Rapid and Reversible Light-Mediated Chromatin Modifications of Arabidopsis Phytochrome A Locus[C][W]

No abstract is available for this paper.

• Publication year

  2011

• Venue

  The Plant Cell

• Publication date

  2011-02-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1105/tpc.110.080481PMID 21317377PMCID PMC3077797
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression

  2010cited by this paper
• Histone methylation in higher plants.

  2010cited by this paper
• The language of histone crosstalk.

  2010cited by this paper
• Chromatin regulation functions in plant abiotic stress responses.

  2010cited by this paper
• Dynamic Landscapes of Four Histone Modifications during Deetiolation in Arabidopsis[W]

  2009influential reference
• Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

  2009cited by this paper
• The Chromodomain of LIKE HETEROCHROMATIN PROTEIN 1 Is Essential for H3K27me3 Binding and Function during Arabidopsis Development

  2009cited by this paper
• Chromatin indexing in Arabidopsis: an epigenomic tale of tails and more.

  2009cited by this paper
• Vernalization: winter and the timing of flowering in plants.

  2009cited by this paper
• Regulatory mechanism of histone epigenetic modifications in plants

  2009cited by this paper
• Repression of FLOWERING LOCUS C and FLOWERING LOCUS T by the Arabidopsis Polycomb Repressive Complex 2 Components

  2008cited by this paper
• Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana.

  2008cited by this paper
• Polycomb repression

  2008cited by this paper
• Histone H2B Monoubiquitination in the Chromatin of FLOWERING LOCUS C Regulates Flowering Time in Arabidopsis[W]

  2008cited by this paper
• Genic and Global Functions for Paf1C in Chromatin Modification and Gene Expression in Arabidopsis

  2008cited by this paper
• Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5.

  2008cited by this paper
• The CHD3 Remodeler PICKLE Promotes Trimethylation of Histone H3 Lysine 27*

  2008cited by this paper
• Repression of Flowering in Arabidopsis Requires Activation of FLOWERING LOCUS C Expression by the Histone Variant H2A.Z[W][OA]

  2007cited by this paper
• Transgene-induced silencing of Arabidopsis phytochrome A gene via exonic methylation.

  2007cited by this paper
• Arabidopsis TFL 2 / LHP 1 Specifically Associates with Genes Marked by Trimethylation of Histone H 3 Lysine 27

  2007cited by this paper
• The role of chromatin during transcription.

  2007cited by this paper
• Histone modifications and dynamic regulation of genome accessibility in plants.

  2007cited by this paper
• Chromatin modifications and their function.

  2007cited by this paper
• Light-regulated transcriptional networks in higher plants

  2007cited by this paper
• Analysis of Transcription Factor HY5 Genomic Binding Sites Revealed Its Hierarchical Role in Light Regulation of Development[W]

  2007influential reference
• Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27

  2007cited by this paper
• Cross-regulation of histone modifications

  2007cited by this paper
• AtMBD9: a protein with a methyl-CpG-binding domain regulates flowering time and shoot branching in Arabidopsis.

  2006cited by this paper
• RNAi, DRD1, and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in Arabidopsis

  2006cited by this paper
• Arabidopsis GCN5, HD1, and TAF1/HAF2 Interact to Regulate Histone Acetylation Required for Light-Responsive Gene Expression

  2006influential reference
• A bivalent chromatin structure marks key developmental genes in embryonic stem cells.

  2006cited by this paper
• Faculty Opinions recommendation of Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression.

  2006cited by this paper
• Profiling histone modification patterns in plants using genomic tiling microarrays

  2005cited by this paper
• Conservation and Divergence of Light-Regulated Genome Expression Patterns during Seedling Development in Rice and Arabidopsis[W]

  2005cited by this paper
• Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.

  2005cited by this paper
• Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36

  2005cited by this paper
• Arabidopsis HAF2 Gene Encoding TATA-binding Protein (TBP)-associated Factor TAF1, Is Required to Integrate Light Signals to Regulate Gene Expression and Growth*

  2005influential reference
• PAF1-complex-mediated histone methylation of FLOWERING LOCUS C chromatin is required for the vernalization-responsive, winter-annual habit in Arabidopsis.

