Supplementary Materials for Comparative Analysis Reveals Conserved Protein Phosphorylation Networks Implicated in Multiple Diseases

No abstract is available for this paper.

• Publication year

  2009

• Venue

  Unknown venue

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers

  No identifiers available.

• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Linear Motif Atlas for Phosphorylation-Dependent Signaling

  2008cited by this paper
• PhosphoPep—a database of protein phosphorylation sites in model organisms

  2008cited by this paper
• NetworKIN: a resource for exploring cellular phosphorylation networks

  2007cited by this paper
• Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry

  2007cited by this paper
• An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.

  2007cited by this paper
• PhosphoPep—a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

  2007cited by this paper
• Systematic discovery of in vivo phosphorylation networks.

  2007cited by this paper
• Reproducible isolation of distinct, overlapping segments of the phosphoproteome

  2007cited by this paper
• Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides.

  2005cited by this paper

• Unraveling the glyco-immunity nexus in pancreatic cancer

  2025cites this paper
• Computational investigation unveils pathogenic LIG3 non-synonymous mutations and therapeutic targets in acute myeloid leukemia

  2025cites this paper
• Genetic Code Expansion Approaches to Decipher the Ubiquitin Code

  2024cites this paper
• Heterologous Production of Antimicrobial Peptides: Notes to Consider

  2024cites this paper
• PTMoreR-enabled cross-species PTM mapping and comparative phosphoproteomics across mammals

  2024cites this paper
• PhosBoost: Improved phosphorylation prediction recall using gradient boosting and protein language models

  2023cites this paper
• Lactoferrin suppresses the progression of colon cancer under hyperglycemia by targeting WTAP/m6A/NT5DC3/HKDC1 axis

  2023cites this paper
• Bayesian analysis of dynamic phosphoproteomic data identifies protein kinases mediating GPCR responses

  2022cites this paper
• Evolutionary conservation of sequence motifs at sites of protein modification

  2022cites this paper
• Trans-omics analysis of insulin action reveals a cell growth subnetwork which co-regulates anabolic processes

  2022cites this paper
• A comprehensive review of global alignment of multiple biological networks: background, applications and open issues

  2022cites this paper
• Colorimetric and fluorometric dual-readout protein kinase assay by tuning the active surface of nanoceria.

  2021cites this paper
• Caspase-3, a shrimp phosphorylated hemocytic protein is necessary to control YHV infection.

  2021cites this paper
• A human kinase yeast array for the identification of kinases modulating phosphorylation‐dependent protein–protein interactions

  2021cites this paper
• Recent advances in genetic code expansion techniques for protein phosphorylation studies.

  2021cites this paper
• Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases

  2020cites this paper
• Using peptide arrays to profile phosphatase activity in cell lysates.

  2020cites this paper
• The evolution of protein kinase specificity

  2019cites this paper
• Other Emerging Development Trends

  2019cites this paper
• Applications of Computational Systems Biology in Cancer Signaling Pathways

  2019cites this paper
• Illuminating the dark phosphoproteome

  2019cites this paper
• Shared Regulatory Pathways Reveal Novel Genetic Correlations Between Grip Strength and Neuromuscular Disorders

  2019cites this paper
• In Vivo Phosphoproteome Analysis Reveals Kinome Reprogramming in Hepatocellular Carcinoma*

  2018cites this paper
• Homing in: Mechanisms of Substrate Targeting by Protein Kinases.

  2018cites this paper
• A Methodological Assessment and Characterization of Genetically-Driven Variation in Three Human Phosphoproteomes

  2018cites this paper
• Identification and characterization of invasion-related proteins of the malaria parasite Plasmodium falciparum (Welch, 1892)

  2018cites this paper
• Evolution, dynamics and dysregulation of kinase signalling.

  2018cites this paper
• A porous graphene sorbent coated with titanium(IV)-functionalized polydopamine for selective lab-in-syringe extraction of phosphoproteins and phosphopeptides

  2018cites this paper
• Expression and functional evaluation of biopharmaceuticals made in plant chloroplasts.

