Direct amplification of rhizobial nodC sequences from soil total DNA and comparison to nodC diversity of root nodule isolates.

No abstract is available for this paper.

• Publication year

  2005

• Venue

  FEMS Microbiology Ecology

• Publication date

  2005-09-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/J.FEMSEC.2005.02.015PMID 16329967
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments.

  2004cited by this paper
• Compatibility of Rhizobial Genotypes within Natural Populations of Rhizobium leguminosarum Biovar viciae for Nodulation of Host Legumes

  2003cited by this paper
• Diversity of Rhizobium-Phaseolus vulgaris symbiosis: overview and perspectives

  2003cited by this paper
• Nitrogenase gene diversity and microbial community structure: a cross-system comparison.

  2003cited by this paper
• Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment

  2002cited by this paper
• Different species and symbiotic genotypes of field rhizobia can nodulate Phaseolus vulgaris in Tunisian soils.

  2002cited by this paper
• Molecular Analysis of the Nitrate-Reducing Community from Unplanted and Maize-Planted Soils

  2002cited by this paper
• Biodiversity of Denitrifying and Dinitrogen-Fixing Bacteria in an Acid Forest Soil

  2002influential reference
• Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil.

  2001cited by this paper
• Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts.

  2001cited by this paper
• Direct amplification of nodD from community DNA reveals the genetic diversity of Rhizobium leguminosarum in soil.

  2001cited by this paper
• Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants.

  2000cited by this paper
• PCR Detection of Genes Encoding Nitrite Reductase in Denitrifying Bacteria

  1999cited by this paper
• Genotypic diversity of Sinorhizobium (formerly Rhizobium) meliloti strains isolated directly from a soil and from nodules of alfalfa (Medicago sativa) grown in the same soil

  1998cited by this paper
• Development of PCR Primer Systems for Amplification of Nitrite Reductase Genes (nirK and nirS) To Detect Denitrifying Bacteria in Environmental Samples

  1998cited by this paper
• Phaseolus vulgaris is a non‐selective host for nodulation

  1998cited by this paper
• Regulation of symbiotic root nodule development.

  1998cited by this paper
• Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity

  1998cited by this paper
• The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

  1997cited by this paper
• Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments

  1997cited by this paper
• Distribution of Symbiotic Genotypes in Rhizobium leguminosarum biovar viciae Populations Isolated Directly from Soils

  1996cited by this paper
• Four unnamed species of nonsymbiotic rhizobia isolated from the rhizosphere of Lotus corniculatus

  1996cited by this paper
• Population dynamics of indigenous and genetically modified rhizobia in the field

  1996cited by this paper
• Relative genetic structure of a population of Rhizobium meliloti isolated directly from soil and from nodules of alfalfa (Medicago sativa) and sweet clover (Melilotus alba)

  1995cited by this paper
• Phylogeny of Sym plasmids of rhizobia by PCR-based sequencing of a nodC segment

  1995cited by this paper
• Semiselective medium for isolation of Rhizobium leguminosarum from soils

  1995cited by this paper
• Phylogenetic identification and in situ detection of individual microbial cells without cultivation.

  1995cited by this paper
• Handbook for Rhizobia

  1994cited by this paper
• Estimating population size via sample coverage for closed capture-recapture models.

  1994cited by this paper
• Biological nitrogen fixation.

  1993cited by this paper
• Isolation from soil of symbiotic and nonsymbiotic Rhizobium leguminosarum by DNA hybridization

  1993cited by this paper
• Genetic structure of a soil population of nonsymbiotic Rhizobium leguminosarum

  1991cited by this paper
• Rhizobium tropici, a novel species nodulating Phaseolus vulgaris L. beans and Leucaena sp. trees.

  1991cited by this paper
• Isolation from soil of Rhizobium leguminosarum lacking symbiotic information

  1989cited by this paper
• Populations of Rhizobium leguminosarum biovars phaseoli and viceae in fields after bean or pea in rotation with nonlegumes

  1989cited by this paper
• Current Protocols in Molecular Biology (New York: Greene Publishing Associates and Wiley-Interscience). Host-Range Shuttle System for Gene Insertion into the Chromosomes of Gram-negative Bacteria.

  1988cited by this paper
• R factor transfer in Rhizobium leguminosarum.

  1974cited by this paper
• A manual for the practical study of root-nodule bacteria

  1971cited by this paper
• THE POPULATION FREQUENCIES OF SPECIES AND THE ESTIMATION OF POPULATION PARAMETERS

  1953cited by this paper

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