A quantitative approach to the study of cell shapes and interactions during early chordate embryogenesis.

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Current Biology

• Publication date

  2006-02-21

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1016/J.CUB.2005.12.044PMID 16488868
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• EMAP and EMAGE

  2007cited by this paper
• Diagnosis of lung nodule using semivariogram and geometric measures in computerized tomography images

  2005cited by this paper
• Gastrulation movements: the logic and the nuts and bolts.

  2005cited by this paper
• Compartmentalized morphogenesis in epithelia: From cell to tissue shape

  2005cited by this paper
• A procedure to determine the correct thickness of an object with confocal microscopy in case of refractive index mismatch

  2005cited by this paper
• Assembly of polymorphic genomes: algorithms and application to Ciona savignyi.

  2005cited by this paper
• Gene regulatory networks for development.

  2005cited by this paper
• Snakes: Active contour models

  2004cited by this paper
• Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks

  2004cited by this paper
• EMAP and EMAGE - A framework for understanding spatially organized data

  2003cited by this paper
• A conserved role for the MEK signalling pathway in neural tissue specification and posteriorisation in the invertebrate chordate, the ascidian Ciona intestinalis

  2003influential reference
• Neural tissue in ascidian embryos is induced by FGF9/16/20, acting via a combination of maternal GATA and Ets transcription factors.

  2003cited by this paper
• A Genomic Regulatory Network for Development

  2002cited by this paper
• 3D-DIASemb: a computer-assisted system for reconstructing and motion analyzing in 4D every cell and nucleus in a developing embryo.

  2002influential reference
• The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

  2002cited by this paper
• Targeting of rough endoplasmic reticulum membrane proteins and ribosomes in invertebrate neurons.

  2002cited by this paper
• Ciona intestinalis cDNA projects: expressed sequence tag analyses and gene expression profiles during embryogenesis.

  2002cited by this paper
• Patterning the marginal zone of early ascidian embryos: localized maternal mRNA and inductive interactions.

  2002cited by this paper
• The simple tail of chordates: Phylogenetic significance of appendicularians

  2001cited by this paper
• Induction of anterior neural fates in the ascidian Ciona intestinalis.

  2001influential reference
• The BMP/CHORDIN antagonism controls sensory pigment cell specification and differentiation in the ascidian embryo.

  2001cited by this paper
• Current methods in medical image segmentation.

  2000cited by this paper
• Centrosome‐attracting body: A novel structure closely related to unequal cleavages in the ascidian embryo

  1998cited by this paper
• The quickhull algorithm for convex hulls

  1996cited by this paper
• Current biology.

  1991cited by this paper
• Image processing

  1971cited by this paper
• The Organization and Cell-lineage of the Ascidian Egg

  1906cited by this paper

• Marine Model Organisms for Mechanobiology Studies.

  2026cites this paper
• Collective effects of cell cleavage dynamics

  2024cites this paper
• Spectral decomposition unlocks ascidian morphogenesis

  2024cites this paper
• Temporal variability and cell mechanics control robustness in mammalian embryogenesis

  2023cites this paper
• A digital twin reproducing gene regulatory network dynamics of early Ciona embryos indicates robust buffers in the network

  2023cites this paper
• From Cell States to Cell Fates: How Cell Proliferation and Neuronal Differentiation Are Coordinated During Embryonic Development

  2022cites this paper
• Quantitative Dissection of the Proximal Ciona brachyury Enhancer

  2022cites this paper
• Developmental Biology of the Sea Urchin and Other Marine Invertebrates: Methods and Protocols

  2021cites this paper
• Neighbor-specific gene expression revealed from physically interacting cells during mouse embryonic development

  2021cites this paper
• Cell geometry, signal dampening, and a bimodal transcriptional response underlie the spatial precision of an ERK-mediated embryonic induction.

  2021cites this paper
• Brain Sensory Organs of the Ascidian Ciona robusta: Structure, Function and Developmental Mechanisms

  2021cites this paper
• Cell division geometries as central organizers of early embryo development.

  2021cites this paper
• The gene regulatory system for specifying germ layers in early embryos of the simple chordate

  2021cites this paper
• The complete cell lineage and MAPK- and Otx-dependent specification of the dopaminergic cells in the Ciona brain.

  2021cites this paper
• Combined effect of cell geometry and polarity domains determines the orientation of unequal division

  2021cites this paper
• CeLaVi: an interactive cell lineage visualization tool

  2021cites this paper
• Gene Editing in the Ascidian Phallusia mammillata and Tail Nerve Cord Formation.