  2004cited by this paper
• Photoreceptor ubiquitination by COP1 E3 ligase desensitizes phytochrome A signaling.

  2004cited by this paper
• Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3

  2004influential reference
• It's all in the balance

  2004cited by this paper
• Genetic and Functional Diversification of Small RNA Pathways in Plants

  2004cited by this paper
• Vernalization requires epigenetic silencing of FLC by histone methylation

  2004cited by this paper
• Regulation of Flowering Time by Histone Acetylation in Arabidopsis

  2003cited by this paper
• The Transcriptional Enhancer of the Pea Plastocyanin Gene Associates with the Nuclear Matrix and Regulates Gene Expression through Histone Acetylation Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.011825.

  2003cited by this paper
• Patterns of Expression and Normalized Levels of the Five Arabidopsis Phytochromes1

  2002cited by this paper
• The VERNALIZATION 2 gene mediates the epigenetic regulation of vernalization in Arabidopsis.

  2001cited by this paper
• Targeted Histone Acetylation and Altered Nuclease Accessibility over Short Regions of the Pea Plastocyanin Gene

  2001cited by this paper
• The language of covalent histone modifications

  2000cited by this paper
• Both phyA and phyB mediate light-imposed repression of PHYA gene expression in Arabidopsis.

  1999influential reference
• Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development.

  1993cited by this paper
• Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family.

  1989cited by this paper
• Genome-wide and Organ-specific Landscapes of Epigenetic Modifications and Their Relationships to Mrna and Small Rna Transcriptomes in Maize

  year unknowncited by this paper
• Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN 3

  year unknowncited by this paper
• Chromatin Modifications and Their Function

  year unknowncited by this paper

• Epigenetic modifications regulate peg elongation and underground fruiting in peanut in response to environmental cues.

  2026cites this paper
• Protein S-nitrosation: Roles in phytohormone signaling

  2026cites this paper
• Epigenetics in forest trees- key driver to phenotypic plasticity and adaptation under stress

  2025cites this paper
• Histone deacetylase complex 1 facilitates hypocotyl elongation by attenuating acetylation and transcription via a PIF4-dependent process.

  2025cites this paper
• Photosynthetic and plastid performance effects of photoreceptors

  2024cites this paper
• Regulation of seed germination: ROS, epigenetic, and hormonal aspects

  2024cites this paper
• Plant responses to abiotic stress regulated by histone acetylation

  2024cites this paper
• HISTONE DEACETYLASE19 Controls Ovule Number Determination and Transmitting Tract Differentiation

  2023cites this paper
• S-nitrosylation of the histone deacetylase HDA19 stimulates its activity to enhance plant stress tolerance in Arabidopsis.

  2023cites this paper
• Shade‐induced lncRNA PUAR promotes shade response by repressing PHYA expression

  2023cites this paper
• MYST family histone acetyltransferases regulate reproductive diapause initiation.

  2023cites this paper
• Organ-specific characteristics govern the relationship between histone code dynamics and transcriptional reprogramming during nitrogen response in tomato

  2023cites this paper
• Illuminating the Arabidopsis circadian epigenome: Dynamics of histone acetylation and deacetylation.

  2022cites this paper
• Light, chromatin, action: nuclear events regulating light signaling in Arabidopsis

  2022cites this paper
• The Importance of Networking: Plant Polycomb Repressive Complex 2 and Its Interactors

  2022cites this paper
• Perspectives for epigenetic editing in crops

  2021cites this paper
• VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms

  2021cites this paper
• Transcriptional Regulatory Network of the Light Signaling Pathways.

  2020cites this paper
• Histone deacetylase HDA19 interacts with histone methyltransferase SUVH5 to regulate seed dormancy in Arabidopsis.

  2020cites this paper
• The SNL-HDA19 histone deacetylase complex antagonizes HY5 activity to repress photomorphogenesis in Arabidopsis.

