In silico method for inferring genotypes in pedigrees

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Nature Genetics

• Publication date

  2006-09-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1038/ng1863PMID 16921375PMCID PMC3005330
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2005cited by this paper
• [International HapMap project].

  2005cited by this paper
• Genetic analysis of genome-wide variation in human gene expression

  2004cited by this paper
• Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays

  2004cited by this paper
• The International HapMap Project

  2003cited by this paper
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  2000cited by this paper
• Descent graphs in pedigree analysis: applications to haplotyping, location scores, and marker-sharing statistics.

  1996cited by this paper
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  1996cited by this paper

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