  2021cites this paper
• Different strategies for tissue scaling in dwarf tailbud embryos revealed by single-cell analysis.

  2020cites this paper
• Tunicate gastrulation.

  2020cites this paper
• Three-Dimensional Analysis of Fragmentation Process of Al3Ti Platelet Particles in Al–Al3Ti Multiphase Alloy Deformed by Asymmetric Rolling

  2020cites this paper
• A gene regulatory network for cell fate specification in Ciona embryos.

  2020cites this paper
• Ciona Brachyury proximal and distal enhancers have different FGF dose-response relationships

  2020cites this paper
• The genetic program to specify ectodermal cells in ascidian embryos

  2020cites this paper
• Single-cell morphometrics reveals ancestral principles of notochord development

  2020cites this paper
• Apical Relaxation during Mitotic Rounding Promotes Tension-Oriented Cell Division.

  2020cites this paper
• Contact area–dependent cell communication and the morphological invariance of ascidian embryogenesis

  2020cites this paper
• Practical Considerations in Particle and Object Tracking and Analysis

  2019cites this paper
• Antero-posterior ectoderm patterning by canonical Wnt signaling during ascidian development

  2019cites this paper
• Emergence of Embryo Shape During Cleavage Divisions.

  2019cites this paper
• MorphoNet: an interactive online morphological browser to explore complex multi-scale data

  2019cites this paper
• Initiation of the zygotic genetic program in the ascidian embryo.

  2018cites this paper
• Title Genetic pathways for differentiation of the peripheral nervoussystem in ascidians

  2018cites this paper
• Outstanding questions in developmental ERK signaling

  2018cites this paper
• Quantitative analysis of cell shape and the cytoskeleton in developmental biology

  2018cites this paper
• Dynamic interplay of cell fate, polarity and force generation in ascidian embryos.

  2018cites this paper
• Asymmetric and Unequal Cell Divisions in Ascidian Embryos.

  2017cites this paper
• Correction: Microtubule-induced nuclear envelope fluctuations control chromatin dynamics in Drosophila embryos

  2017cites this paper
• Contact-dependent cell-cell communications drive morphological invariance during ascidian embryogenesis

  2017cites this paper
• Contact-dependent cell communications drive morphological invariance during ascidian embryogenesis

  2017cites this paper
• How complexity increases in development: An analysis of the spatial-temporal dynamics of Gene expression in Ciona intestinalis.

  2017cites this paper
• Emerging mechanisms regulating mitotic synchrony during animal embryogenesis

  2017cites this paper
• The invariant cleavage pattern displayed by ascidian embryos depends on spindle positioning along the cell's longest axis in the apical plane and relies on asynchronous cell divisions

  2017influential citation
• An Effective Feedback Loop between Cell-Cell Contact Duration and Morphogen Signaling Determines Cell Fate.

  2017cites this paper
• Science Journals — AAAS

  2016cites this paper
• CellECT: cell evolution capturing tool

  2016influential citation
• Three Dimensional Visualisation of Microscope Imaging to Improve Understanding of Human Embryo Development

  2016cites this paper
• The central nervous system of ascidian larvae

  2016cites this paper
• Outils d'analyse d'images et recalage d'individus pour l'étude de la morphogenèse animale et végétale

  2016cites this paper
• Analysis of 3 D and 4 D Images of Organisms in Embryogenesis

  2015cites this paper
• Gene regulatory systems that control gene expression in the Ciona embryo

  2015cites this paper
• Tunicates: exploring the sea shores and roaming the open ocean. A tribute to Thomas Huxley

  2015cites this paper
• Quantitative and in toto imaging in ascidians: Working toward an image‐centric systems biology of chordate morphogenesis

  2015cites this paper
• Bioadhesion in ascidians: a developmental and functional genomics perspective

  2015cites this paper
• ANISEED 2015: a digital framework for the comparative developmental biology of ascidians

  2015cites this paper
• Genetic pathways for differentiation of the peripheral nervous system in ascidians

  2015cites this paper
• A Boolean Function for Neural Induction Reveals a Critical Role of Direct Intercellular Interactions in Patterning the Ectoderm of the Ascidian Embryo

  2015influential citation
• Computational methods for analysis of dynamic events in cell migration.

  2014cites this paper
• Microinjection and 4D fluorescence imaging in the eggs and embryos of the ascidian Phallusia mammillata.