  2020cites this paper
• Light in the transcription landscape: chromatin, RNA polymerase II and splicing throughout Arabidopsis thaliana’s life cycle

  2020cites this paper
• Isolation of Lineage Specific Nuclei Based on Distinct Endoreduplication Levels and Tissue-Specific Markers to Study Chromatin Accessibility Landscapes

  2020cites this paper
• AtHDA15 attenuates COP1 via transcriptional quiescence, direct binding, and sub-compartmentalization during photomorphogenesis

  2020cites this paper
• The Arabidopsis Sin3-HDAC Complex Facilitates Temporal Histone Deacetylation at the CCA1 and PRR9 Loci for Robust Circadian Oscillation

  2019cites this paper
• A spatiotemporally regulated transcriptional complex underlies heteroblastic development of leaf hairs in Arabidopsis thaliana

  2019cites this paper
• Epigenetics of Light Signaling During Plant Development

  2019cites this paper
• HY5 Interacts with the Histone Deacetylase HDA15 to Repress Hypocotyl Cell Elongation in Photomorphogenesis1[OPEN]

  2019influential citation
• Epigenetic changes and photosynthetic plasticity in response to environment

  2019cites this paper
• Regulation of Phytohormone Biosynthesis Genes by Polycomb-Mediated Histone H3 Lysine 27 Trimethylation in Arabidopsis

  2018cites this paper
• New insights into the mechanisms of phytochrome-cryptochrome coaction.

  2018cites this paper
• Cytosolic acetyl-CoA promotes histone H3 lysine 27 acetylation in Arabidopsis

  2017cites this paper
• Metabolic Flux Redirection and Transcriptomic Reprogramming in the Albino Tea Cultivar ‘Yu-Jin-Xiang’ with an Emphasis on Catechin Production

  2017cites this paper
• Analysing the role of SAL1/PAP retrograde signalling within the circadian system of Arabidopsis thaliana

  2017cites this paper
• GENETIC AND EPIGENETIC REGULATION OF OVULE DEVELOPMENT AND PLANT REPRODUCTION IN A. THALIANA

  2017cites this paper
• Light behind the curtain: photoregulation of nuclear architecture and chromatin dynamics in plants

  2016cites this paper
• Regulation of transcription by the Arabidopsis UVR8 photoreceptor involves a specific histone modification

  2016cites this paper
• CURLY LEAF Regulates Gene Sets Coordinating Seed Size and Lipid Biosynthesis1[OPEN]

  2016cites this paper
• Histone Acetylation and Plant Development.

  2016cites this paper
• Epigenetic regulation of MdMYB1 is associated with paper bagging-induced red pigmentation of apples

  2016cites this paper
• CURLY LEAF Regulates Gene Sets Coordinating Seed Size and Lipid

  2016cites this paper
• Phytochrome signaling: time to tighten up the loose ends.

  2015cites this paper
• Cytomixis doesn’t induce obvious changes in chromatin modifications and programmed cell death in tobacco male meiocytes

  2015cites this paper
• Light‐dependent gene activation in Aspergillus nidulans is strictly dependent on phytochrome and involves the interplay of phytochrome and white collar‐regulated histone H3 acetylation

  2015cites this paper
• Genome-Wide Profiling of Histone Modifications (H3K9me2 and H4K12ac) and Gene Expression in Rust (Uromyces appendiculatus) Inoculated Common Bean (Phaseolus vulgaris L.)

  2015cites this paper
• MYBD employed by HY5 increases anthocyanin accumulation via repression of MYBL2 in Arabidopsis.

  2015cites this paper
• Salicylic acid biosynthesis is enhanced and contributes to increased biotrophic pathogen resistance in Arabidopsis hybrids

  2015cites this paper
• Regulation of transcription by Ultraviolet-B radiation in Arabidopsis thaliana

  2015influential citation
• Organizer-Derived WOX5 Signal Maintains Root Columella Stem Cells through Chromatin-Mediated Repression of CDF4 Expression.

  2015cites this paper
• Parallel action of AtDRB2 and RdDM in the control of transposable element expression

  2015cites this paper
• The WD40 Domain Protein MSI1 Functions in a Histone Deacetylase Complex to Fine-Tune Abscisic Acid Signaling

  2015cites this paper
• Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis

  2014cites this paper
• Transcript elongation factors: shaping transcriptomes after transcript initiation.

