Resolving colocalization of bacteria and metal(loid)s on plant root surfaces by combining fluorescence in situ hybridization (FISH) with multiple-energy micro-focused X-ray fluorescence (ME μXRF).

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Journal of Microbiological Methods

• Publication date

  2016-12-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/j.mimet.2016.09.018PMID 27693754PMCID PMC5127750
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Binding of heavy metal ions in aggregates of microbial cells, EPS and biogenic iron minerals measured in-situ using metal- and glycoconjugates-specific fluorophores

  2016influential reference
• Phytostabilization of mine tailings using compost-assisted direct planting: Translating greenhouse results to the field.

  2016cited by this paper
• Toxic metal(loid) speciation during weathering of iron sulfide mine tailings under semi-arid climate

  2015influential reference
• Environmental factors influencing the structural dynamics of soil microbial communities during assisted phytostabilization of acid-generating mine tailings: a mesocosm experiment.

  2014influential reference
• Surficial weathering of iron sulfide mine tailings under semi-arid climate.

  2014influential reference
• Arsenic Speciation in Solids Using X-ray Absorption Spectroscopy

  2014cited by this paper
• Effect of silicic acid on arsenate and arsenite retention mechanisms on 6-L ferrihydrite: A spectroscopic and batch adsorption approach.

  2013influential reference
• Mapping of Heavy Metal Ion Sorption to Cell-Extracellular Polymeric Substance-Mineral Aggregates by Using Metal-Selective Fluorescent Probes and Confocal Laser Scanning Microscopy

  2013influential reference
• Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

  2012cited by this paper
• Effect of tailings on wetland vegetation in Rautuvaara, a former iron–copper mining area in northern Finland

  2012cited by this paper
• Natural zinc enrichment in peatlands: Biogeochemistry of ZnS formation

  2012influential reference
• Bergey's Manual Of Systematic Bacteriology. Vol. 5 The Actinobacteria

  2012influential reference
• Bacteriogenic Fe(III) (oxyhydr)oxides characterized by synchrotron microprobe coupled with spatially resolved phylogenetic analysis.

  2012cited by this paper
• NIH Image to ImageJ: 25 years of image analysis

  2012influential reference
• Microscale imaging and identification of Fe speciation and distribution during fluid-mineral reactions under highly reducing conditions.

  2011cited by this paper
• Spatial distribution of arsenic and heavy metals in willow roots from a contaminated floodplain soil measured by X-ray fluorescence spectroscopy.

  2011cited by this paper
• Defining the distribution of arsenic species and plant nutrients in rice (Oryza sativa L.) from the root to the grain

  2011cited by this paper
• Advanced imaging techniques for assessment of structure, composition and function in biofilm systems.

  2010cited by this paper
• Speciation and natural attenuation of arsenic and iron in a tidally influenced shallow aquifer

  2009cited by this paper
• PyNAST: a flexible tool for aligning sequences to a template alignment

  2009influential reference
• Effects of Compost on Colonization of Roots of Plants Grown in Metalliferous Mine Tailings, as Examined by Fluorescence In Situ Hybridization

  2008influential reference
• ATR-FTIR study of lipopolysaccharides at mineral surfaces.

  2008cited by this paper
• Biogeochemistry of metalliferous peats: sulfur speciation and depth distributions of dsrAB genes and Cd, Fe, Mn, S, and Zn in soil cores.

  2007influential reference
• Phytostabilization of Mine Tailings in Arid and Semiarid Environments—An Emerging Remediation Technology

  2007cited by this paper
• Localizing the biochemical transformations of arsenate in a hyperaccumulating fern.

  2006cited by this paper
• Speciation and quantitative mapping of metal species in microbial biofilms using scanning transmission X-ray microscopy.

  2006cited by this paper
• ATR-FTIR spectroscopy reveals bond formation during bacterial adhesion to iron oxide.

  2006cited by this paper
• probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007

  2006influential reference
• A guided tour into subcellular colocalization analysis in light microscopy

  2006influential reference
• Numbers and locations of native bacteria on field-grown wheat roots quantified by fluorescence in situ hybridization (FISH).

  2006cited by this paper
• Laser Sources for Confocal Microscopy

  2006cited by this paper
• Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

  2006cited by this paper
• Bergey's Manual® of Systematic Bacteriology Volume Two: The Proteobacteria (Part C)

  2005cited by this paper
• Plant root excretions in relation to the rhizosphere effect

  2005cited by this paper
• Plant root excretions in relation to the rhizosphere effect

  2005cited by this paper
• The influence of sulfur and iron on dissolved arsenic concentrations in the shallow subsurface under changing redox conditions.