  2017cites this paper
• Defining Human Tyrosine Kinase Phosphorylation Networks Using Yeast as an In Vivo Model Substrate.

  2017cites this paper
• GSK3 and its interactions with the PI3K/AKT/mTOR signalling network.

  2017cites this paper
• Next generation of network medicine: interdisciplinary signaling approaches.

  2017cites this paper
• Kinase activity ranking using phosphoproteomics data (KARP) quantifies the contribution of protein kinases to the regulation of cell viability*

  2017cites this paper
• Classification and Lineage Tracing of SH2 Domains Throughout Eukaryotes.

  2017cites this paper
• Cross-Species PTM Mapping from Phosphoproteomic Data.

  2017cites this paper
• Bioinformatics Analysis of Functional Associations of PTMs.

  2017cites this paper
• Phosphosite-Specific Antibodies: A Brief Update on Generation and Applications.

  2017cites this paper
• Databases and Computational Tools for Evolutionary Analysis of Protein Phosphorylation.

  2017cites this paper
• Site-specific incorporation of phosphotyrosine using an expanded genetic code

  2017cites this paper
• Title Functional proteomics to dissect tyrosine kinase signallingpathways in cancer

  2017cites this paper
• Models of Models: A Translational Route for Cancer Treatment and Drug Development

  2017cites this paper
• Application of Proteomics to Cancer Therapy

  2016cites this paper
• KinView: a visual comparative sequence analysis tool for integrated kinome research.

  2016cites this paper
• Signaling proteins in the spotlight

  2016cites this paper
• Young phosphorylation is functionally silent

  2016cites this paper
• Prioritizing functional phosphorylation sites based on multiple feature integration

  2016cites this paper
• Understanding of ‘Networks’ In Vitro and/or In Vivo

  2016cites this paper
• The exploration of network motifs as potential drug targets from post-translational regulatory networks

  2016influential citation
• Unbiased identification of substrates of protein tyrosine phosphatase ptp‐3 in C. elegans

  2016cites this paper
• Elucidation of Signaling Pathways from Large-Scale Phosphoproteomic Data Using Protein Interaction Networks.

  2016cites this paper
• Reproducible Analysis of Post-Translational Modifications in Proteomes—Application to Human Mutations

  2015cites this paper
• A systematic approach to prioritize drug targets using machine learning, a molecular descriptor-based classification model, and high-throughput screening of plant derived molecules: a case study in oral cancer.

  2015cites this paper
• Extracting biomarkers of commitment to cancer development: potential role of vibrational spectroscopy in systems biology

  2015cites this paper
• PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications

  2015cites this paper
• Gene co-expression network and function modules in three types of glioma.

  2015cites this paper
• A NEW FRAMEWORK FOR QUANTITATIVE MASS SPECTROMETRY DATA ANALYSIS AND ITS APPLICATION TO DISCOVERY BASED PROTEOMICS IN C. ELEGANS

  2015cites this paper
• Informatics tools for the analysis and assignment of phosphorylation status in proteomics

  2015cites this paper
• Phospho-tyrosine dependent protein–protein interaction network

  2015cites this paper
• Recent findings and technological advances in phosphoproteomics for cells and tissues

  2015cites this paper
• Post-Translational Modifications Mapping Protein Networks Disease Proteomics

  2015influential citation
• In-Depth Analyses of B Cell Signaling Through Tandem Mass Spectrometry of Phosphopeptides Enriched by PolyMAC.

  2015cites this paper
• Profiling of Phosphatidylinositol 3-Kinase (PI3K) Proteins in Insulin Signaling Pathway

  2015cites this paper
• Prediction of Functionally Important Phospho-Regulatory Events in Xenopus laevis Oocytes

  2015cites this paper
• Evolutionary Constraint and Disease Associations of Post-Translational Modification Sites in Human Genomes

  2015cites this paper
• Robust production of recombinant phosphoproteins using cell-free protein synthesis

  2015cites this paper
• Global analysis of phosphorylation networks in humans.

