Novel strategies to minimize progeny inbreeding while maximizing genetic gain using genomic information.

No abstract is available for this paper.

• Publication year

  2012

• Venue

  Journal of Dairy Science

• Publication date

  Unknown publication date

• Fields of study

  Agricultural and Food Sciences, Medicine, Biology

• Identifiers
  DOI 10.3168/jds.2011-4254PMID 22192217
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• An algorithm for efficient constrained mate selection

  2011cited by this paper
• A comparison of dairy cattle breeding designs that use genomic selection.

  2011cited by this paper
• Efficient parentage assignment and pedigree reconstruction with dense single nucleotide polymorphism data.

  2011cited by this paper
• Imputation of Missing Genotypes From Sparse to High Density Using Long-Range Phasing

  2011cited by this paper
• Genomic Runs of Homozygosity Record Population History and Consanguinity

  2010cited by this paper
• Deterministic models of breeding scheme designs that incorporate genomic selection.

  2010cited by this paper
• Common SNPs explain a large proportion of the heritability for human height

  2010cited by this paper
• Maximising genetic gain whilst controlling rates of genomic inbreeding using genomicoptimum contribution selection

  2010cited by this paper
• A validated genome-wide association study in 2 dairy cattle breeds for milk production and fertility traits using variable length haplotypes.

  2010cited by this paper
• Updated index weights for the Australian profit ranking in dairy cattle.

  2009cited by this paper
• Development and Characterization of a High Density SNP Genotyping Assay for Cattle

  2009cited by this paper
• A novel predictor of multilocus haplotype homozygosity: comparison with existing predictors.

  2009cited by this paper
• Increased accuracy of artificial selection by using the realized relationship matrix.

  2009cited by this paper
• Efficient methods to compute genomic predictions.

  2008cited by this paper
• A practical approach for minimising inbreeding and maximising genetic gain in dairy cattle

  2007cited by this paper
• Inbreeding in genome-wide selection.

  2007cited by this paper
• Strategy for applying genome-wide selection in dairy cattle.

  2006cited by this paper
• A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase.

  2006cited by this paper
• Novel multilocus measure of linkage disequilibrium to estimate past effective population size.

  2003cited by this paper
• Prediction of total genetic value using genome-wide dense marker maps.

  2001cited by this paper
• The effects of inbreeding on the lifetime performance of dairy cattle.

  1998cited by this paper
• Maximizing the response of selection with a predefined rate of inbreeding.

  1997cited by this paper
• Increasing long-term response to selection

  1994cited by this paper

• Reproduction and Genetic Improvement in Dairy Cattle: Sustaining a Critical Link in the Era of Opportunities

  2026cites this paper
• Probabilities of two alleles being identity by state at unobserved loci predicted by observed loci in cattle populations

  2026cites this paper
• Weight Gain and Tenderness in Nelore Cattle: Genetic Association and a Potential Pleiotropic Role of Transcription Factors and Genes

  2025cites this paper
• Genomic inbreeding evaluation and its effects on phenotype and selection accuracy of resistance to Edwardsiella tarda in Turbot (Scophthalmus maximus)

  2025cites this paper
• Optimization of mating strategy with genomic information for genetic advantage and defect based on linear programming in Huaxi cattle

  2025cites this paper
• Genomic Prediction of Individual Inbreeding Levels for the Management of Genetic Diversity in Populations With Small Effective Size

  2025cites this paper
• Simulation of long-term impact of dairy cattle mating programmes using genomic information at the herd level.

  2025cites this paper
• Genome scan for runs of homozygosity in Saanen goats selected under tropical environments reveals candidate genes for adaptive and production traits

  2025cites this paper
• Enhancing the genomic prediction accuracy of swine agricultural economic traits using an expanded one-hot encoding in CNN models1

  2024cites this paper
• Optimal Combination of Different Selection and Mating Strategies on Exploiting Genetic Diversity and Genetic Gain in Small Pig Conservation Populations

  2024cites this paper
• Effect of germplasm exchange strategies on genetic gain, homozygosity, and genetic diversity in dairy stud populations: A simulation study.

  2024cites this paper
• Genetic Gain and Inbreeding in Different Simulated Genomic Selection Schemes for Grain Yield and Oil Content in Safflower

  2024cites this paper
• Evaluation of breeding strategies to reduce the inbreeding rate in the Friesian horse population: Looking back and moving forward.

  2024cites this paper
• Optimal Mating of Pinus taeda L. Under Different Scenarios Using Differential Evolution Algorithm

  2024cites this paper
• Variation in the proportion of the segregating genome shared between full-sibling cattle and sheep

  2023cites this paper
• Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategies

  2023cites this paper
• Evaluation of Linear Programming and Optimal Contribution Selection Approaches for Long-Term Selection on Beef Cattle Breeding

  2023cites this paper
• Genomic inbreeding coefficients using imputed genotypes: assessing differences among SNP panels in Holstein-Friesian dairy cows

  2023cites this paper
• Mating allocations in Holstein combining genomic information and linear programming optimization at the herd level.

