Refined structure of the gene 5 DNA binding protein from bacteriophage fd.

No abstract is available for this paper.

• Publication year

  1983

• Venue

  Journal of Molecular Biology

• Publication date

  1983-09-15

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1016/S0022-2836(83)80065-5PMID 6684697
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A nucleoprotein complex in bacteria infected with PF1 filamentous virus: identification and electron microscopic analysis.

  1982cited by this paper
• Neutron scattering data on reconstituted complexes of fd deoxyribonucleic acid and gene 5 protein show that the deoxyribonucleic acid is near the center.

  1982cited by this paper
• Photochemical cross-linking of the gene 5 protein.fd DNA complex from fd-infected cells.

  1982cited by this paper
• Neutron scattering data on reconstituted complexes of fd deoxyribonucleic acid and gene 5 protein show that the deoxyribonucleic acid is near the center.

  1982cited by this paper
• Double-resonance experiments at 500 MHz on gene-5 protein and its complex with octadeoxyriboadenylic acid.

  1981cited by this paper
• Structure of the fd DNA--gene 5 protein complex in solution. A neutron small-angle scattering study.

  1981cited by this paper
• Physical chemical studies of the structure and function of DNA binding (helix-destabilizing) proteins.

  1980cited by this paper
• A restrained-parameter thermal-factor refinement procedure

  1980cited by this paper
• NMR studies of the interaction of gene-V protein of bacteriophage M13 with oligonucleotides.

  1980cited by this paper
• Protein structure refinement: Streptomyces griseus serine protease A at 1.8 A resolution.

  1979cited by this paper
• Structure at 2.3 A resolution of the gene 5 product of bacteriophage fd: a DNA unwinding protein.

  1979cited by this paper
• A photo-CIDNP study of the interaction of oligonucleotides with gene-5 protein of bacteriophage M13.

  1978cited by this paper
• Tyrosyl-base-phenylalanyl intercalation in gene 5 protein-DNA complexes: proton nuclear magnetic resonance of selectively deuterated gene 5 protein.

  1978cited by this paper
• Studies on DNA Unwinding

  1977cited by this paper
• Studies on DNA unwinding. Proton and phosphorus nuclear-magnetic-resonance studies of gene V protein from bacteriophage M13, interacting with d(pC-G-C-G).

  1977cited by this paper
• Replication of Filamentous Bacteriophages

  1977cited by this paper
• Replication of bacteriophage M13. XII. In vivo cross-linking of a phage-specific DNA binding protein to the single-stranded DNA of bacteriophage M13 by ultraviolet irradiation.

  1977cited by this paper
• A restrained-parameter structure-factor least-squares refinement procedure for large asymmetric units

  1976cited by this paper
• Crystallization of a DNA-unwinding protein: preliminary x-ray analysis of fd bacteriophage gene 5 product.

  1976cited by this paper
• Structure of gene 5 protein-oligodeoxynucleotide complexes as determined by 1H, 19F, and 31P nuclear magnetic resonance.

  1976cited by this paper
• Gene 5 protein of bacteriophage fd: a dimer which interacts co-operatively with DNA.

  1976cited by this paper
• Chemical modifications of functional residues of fd gene 5 DNA-binding protein.

  1975cited by this paper
• Gene V protein of fd bacteriophage. Dimer formation and the role of tyrosyl groups in DNA binding.

  1975cited by this paper
• The single-stranded DNA phages.

  1975cited by this paper
• Complex of bacteriophage M13 single-stranded DNA and gene 5 protein.

  1974cited by this paper
• Oligonucleotides and the quaternary structure of gene‐5 protein from filamentous bacteriophage

  1974cited by this paper
• The amino acid sequence of gene 5 protein of bacteriophage M 13.

  1974cited by this paper
• Circular dichroism and ultraviolet absorption of a deoxyribonucleic acid binding protein of filamentous bacteriophage.

  1973cited by this paper
• Isolation and characterization of gene 5 protein of filamentous bacterial viruses.

  1972cited by this paper
• Properties of the isolated gene 5 protein of bacteriophage fd.

  1972cited by this paper
• Low resolution study of crystalline L-lactate dehydrogenase.

  1969cited by this paper
• The matching of physical models to three-dimensional electron-density maps: a simple optical device.

  1968cited by this paper
• Studies with DNA-cellulose chromatography. I. DNA-binding proteins from Escherichia coli.

