genome.

  2008cited by this paper
• PCB126 exposure disrupts zebrafish ventricular and branchial but not early neural crest development.

  2008cited by this paper
• Xenogenesis in Teleost Fish Through Generation of Germ-Line Chimeras by Single Primordial Germ Cell Transplantation1

  2008cited by this paper
• Heritable Targeted Gene Disruption in Zebrafish Using Designed Zinc Finger Nucleases

  2008cited by this paper
• A technicolour approach to the connectome

  2008cited by this paper
• Transposons as tools for enhancer trap screens in vertebrates

  2007cited by this paper
• Tol2: a versatile gene transfer vector in vertebrates

  2007cited by this paper
• The Tol2kit: A multisite gateway‐based construction kit for Tol2 transposon transgenesis constructs

  2007cited by this paper
• Sensorimotor Gating in Larval Zebrafish

  2007cited by this paper
• Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions

  2007cited by this paper
• Automated, quantitative screening assay for antiangiogenic compounds using transgenic zebrafish.

  2007cited by this paper
• The behaviour and ecology of the zebrafish, Danio rerio

  2007cited by this paper
• Na+/Ca2+-K+ Exchangers (NCKX):Functional Properties and Physiological Roles

  2007cited by this paper

• Integrative QSAR and q-RASAR models for Danio rerio acute toxicity from short-term exposures: Mechanistic insights and data gap filling.

  2025cites this paper
• A decade of MPTP-based zebrafish research in Parkinson’s disease: toward translational understanding

  2025cites this paper
• Human-specific gene expansions contribute to brain evolution.

  2025cites this paper
• Zebrafishology, study design guidelines for rigorous and reproducible data using zebrafish

  2025cites this paper
• Animal-based approaches to understanding neuroglia physiology in vitro and in vivo.

  2025cites this paper
• Optimizing gRNA selection for high-penetrance F0 CRISPR screening for interrogating disease gene function

  2025cites this paper
• The Potential of Zebrafish Larvae and Water Vortex Protocols in Stress Biology

  2025cites this paper
• Repurposing model organisms in neuroscience: What is the purpose?

  2025cites this paper
• Human-specific gene expansions contribute to brain evolution

  2024cites this paper
• Adaptation of the In Situ Hybridization Method for Working with Embryos and Larvae of Modern Representatives of Phylogenetically Ancient Groups of Vertebrates: Lampreys, Cartilaginous Fishes and Sturgeons

  2024cites this paper
• Genética del metabolismo lipídico en la biología del desarrollo de la aterosclerosis

  2024cites this paper
• In Search of a Target Gene for a Desirable Phenotype in Aquaculture: Genome Editing of Cyprinidae and Salmonidae Species

  2024cites this paper
• Marigold: a machine learning-based web app for zebrafish pose tracking

  2024cites this paper
• New developments in pre-clinical models of ALS to guide translation.

  2024cites this paper
• Early-life challenge enhances cortisol regulation in zebrafish larvae

  2024cites this paper
• Toxicological Aspects and Bioanalysis of Nanoparticles: Zebrafish Model

  2023cites this paper
• Neurotoxicity of Aluminium Chloride and Okadaic Acid in Zebrafish: Insights into Alzheimer's Disease Models through Anxiety and Locomotion Testing, and Acute Toxicity Assessment with Litsea garciae bark's Methanolic Extract

  2023cites this paper
• Translational Neuroscience Approaches to Understanding Autism.

  2023cites this paper
• Rutin hydrate relieves neuroinflammation in zebrafish models: Involvement of NF-κB pathway as a central network.