  2014cites this paper
• Mathematical modelling of photoperiodic external coincidence mechanisms in the model plant, Arabidopsis thaliana

  2014cites this paper
• Chromatin-Dependent Repression of the Arabidopsis Floral Integrator Genes Involves Plant Specific PHD-Containing Proteins[C][W]

  2014cites this paper
• The impact of chromatin dynamics on plant light responses and circadian clock function.

  2014cites this paper
• Gene expression regulation in photomorphogenesis from the perspective of the central dogma.

  2014cites this paper
• Light perception and signalling by phytochrome A.

  2014cites this paper
• Chromatin analysis of an Arabidopsis Phytochrome A allele reveals the correlation of transcriptional repression with recalcitrance to histone acetylation

  2014influential citation
• Se14, Encoding a JmjC Domain-Containing Protein, Plays Key Roles in Long-Day Suppression of Rice Flowering through the Demethylation of H3K4me3 of RFT1

  2014influential citation
• Distinct patterns of the histone marks associated with recruitment of the methionine chain-elongation pathway from leucine biosynthesis

  2014cites this paper
• Virulence Factors of Geminivirus Interact with MYC2 to Subvert Plant Resistance and Promote Vector Performance[C][W]

  2014cites this paper
• HISTONE DEACETYLASE19 Interacts with HSL1 and Participates in the Repression of Seed Maturation Genes in Arabidopsis Seedlings[C][W]

  2013cites this paper
• Epigenetic and small RNA regulation of senescence

  2013cites this paper
• Genome-wide analysis of histone modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica.

  2013cites this paper
• Chromatin reprogramming during the somatic-to-reproductive cell fate transition in plants

  2013cites this paper
• Arabidopsis Paired Amphipathic Helix Proteins SNL1 and SNL2 Redundantly Regulate Primary Seed Dormancy via Abscisic Acid–Ethylene Antagonism Mediated by Histone Deacetylation[W]

  2013cites this paper
• Arabidopsis Chromatin Remodeling Factor PICKLE Interacts with Transcription Factor HY5 to Regulate Hypocotyl Cell Elongation[C][W]

  2013cites this paper
• The role of epigenetics in hybrid vigour.

  2013cites this paper
• Pleiotropic phenotypes of the salt-tolerant and cytosine hypomethylated leafless inflorescence, evergreen dwarf and irregular leaf lamina mutants of Catharanthus roseus possessing Mendelian inheritance

  2013cites this paper
• Arabidopsis histone methyltransferase SET DOMAIN GROUP2 is required for regulation of various hormone responsive genes

  2013cites this paper
• Arabidopsis thaliana TERMINAL FLOWER2 is involved in light-controlled signalling during seedling photomorphogenesis.

  2012cites this paper
• Circadian clock regulates dynamic chromatin modifications associated with Arabidopsis CCA1/LHY and TOC1 transcriptional rhythms.

  2012cites this paper
• An epigenetic integrator: new insights into genome regulation, environmental stress responses and developmental controls by histone deacetylase 6.

  2012cites this paper
• Transition of chromatin status during the process of recovery from drought stress in Arabidopsis thaliana.

  2012cites this paper
• Environmentally coordinated epigenetic silencing of FLC by protein and long noncoding RNA components.

  2012cites this paper
• Histone H2B Monoubiquitination Facilitates the Rapid Modulation of Gene Expression during Arabidopsis Photomorphogenesis

  2012cites this paper
• Genomic basis for light control of plant development

  2012influential citation
• Running title: Chromatin dynamics during gene repression

  2012cites this paper
• Unraveling functions of the Arabidopsis histone deacetylase HDA6 in RNA-mediated silencing, DNA damage response and plant development

  2011cites this paper
• Invited Expert Review The Role of Phytochrome in Stress Tolerance

  2011cites this paper
• Phytochrome signaling mechanisms and the control of plant development.

  2011cites this paper
• The role of phytochrome in stress tolerance.

  2011cites this paper