  2014cites this paper
• An Otx/Nodal Regulatory Signature for Posterior Neural Development in Ascidians

  2014cites this paper
• Régulation de la voie MEK/ERK par la signalisation éphrine lors du développement neural chez l'ascidie Ciona intestinalis

  2014influential citation
• Limited predictive value of blastomere angle of division in trophectoderm and inner cell mass specification

  2014cites this paper
• Transcriptome dynamics in early embryos of the ascidian, Ciona intestinalis.

  2013cites this paper
• Images Creating 3D Digital Replicas of Ascidian Embryos from Stacks of Confocal

  2013cites this paper
• Ascidians as Excellent Models for Studying Cellular Events in the Chordate Body Plan

  2013cites this paper
• Building quantitative, three‐dimensional atlases of gene expression and morphology at cellular resolution

  2013cites this paper
• Making Blueprint of Chordate Body: Dynamic Activities of Regulatory Genes

  2013cites this paper
• Whole-organ cell shape analysis reveals the developmental basis of ascidian notochord taper.

  2013cites this paper
• Towards 3D in silico modeling of the sea urchin embryonic development

  2013cites this paper
• Multiple Signaling Pathways Coordinate to Induce a Threshold Response in a Chordate Embryo

  2013influential citation
• Functional Morphometric Analysis in Cellular Behaviors: Shape and Size Matter

  2013cites this paper
• Differential gene expression in notochord and nerve cord fate segregation in the Ciona intestinalis embryo

  2013cites this paper
• 3D-Printed Microwell Arrays for Ciona Microinjection and Timelapse Imaging

  2013cites this paper
• Practical tips for imaging ascidian embryos

  2013cites this paper
• Evolutionary crossroads in developmental biology

  2012cites this paper
• Volume conservation principle involved in cell lengthening and nucleus movement during tissue morphogenesis

  2012cites this paper
• Three-dimensional anatomy of the Ciona intestinalis tailbud embryo at single-cell resolution.

  2012cites this paper
• Cell-cycle control in oocytes and during early embryonic cleavage cycles in ascidians.

  2012cites this paper
• Histone arginine methylation regulates cell fate and pluripotency in the early mouse embryo

  2012cites this paper
• Development and evolution of the ascidian cardiogenic mesoderm.

  2012cites this paper
• ODEL D ATA TO S EMANTICS My

  2012cites this paper
• Use of Concave Corners in the Segmentation of Embryological Datasets

  2012cites this paper
• Genome Structure, Functional Genomics, and Proteomics in Ascidians

  2012cites this paper
• Evolutionary crossroads in developmental biology: the tunicates

  2011cites this paper
• Visually Relating Gene Expression and in vivo DNA Binding Data

  2011cites this paper
• Creating 3D digital replicas of ascidian embryos from stacks of confocal images.

  2011influential citation
• When needles look like hay: how to find tissue-specific enhancers in model organism genomes.

  2011cites this paper
• Reconstructing embryonic development

  2011cites this paper
• Time-lapse imaging of live Phallusia embryos for creating 3D digital replicas.

  2011cites this paper
• FROM 3D MODEL DATA TO SEMANTICS

  2011cites this paper
• Model-Based Cell Tracking and Analysis in Fluorescence Microscopy

  2011cites this paper
• Toward high‐content/high‐throughput imaging and analysis of embryonic morphogenesis

  2011cites this paper
• Segmentation of 3D cell membrane images by PDE methods and its applications

  2011cites this paper
• FGF/MAPK/Ets signaling renders pigment cell precursors competent to respond to Wnt signal by directly controlling Ci-Tcf transcription

  2011cites this paper
• Patterns of cell lineage, movement, and migration from germ layer specification to gastrulation in the amphipod crustacean Parhyale hawaiensis.

  2011cites this paper
• Microtubule-induced nuclear envelope fluctuations control chromatin dynamics in Drosophila embryos

  2011cites this paper
• Embryological methods in ascidians: the Villefranche-sur-Mer protocols.

  2011cites this paper
• Cell cycle in ascidian eggs and embryos.

  2011cites this paper
• 4D Embryogenesis image analysis using PDE methods of image processing

  2010cites this paper
• BMP signaling coordinates gene expression and cell migration during precardiac mesoderm development.

  2010cites this paper
• A cis-Regulatory Signature for Chordate Anterior Neuroectodermal Genes

  2010cites this paper