  1968cited by this paper
• Stereochemical criteria for polypeptides and proteins. V. Conformation of a system of three linked peptide units

  1968cited by this paper
• A least‐squares refinement method for isomorphous replacement

  1968cited by this paper
• Bias, feedback and reliability in isomorphous phase analysis

  1967cited by this paper
• Stereochemical criteria for polypeptide and protein chain conformations. 3. Helical and hydrogen-bonded polypeptide chains.

  1966cited by this paper
• Stereochemical criteria for polypeptide and protein chain conformations. II. Allowed conformations for a pair of peptide units.

  1965cited by this paper
• THE DESTABILIZING EFFECT OF RIBONUCLEASE ON THE HELICAL DNA STRUCTURE.

  1963cited by this paper
• The crystal structure of myoglobin: Phase determination to a resolution of 2 Å by the method of isomorphous replacement

  1961cited by this paper
• The treatment of errors in the isomorphous replacement method

  1959cited by this paper

• BiomoRphiC poSSiBiliTy in pRoTein STRuCTuReS

  2021cites this paper
• Biomorphic protein Art: The Ensemble of Aesthetic Intuition and Scientific Intelligence in Protein Structures

  2021cites this paper
• Biomorphic Protein Art: The Ensemble of Aesthetic Intuition and Scientific Intelligence in Protein Structures

  2020cites this paper
• Correlated mutations select misfolded from properly folded proteins

  2017cites this paper
• Structure and assembly of filamentous bacteriophages.

  2014cites this paper
• Protein Structure: A DecorAtive DiSPlAy

  2013cites this paper
• Biomorphic Presentation of Proteins: Artistic Science or Scientific Art?

  2013cites this paper
• Hybridization of phosphate‐methylated DNA and natural oligonucleotides. Implications for protein‐induced DNA duplex destabilization

  2010cites this paper
• Sorting the chaff from the wheat at the PDB

  2008cites this paper
• Structure Based Functional Analysis of Bacteriophage f1 Gene V Protein

  2008cites this paper
• Applications of Structural Bioinformatics for the Structural Genomics Era

  2007cites this paper
• Sequence‐structure mapping errors in the PDB: OB‐fold domains

  2004influential citation
• Single-stranded DNA binding protein encoded by the filamentous bacteriophage M13: structural and functional characteristics

  2004cites this paper
• The Three-Dimensional Structure of Canavalin

  2002cites this paper
• Aggregation and self-assembly of hydrophobins from Trichoderma reesei: low-resolution structural models.

  2002cites this paper
• Calculation of Symmetric Oligomer Structures from NMR Data

  2002cites this paper
• Crystallographic studies of bacterial single-stranded DNA-binding proteins

  2001cites this paper
• Identification and functional characterization of a member of the PUR-alpha family from Schistosoma mansoni.

  2000cites this paper
• Structural Evidence for the Evolution of Pyrogenic Toxin Superantigens

  2000cites this paper
• Knowledge‐based interaction potentials for proteins

  1999cites this paper
• The unr Gene: Evolutionary Considerations and Nucleic Acid-Binding Properties of Its Long Isoform Product

  1999cites this paper
• Energy strain in three-dimensional protein structures.

  1998cites this paper
• Common fold, common function, common origin?

  1997cites this paper
• Understanding single-stranded DNA binding proteins: nuclear magnetic resonance and restrained molecular dynamics studies on the M13 and Pf3 proteins and their nucleoprotein complexes

  1997cites this paper
• Analysis of protein-protein interaction sites using surface patches.

  1997cites this paper
• DNA‐binding studies of XSPTSPSZ, derivatives of the intercalating heptad repeat of RNA polymerase II

  1997cites this paper
• Raman spectroscopy of the Ff gene V protein and complexes with poly(dA): nonspecific DNA recognition and binding.

  1996cites this paper
• Destabilizing interactions between the partners of a bifunctional fusion protein.

  1996cites this paper
• Direct measurement of oligonucleotide binding stoichiometry of gene V protein by mass spectrometry.

  1996cites this paper
• The solution structure of the synthetic circular peptide CGVSRQGKPYC. NMR studies of the folding of a synthetic model for the DNA-binding loop of the ssDNA-binding protein encoded by gene V of phage M13.