  2004cited by this paper
• Fluorescence in situ hybridization for the detection of prokaryotes

  2004cited by this paper
• Arsenic sequestration by ferric iron plaque on cattail roots.

  2004cited by this paper
• Principles of crystal nucleation and growth

  2003cited by this paper
• Scanning Transmission X-Ray, Laser Scanning, and Transmission Electron Microscopy Mapping of the Exopolymeric Matrix of Microbial Biofilms

  2003cited by this paper
• Labeling fluorescence in situ hybridization probes for genomic targets.

  2002cited by this paper
• Arsenic (III) oxidizing Microbacterium lacticum and its use in the treatment of arsenic contaminated groundwater

  2002cited by this paper
• Fluorescence In Situ Hybridization and Catalyzed Reporter Deposition for the Identification of Marine Bacteria

  2002cited by this paper
• Characterization of Fe plaque and associated metals on the roots of mine-waste impacted aquatic plants.

  2001influential reference
• Aggregation-based crystal growth and microstructure development in natural iron oxyhydroxide biomineralization products.

  2000influential reference
• Iron-Oxidizing Bacteria Are Associated with Ferric Hydroxide Precipitates (Fe-Plaque) on the Roots of Wetland Plants

  1999influential reference
• The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set.

  1999cited by this paper
• A pyramid approach to subpixel registration based on intensity

  1998influential reference
• In situ probing of gram-positive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides.

  1995cited by this paper
• In situ probing of gram-positive bacteria with high DNA G + C content using 23S rRNA-targeted oligonucleotides.

  1994cited by this paper
• Acidiphilium multivorum sp. nov., an acidophilic chemoorganotrophic bacterium from pyritic acid mine drainage

  1994cited by this paper
• Mapping of selenium concentrations in soil aggregates with synchrotron X-ray fluorescence microprobe

  1994cited by this paper
• Microscopic observations of the iron plaque of a submerged aquatic plant (Vallisneria americana Michx)

  1993cited by this paper
• Measurement of co‐localization of objects in dual‐colour confocal images

  1993influential reference
• Phylogenetic Oligodeoxynucleotide Probes for the Major Subclasses of Proteobacteria: Problems and Solutions

  1992cited by this paper
• Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations

  1990cited by this paper
• Handbook of Biological Confocal Microscopy

  1990cited by this paper
• Trace element determinations with synchrotron-induced x-ray emission

  1989cited by this paper
• Bergey’s Manual of Systematic Bacteriology Volume 2

  1987cited by this paper
• Effect of coumarin on growth and metabolism of Pythium

  1977cited by this paper
• Root excretions in relation to the rhizosphere effect

  1959cited by this paper
• Geology of the Iron King Mine, Yavapai County, Arizona

  1952influential reference

• Recruitment of neutrophils in glomeruli in early mouse sepsis is associated with E-selectin expression and activation of endothelial NF-κB and MAPK pathways.

  2024cites this paper
• 16S Metagenomics Of Branch-Leaf Compost At The Expo Memorial Park Osaka

  2023cites this paper
• On Synchrotron Radiation for Studying the Transformation of Toxic Elements in the Soil–Plant System: A Review

  2021cites this paper
• Surface functionalization-dependent localization and affinity of SiO2 nanoparticles within the biofilm EPS matrix

  2020cites this paper
• Heavy metal behaviour at mineral-organo interfaces: Mechanisms, modelling and influence factors.

  2019cites this paper
• Effect of Re-acidification on Buffalo Grass Rhizosphere and Bulk Microbial Communities During Phytostabilization of Metalliferous Mine Tailings

  2019cites this paper
• Could the rhizoplane biofilm of wetland plants lead to rhizospheric heavy metal precipitation and iron-sulfur cycle termination?

  2019cites this paper
• Oxidative Weathering Decreases Bioaccessibility of Toxic Metal(loid)s in PM10 Emissions From Sulfide Mine Tailings

  2018cites this paper
• Trapping of lead (Pb) by corn and pea root border cells

  2018cites this paper
• Bacterial Rhizoplane Colonization Patterns of Buchloe dactyloides Growing in Metalliferous Mine Tailings Reflect Plant Status and Biogeochemical Conditions

  2017influential citation