  2023cites this paper
• Genomic Prediction of Complex Traits in Perennial Plants: A Case for Forest Trees.

  2022cites this paper
• Genomic mate-allocation strategies exploiting additive and non-additive genetic effects to maximise total clonal performance in sugarcane

  2022cites this paper
• Genomic prediction ability and genetic parameters for residual feed intake calculated using different approaches and their associations with growth, reproductive, and carcass traits in Nellore cattle

  2022cites this paper
• Progress in Genomic Mating in Domestic Animals

  2022influential citation
• Optimal mating of Pinus taeda L. under different scenarios using differential evolution algorithm

  2022cites this paper
• Removal to undesirable MC1R gene alleles from ‘Berrenda en Negro’, an endangered Spanish cattle breed, to enhance breed conservation programs

  2022cites this paper
• Genome-enabled classification of stayability in Nellore cattle under a machine learning framework

  2022cites this paper
• Strategies to assure optimal trade-offs among competing objectives for genetic improvement of soybean

  2021cites this paper
• Mating allocations in Nordic Red Dairy Cattle using genomic information.

  2021influential citation
• Strategies of preserving genetic diversity while maximizing genetic response from implementing genomic selection in pulse breeding programs

  2021cites this paper
• Strategies to Assure Optimal Trade-Offs Among Competing Objectives for the Genetic Improvement of Soybean

  2021cites this paper
• How to achieve a higher selection plateau in forest tree breeding? Fostering heterozygote × homozygote relationships in optimal contribution selection in the case study of Populus nigra

  2021cites this paper
• Invited review: The future of selection decisions and breeding programs: What are we breeding for, and who decides?

  2021cites this paper
• Assessment of parametric and non-parametric methods for prediction of quantitative traits with non-additive genetic architecture

  2020cites this paper
• Polygenic basis for adaptive morphological variation in a 1 threatened

  2020cites this paper
• Designing and implementing a genetic improvement program in commercial beekeeping operations

  2020cites this paper
• Symposium review: Exploiting homozygosity in the era of genomics-Selection, inbreeding, and mating programs.

  2020cites this paper
• Improved dairy cattle mating plans at herd level using genomic information.

  2020cites this paper
• GENOMIC ANALYSIS OF INBREEDING DEPRESSION ON FERTILITY TRAITS IN FINNISH AYRSHIRE CATTLE

  2020cites this paper
• Quantitative and genomic analyses of inbreeding in dairy cattle populations

  2020influential citation
• Simulation-based optimization of genomic selection scheme for accelerating genetic gain while preventing inbreeding depression in onion breeding

  2020cites this paper
• Evaluation of runs of homozygosity and genomic inbreeding in Holstein cattle from Colombia

  2020cites this paper
• An evaluation of inbreeding measures using a whole-genome sequenced cattle pedigree

  2020influential citation
• Effect of recent and ancient inbreeding on production and fertility traits in Canadian Holsteins

  2020cites this paper
• ACCEPTED AUTHOR VERSION OF THE MANUSCRIPT: Assessment of parametric and non-parametric methods for prediction of quantitative traits with non-additive genetic architecture DOI: 10.2478/aoas-2020-0087

  2020influential citation
• Polygenic basis for adaptive morphological variation in a threatened Aotearoa | New Zealand bird, the hihi (Notiomystis cincta)

  2020cites this paper
• Short communication: Animal-level factors associated with whether a dairy female is mated to a dairy or beef bull.

  2020cites this paper
• Inbreeding and Genetic Gain in the Presence of Random Mating and Mate Allocation Using Genomic-Pedigree Relationships in Chickens: A Simulation Study

  2020cites this paper
• Novel approach to incorporate information about recessive lethal genes increases the accuracy of genomic prediction for mortality traits

  2020cites this paper
• Management of lethal recessive alleles in beef cattle through the use of mate selection software

  2019cites this paper
• Comparison of gene editing versus conventional breeding to introgress the POLLED allele into the US dairy cattle population.

  2019cites this paper
• A mating advice system in dairy cattle incorporating genomic information.