  2014cites this paper
• SysPTM 2.0: an updated systematic resource for post-translational modification

  2014cites this paper
• Conservation and structural analysis of the Xenopus laevis phospho-proteome

  2014cites this paper
• The Development and Application of a Quantitative Peptide Microarray Based Approach to Protein Interaction Domain Specificity Space*

  2014cites this paper
• The growing landscape of lysine acetylation links metabolism and cell signalling

  2014cites this paper
• Turnover of protein phosphorylation evolving under stabilizing selection

  2014cites this paper
• PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins

  2014cites this paper
• ProKinO: A Unified Resource for Mining the Cancer Kinome

  2014cites this paper
• Functional Divergence and Evolutionary Turnover in Mammalian Phosphoproteomes

  2014cites this paper
• A Proteome-wide Domain-centric Perspective on Protein Phosphorylation

  2014cites this paper
• Elucidation of the evolutionary expansion of phosphorylation signaling networks using comparative phosphomotif analysis

  2014cites this paper
• Analytical challenges translating mass spectrometry‐based phosphoproteomics from discovery to clinical applications

  2014cites this paper
• Experimental and Computational Tools for Analysis of Signaling Networks in Primary Cells

  2014cites this paper
• Quantitative phosphoproteomic analysis reveals system-wide signaling pathways downstream of SDF-1/CXCR4 in breast cancer stem cells

  2014cites this paper
• Integrating phosphoproteomics in systems biology

  2014cites this paper
• Muscle‐specific calpain‐3 is phosphorylated in its unique insertion region for enrichment in a myofibril fraction

  2014cites this paper
• Correction for “ Quantitative phosphoproteomic analysis reveals system-wide signaling pathways downstream of SDF-1 / CXCR 4 in breast cancer stem cells

  2014cites this paper
• Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community

  2014cites this paper
• QUANTITATIVE CHARACTERIZATION OF PROTEINS AND POST-TRANSLATIONAL MODIFICATIONS IN COMPLEX PROTEOMES USING HIGH-RESOLUTION MASS SPECTROMETRY-BASED PROTEOMICS

  2014cites this paper
• Molecular Evolution of Posttranslational Regulation in Intrinsically Disordered Regions

  2014influential citation
• Exploiting holistic approaches to model specificity in protein phosphorylation

  2014cites this paper
• Database update SysPTM 2.0: an updated systematic resource for post-translational modification

  2014cites this paper
• Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers

  2013cites this paper
• Phosphorylation is required for myosin regulatory light chain (PmMRLC) to control yellow head virus infection in shrimp hemocytes.

  2013cites this paper
• Kinase-Substrate Enrichment Analysis Provides Insights into the Heterogeneity of Signaling Pathway Activation in Leukemia Cells

  2013cites this paper
• Completion of Proteomic Data Sets by Kd Measurement Using Cell-Free Synthesis of Site-Specifically Labeled Proteins

  2013cites this paper
• Use of comparative genomics approaches to characterize interspecies differences in response to environmental chemicals: challenges, opportunities, and research needs.

  2013cites this paper
• Evolution and functional cross‐talk of protein post‐translational modifications

  2013influential citation
• Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes

  2013cites this paper
• Wrangling Phosphoproteomic Data to Elucidate Cancer Signaling Pathways

  2013cites this paper
• Network approaches to drug discovery

  2013cites this paper
• Global analysis of protein expression and phosphorylation of three stages of Plasmodium falciparum intraerythrocytic development.

  2013cites this paper
• Examining factors that influence erroneous phosphorylation site localization via competing fragmentation and rearrangement reactions during ion trap CID‐MS/MS and ‐MS3

  2013cites this paper
• The evolution of the Mycobacterium tuberculosis proteome in response to the development of drug resistance

  2013cites this paper
• The Wntome: A genome-wide analysis of kinases and phosphatases that regulate Wnt signaling

  2013cites this paper