  1996cites this paper
• Structures of fd gene 5 protein.nucleic acid complexes: a combined solution scattering and electron microscopy study.

  1995cites this paper
• DNA-binding surface of RecA protein photochemical cross-linking of the first DNA binding site on RecA filament.

  1995cites this paper
• Role of Tyr-22 in the binding of Pf3 ssDNA binding protein to nucleic acids.

  1995cites this paper
• Analysis of the DNA binding site of Escherichia coli RecA protein.

  1995cites this paper
• Three-dimensional structure of the single-stranded DNA-binding protein encoded by gene V of the filamentous bacteriophage M13 and a model of its complex with single-stranded DNA

  1995cites this paper
• Engineering the stability and function of gene V protein.

  1995cites this paper
• Solution structure of the single‐stranded DNA binding protein of the filamentous Pseudomonas phage Pf3: similarity to other proteins binding to single‐stranded nucleic acids.

  1995cites this paper
• Site-directed mutagenesis of the M13 gene 5 protein: the role of Arg-21, Tyr-26 and Tyr-41.

  1995cites this paper
• Protein-protein interactions: a review of protein dimer structures.

  1995cites this paper
• Refined solution structure of the Tyr41-->His mutant of the M13 gene V protein. A comparison with the crystal structure.

  1995cites this paper
• Feed-forward neural networks for secondary structure prediction.

  1995cites this paper
• Structure of RecA-DNA complex and mechanism of DNA strand exchange reaction in homologous recombination.

  1994cites this paper
• Crystal Structures of Y41H and Y41F Mutants of Gene V Protein from Ff Phage Suggest Possible Protein-Protein Interactions in the GVP-ssDNA Complex

  1994cites this paper
• A model of the complex between single-stranded DNA and the single-stranded DNA binding protein encoded by gene V of filamentous bacteriophage M13.

  1994cites this paper
• In Search of Protein Folds

  1994cites this paper
• Structural and functional properties of the evolutionarily ancient Y‐box family of nucleic acid binding proteins

  1994cites this paper
• Refined molecular structure of pig pancreatic alpha-amylase at 2.1 A resolution.

  1994cites this paper
• The solution structure of the Tyr41-->His mutant of the single-stranded DNA binding protein encoded by gene V of the filamentous bacteriophage M13.

  1994cites this paper
• Fractal geometry study of DNA binding proteins.

  1994cites this paper
• Crystal structures of Y41H and Y41F mutants of gene V protein from Ff phage suggest possible protein-protein interactions in the GVP-ssDNA complex.

  1994cites this paper
• Probing the informational content of Escherichia coli sigma 70 region 2.3 by combinatorial cassette mutagenesis.

  1994cites this paper
• Crystal structure of CspA, the major cold shock protein of Escherichia coli.

  1994cites this paper
• Studies of the relationship between structure and function of the single-stranded DNA binding protein of the filamentous bacteriophage M13

  1994influential citation
• The beta-ribbon DNA recognition motif.

  1994cites this paper
• Conformational stability of dimeric proteins: Quantitative studies by equilibrium denaturation

  1994cites this paper
• Side‐chain entropy and packing in proteins

  1994cites this paper
• Crystal structure of inorganic pyrophosphatase from Thermus thermophilus

  1994cites this paper
• The Protein Folding Problem and Tertiary Structure Prediction

  1994cites this paper
• Genetic fusion of subunits of a dimeric protein substantially enhances its stability and rate of folding.

  1993cites this paper
• The Three-Dimensional Structure of Canavalin from Jack Bean (Canavalia ensiformis)

  1993cites this paper
• Super‐secondary structures involving triple‐strand β‐sheets

  1993cites this paper
• Lanthanide shift reagents.

  1993cites this paper
• Recognition of errors in three‐dimensional structures of proteins

  1993cites this paper
• A calculation strategy for the structure determination of symmetric demers by 1H NMR

  1993cites this paper
• Characterization of the Pf3 single-strand DNA binding protein by circular dichroism spectroscopy.

  1993cites this paper
• Super-secondary structures involving triple-strand beta-sheets.

  1993cites this paper
• Exploring the DNA binding domain of gene V protein encoded by bacteriophage M13 with the aid of spin-labeled oligonucleotides in combination with 1H-NMR.

  1993cites this paper
• Tyr26 and Phe73 are essential for full biological activity of the Fd gene 5 protein.