  2019cites this paper
• Fourth cycle breeding and testing strategy for Pinus taeda in the NC State University Cooperative Tree Improvement Program

  2019cites this paper
• SNP-based mate allocation strategies to maximize total genetic value in pigs

  2019cites this paper
• Improving Short- and Long-Term Genetic Gain by Accounting for Within-Family Variance in Optimal Cross-Selection

  2019cites this paper
• Bull efficiency using dairy genetic traits

  2019cites this paper
• Boosting Genetic Gain in Allogamous Crops via Speed Breeding and Genomic Selection

  2019cites this paper
• Comparison of long-term genomic response under restricted inbreeding in conventional and modern molecular breeding schemes: review article.

  2019cites this paper
• Conservation genomic management of two critically endangered New Zealand birds.

  2019cites this paper
• Simulation of introgression of the POLLED allele into the Jersey breed via conventional breeding vs. gene editing1

  2018cites this paper
• Multi-objective optimized genomic breeding strategies for sustainable food improvement

  2018cites this paper
• Harnessing genomic information for livestock improvement

  2018cites this paper
• Invited review: Learning from the future-A vision for dairy farms and cows in 2067.

  2018cites this paper
• Phenotypic and genetic characterization of South African Boran cattle

  2018cites this paper
• Simulation of Introgression of the Polled Allele into the Holstein Breed via Conventional Breeding versus Gene Editing

  2018cites this paper
• Trait-specific long-term consequences of genomic selection in beef cattle

  2017cites this paper
• An investigation into the usefulness of the British Equestrian Federation Futurity programme

  2017cites this paper
• Genomics for veterinarians

  2017cites this paper
• Genômica aplicada à puberdade de bovinos (Bos indicus)

  2017cites this paper
• Management of Mendelian Traits in Breeding Programs by Gene Editing: A Simulation Study

  2017cites this paper
• STPGA: Selection of training populations with a genetic algorithm

  2017cites this paper
• Multi-objective optimized breeding strategies

  2017cites this paper
• Symposium review: Possibilities in an age of genomics: The future of selection indices.

  2017cites this paper
• Chapter 7. Dog breeds: towards genomic management of populations with a high incidence of genetic defects

  2017cites this paper
• Mitigation of inbreeding while preserving genetic gain in genomic breeding programs for outbred plants

  2017cites this paper
• Selection of training populations (and other subset selection problems) with an accelerated genetic algorithm (STPGA: An R-package for selection of training populations with a genetic algorithm)

  2017cites this paper
• Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample

  2017cites this paper
• Invited review: Inbreeding in the genomics era: Inbreeding, inbreeding depression, and management of genomic variability.

  2017cites this paper
• Including nonadditive genetic effects in mating programs to maximize dairy farm profitability.

  2017influential citation
• Genomic-Based Optimum Contribution in Conservation and Genetic Improvement Programs with Antagonistic Fitness and Productivity Traits

  2016cites this paper
• Use of SNP genotypes to identify carriers of harmful recessive mutations in cattle populations

  2016cites this paper
• Analysis of Genotyping-by-Sequencing data in a maize (Zea mays L.) breeding program

  2016cites this paper
• Accuracy of genomic selection for age at puberty in a multi-breed population of tropically adapted beef cattle.

  2016cites this paper
• Sanchez-Molano, E., Pong-Wong, R. and Banos, G. (2016) Genomic-based optimum contribution in conservation and genetic improvement programs with antagonistic fitness and productivity

  2016cites this paper
• Efficient Breeding by Genomic Mating

  2016cites this paper
• The use of genomic information can enhance the efficiency of conservation programs

  2016cites this paper
• The use of coancestry based on shared segments for maintaining genetic diversity.

  2016cites this paper
• Scotland's Rural College Genomic-based optimum contribution in conservation and genetic improvement programs with antagonistic fitness and productivity traits Sanchez-Molano,

  2016cites this paper
• Building strong relationships between conservation genetics and primary industry leads to mutually beneficial genomic advances

  2016cites this paper
• Breeding Focus 2016 – Improving Welfare

  2016cites this paper
• Characterization and management of long runs of homozygosity in parental nucleus lines and their associated crossbred progeny

  2016influential citation
• Genomic applications in horse breeding

  2016cites this paper
• Genomic selection in multi-breed dairy cattle populations

  2016cites this paper
• Analysis of runs of homozygosity and their relationship with inbreeding in five cattle breeds farmed in Italy.

  2015cites this paper
• Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle

  2015cites this paper
• Breeding the dairy cow of the future: what do we need?

  2015cites this paper
• A simple strategy for managing many recessive disorders in a dairy cattle breeding program

  2015influential citation
• Control of inbreeding in dairy cattle in the genomic era

  2015influential citation
• Sustainable dairy cattle selection in the genomic era.

  2015cites this paper
• Genome-Wide Estimates of Coancestry, Inbreeding and Effective Population Size in the Spanish Holstein Population

  2015cites this paper
• Genome Sequence and Key Determinants of Genomic Applications in Horses

  2015cites this paper