  2023cites this paper
• Current Animal Model Systems for Ovarian Aging Research

  2022cites this paper
• Zebrafish (Danio rerio) meets bioethics: the 10Rs ethical principles in research

  2022cites this paper
• zMADM (zebrafish mosaic analysis with double markers) for single-cell gene knockout and dual-lineage tracing

  2022cites this paper
• Different wild type strains of zebrafish show divergent susceptibility to TNBS-induced intestinal inflammation displaying distinct immune cell profiles

  2022cites this paper
• Hair cell toxicology: With the help of a little fish

  2022cites this paper
• Single‐shot Mueller‐matrix imaging of zebrafish tissues: In vivo analysis of developmental and pathological features

  2022cites this paper
• The Effects of Early Life Stress on the Brain and Behaviour: Insights From Zebrafish Models

  2021cites this paper
• Recent Application of Zebrafish Models in Atherosclerosis Research

  2021cites this paper
• Cerebrovascular development: mechanisms and experimental approaches

  2021cites this paper
• The Promise of the Zebrafish Model for Parkinson’s Disease: Today’s Science and Tomorrow’s Treatment

  2021cites this paper
• Exploring the alternative: fish, flies and worms as preclinical models for ALS.

  2021cites this paper
• Review: Zebrafish (Danio Rerio) Sebagai Model Obesitas dan Diabetes Melitus Tipe 2

  2021cites this paper
• ROLE OF ITGB1B IN ZEBRAFISH ISLET DEVELOPMENT AND FUNCTION

  2020cites this paper
• Toward a comprehensive model of circuits underlying locomotion: What did we learn from zebrafish?

  2020cites this paper
• Die eukaryotische Zelle und Modellorganismen

  2020cites this paper
• Toxic Effects of Polychlorinated Biphenyl Congeners and Aroclors on Embryonic Growth and Development

  2020cites this paper
• Evaluation of CRISPR gene-editing tools in zebrafish

  2020cites this paper
• Taste and Smell in Zebrafish

  2020cites this paper
• Plant protein-based diets can replace a fish meal-based diet for sustainable growth and body composition of zebrafish

  2020cites this paper
• Behavioral research in zebrafish (Danio rerio): strain as source of variation

  2020cites this paper
• A 13-plex of tetra- and penta-STRs to identify zebrafish

  2020cites this paper
• Forward genetic approach for behavioral neuroscience using animal models

  2020cites this paper
• Cell Kinetics in the Adult Neurogenic Niche and Impact of Diet-Induced Accelerated Aging

  2019cites this paper
• Mathematical Analysis of Melanocyte Patterns on Danio rerio

  2019cites this paper
• EFEK DEKOKTA DAUN Urena lobata TERHADAP KADAR MALONDIALDEHYDE (MDA) OTAK DAN KECEPATAN BERENANG IKAN ZEBRA Danio rerio DEWASA YANG DIPAPAR MALATHION KRONIS

  2019cites this paper
• Inflammation and Matrix Metalloproteinase 9 (Mmp-9) Function in the Zebrafish Retina

  2019influential citation
• A Systems Biology Approach to Advancing Adverse Outcome Pathways for Risk Assessment

  2018cites this paper
• CRISPR-Cas 9 mutagenesis of the zebrafish foxm 1

  2018cites this paper
• Holographie numérique appliquée à l’imagerie 3D rapide de la circulation sanguine chez le poisson-zèbre

  2018cites this paper
• Gene Knockout and Its Principle and Application in Sex Control of Fish Species

  2018cites this paper
• Object Novelty and Object Location Recognition Memory in Fish – Recent Advances

  2018cites this paper
• Use of Genetic Manipulation for Evaluating and Understanding Adverse Outcome Pathways

  2018cites this paper
• Anatomy, development, and plasticity of the neurosecretory hypothalamus in zebrafish

  2018cites this paper
• Determinação da concentração de Chumbo, e outros elementos traço, em tecidos dos peixes-zebra (Danio rerio)

  2017cites this paper
• Development of a Microinjection Platform for the Examination of Host-Biomaterial Interactions in Zebrafish Embryos

  2017cites this paper
• A transgenic zebrafish model for the in vivo study of the blood and choroid plexus brain barriers using claudin 5

  2017cites this paper
• Gene expansions contributing to human brain evolution

  year unknowncites this paper