  1993cites this paper
• Identification of residues in the single-stranded DNA-binding site of the 8-kDa domain of rat DNA polymerase beta by UV cross-linking.

  1993cites this paper
• Engineering multiple properties of a protein by combinatorial mutagenesis.

  1993cites this paper
• Structure of the gene V protein of bacteriophage f1 determined by multiwavelength x-ray diffraction on the selenomethionyl protein.

  1993cites this paper
• Exploration of the single-stranded DNA-binding domains of the gene V proteins encoded by the filamentous bacteriophages IKe and M13 by means of spin-labeled oligonucleotide and lanthanide-chelate complexes.

  1993cites this paper
• DNA binding properties of the deoxyguanosine triphosphate triphosphohydrolase of Escherichia coli.

  1993cites this paper
• Cloning, expression and in vitro characterisation of the M13 gene 5 protein.

  1993cites this paper
• The targets and genes for antibodies to Z‐DNA

  1993cites this paper
• OB(oligonucleotide/oligosaccharide binding)‐fold: common structural and functional solution for non‐homologous sequences.

  1993cites this paper
• Ribosomal protein S17: characterization of the three-dimensional structure by 1H and 15N NMR.

  1993cites this paper
• Structure in solution of the major cold-shock protein from Bacillus subtilis

  1993cites this paper
• Universal nucleic acid-binding domain revealed by crystal structure of the B. subtilis major cold-shock protein

  1993cites this paper
• Fluorescence studies of the binding of bacteriophage M13 gene V mutant proteins to polynucleotides.

  1992cites this paper
• Identification of the primer binding domain in human immunodeficiency virus reverse transcriptase.

  1992cites this paper
• Characterization of the nucleic acid binding region of adenovirus DNA binding protein by partial proteolysis and photochemical cross-linking.

  1992cites this paper
• Sequence of cDNA comprising the human pur gene and sequence-specific single-stranded-DNA-binding properties of the encoded protein

  1992cites this paper
• Characterization of the nucleic acid-binding activities of the isolated amino-terminal head domain of the intermediate filament protein vimentin reveals its close relationship to the DNA-binding regions of some prokaryotic single-stranded DNA-binding proteins.

  1992cites this paper
• Assignment of the 1H NMR spectrum and secondary structure elucidation of the single-stranded DNA binding protein encoded by the filamentous bacteriophage IKe.

  1992cites this paper
• Taxonomy and conformational analysis of loops in proteins.

  1992cites this paper
• Prediction of protein secondary structure by neural networks: encoding short and long range patterns of amino acid packing.

  1992cites this paper
• The product of unr, the highly conserved gene upstream of N-ras, contains multiple repeats similar to the cold-shock domain (CSD), a putative DNA-binding motif.

  1992cites this paper
• Selection and characterization of randomly produced mutants of gene V protein of bacteriophage M13.

  1992cites this paper
• Physical studies of tyrosine and tryptophan residues in mammalian A1 heterogeneous nuclear ribonucleoprotein. Support for a segmented structure.

  1991cites this paper
• Sequence-specific 1H-NMR assignment and secondary structure of the Tyr41----His mutant of the single-stranded DNA binding protein, gene V protein, encoded by the filamentous bacteriophage M13.

  1991cites this paper
• Reversible denaturation of the gene V protein of bacteriophage f1.

  1991cites this paper
• Circular dichroism and fluorescence analysis of the interaction of Pf1 gene 5 protein with poly(dT).

  1991cites this paper
• Characterization of wild-type and mutant M13 gene V proteins by means of 1H-NMR.

  1991cites this paper
• Energetics of repacking a protein interior.

  1991cites this paper
• The putative single-stranded DNA-binding protein of the filamentous bacteriophage, If1. Amino acid sequence of the protein and structure of the gene

  1991cites this paper
• Temperature-sensitive mutants of adenovirus single-stranded DNA-binding protein. Inability to support DNA replication is associated with an altered DNA-binding activity of the protein.

  1991cites this paper
• Isolation and in vitro characterization of temperature-sensitive mutants of the bacteriophage f1 gene V protein.

  1991cites this paper
• A novel method for the modelling of peptide ligands to their receptors.

  1991cites this paper
• Identification of amino acid residues at interface of protein-nucleic acid complexes by photochemical cross-linking.

  1991cites this paper