Genome of Methylobacillus flagellatus, Molecular Basis for Obligate Methylotrophy, and Polyphyletic Origin of Methylotrophy

No abstract is available for this paper.

• Publication year

  2007

• Venue

  Journal of Bacteriology

• Publication date

  2007-04-06

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1128/JB.00045-07PMID 17416667PMCID PMC1913398
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Methane emissions from terrestrial plants under aerobic conditions

  2006cited by this paper
• Complete Genome Sequence of the Marine, Chemolithoautotrophic, Ammonia-Oxidizing Bacterium Nitrosococcus oceani ATCC 19707

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• The Repetitive DNA Elements Called CRISPRs and Their Associated Genes: Evidence of Horizontal Transfer Among Prokaryotes

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• Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the Betaproteobacteria.

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• Chromosome Evolution in the Thermotogales: Large-Scale Inversions and Strain Diversification of CRISPR Sequences

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• Faculty Opinions recommendation of A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action.

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• Whole-Genome Analysis of the Methyl tert-Butyl Ether-Degrading Beta-Proteobacterium Methylibium petroleiphilum PM1

  2006cited by this paper
• Methyloversatilis universalis gen. nov., sp. nov., a novel taxon within the Betaproteobacteria represented by three methylotrophic isolates.

  2006cited by this paper
• CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.

  2005cited by this paper
• Oxaloacetate decarboxylase of Vibrio cholerae: purification, characterization, and expression of the genes in Escherichia coli

  2005cited by this paper
• Bacterial Populations Active in Metabolism of C1 Compounds in the Sediment of Lake Washington, a Freshwater Lake

  2005cited by this paper
• CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies.

  2005cited by this paper
• A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes

  2005cited by this paper
• Biogeochemical ocean-atmosphere transfers in the Arabian Sea

  2005cited by this paper
• Biofilms: the matrix revisited.

  2005cited by this paper
• Analysis of Gene Islands Involved in Methanopterin-Linked C1 Transfer Reactions Reveals New Functions and Provides Evolutionary Insights

  2005cited by this paper
• A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ, extroverts and introverts

  2005cited by this paper
• Growth Substrate- and Phase-Specific Expression of Biphenyl, Benzoate, and C1 Metabolic Pathways in Burkholderia xenovorans LB400

  2005cited by this paper
• A challenge for 21st century molecular biology and biochemistry: what are the causes of obligate autotrophy and methanotrophy?

  2004cited by this paper
• The gene encoding the ribulose monophosphate pathway enzyme, 3-hexulose-6-phosphate synthase, from Aminomonas aminovorus C2A1 is adjacent to coding sequences that exhibit similarity to histidine biosynthesis enzymes.

  2004cited by this paper
• Genomic Insights into Methanotrophy: The Complete Genome Sequence of Methylococcus capsulatus (Bath)

  2004influential reference
• Chemolithoorganotrophic Growth of Nitrosomonas europaea on Fructose

  2003influential reference
• Methylotrophy in Methylobacterium extorquens AM1 from a Genomic Point of View

  2003influential reference
• Genes involved in the synthesis of the exopolysaccharide methanolan by the obligate methylotroph Methylobacillus sp strain 12S.

  2003influential reference
• The Production of Methanol by Flowering Plants and the Global Cycle of Methanol

  2002cited by this paper
• Use of Methylotrophic Bacteria Methylobacillus flagellatumKT for Isolation of Deuterated Exogenous Carbohydrates

  2002cited by this paper
• Effect of growth conditions on the synthesis of terminal oxidases in Methylobacillus flagellatus KT.

  2002cited by this paper
• Stoichiometric model for evaluating the metabolic capabilities of the facultative methylotroph Methylobacterium extorquens AM1, with application to reconstruction of C(3) and C(4) metabolism.

  2002cited by this paper
• The contribution of reactive carbon emissions from vegetation to the carbon balance of terrestrial ecosystems.

  2002cited by this paper
• Two-Component System That Regulates Methanol and Formaldehyde Oxidation in Paracoccus denitrificans

  2001cited by this paper
• Methylobacillus flagellatus KT contains a novel cbo‐type cytochrome oxidase

  2001cited by this paper
• Methylotrophic MethylobacteriumBacteria Nodulate and Fix Nitrogen in Symbiosis with Legumes

  2001cited by this paper
• Another Unusual Type of Citric Acid Cycle Enzyme inHelicobacter pylori: the Malate:Quinone Oxidoreductase

  2000cited by this paper
• Novel Formaldehyde-Activating Enzyme inMethylobacterium extorquens AM1 Required for Growth on Methanol

  2000cited by this paper
• Analysis of two formaldehyde oxidation pathways in Methylobacillus flagellatus KT, a ribulose monophosphate cycle methylotroph.

  2000influential reference
• Saccharide production from methanol by transposon 5 mutants derived from the extracellular polysaccharide-producing bacterium Methylobacillus sp. strain 12S

  2000cited by this paper
• [Use of the recombinant bacterial strain to control blood-sucking mosquito larvae].

  1999cited by this paper
• [Use of the recombinant bacterial strain to control blood-sucking mosquito larvae].

  1999cited by this paper
• C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic Archaea.

  1998cited by this paper
• Molecular and mutational analysis of a DNA region separating two methylotrophy gene clusters in Methylobacterium extorquens AM1.

  1997cited by this paper
• Expression of the mau gene cluster of Paracoccus denitrificans is controlled by MauR and a second transcription regulator.

  1997cited by this paper
• Organization of methylamine utilization genes (mau) in 'Methylobacillus flagellatum ' KT and analysis of mau mutants.

  1997cited by this paper
• Genetics of C1 metabolism regulation in Paracoccus denitrificans

  1996cited by this paper
• Microbial Growth on C1 Compounds

  1996cited by this paper
• Identification and characterization of the pqqDGC gene cluster involved in pyrroloquinoline quinone production in an obligate methylotroph Methylobacillus flagellatum.

  1996cited by this paper
• Methanotrophic bacteria.

  1996cited by this paper
• Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.

  1995cited by this paper
• Cloning, sequencing, and mutation of a gene for azurin in Methylobacillus flagellatum KT

  1995cited by this paper
• Effect of formaldehyde on growth of obligate methylotroph Methylobacillus flagellatum in a substrate non-limited continuous culture

  1992cited by this paper
• Growth of the obligate methylotroph Methylobacillus flagellatum under stationary and nonstationary conditions during continuous cultivation.

  1992cited by this paper
• Oxidative and assimilative enzyme activities in continuous cultures of the obligate methylotrophMethylobacillus flagellatum

  1991cited by this paper
• Isolation and characterization of the moxJ, moxG, moxI, and moxR genes of Paracoccus denitrificans: inactivation of moxJ, moxG, and moxR and the resultant effect on methylotrophic growth

  1991cited by this paper
• The Regulation of Exopolysaccharide Production and of Enzymes Involved in C1 Assimilation in Methylophilus methylotrophus

  1989cited by this paper
• [Expression of the human interferon alpha F gene in the obligate methylotroph Methylobacillus flagellatum KT and Pseudomonas putida].

  1987cited by this paper
• Expression of the human interferon alpha F gene in the obligate methylotroph Methylobacillus flagellatum KT and Pseudomonas putida

  1987cited by this paper
• The Biochemistry of Methylotrophs

  1982cited by this paper
• The Metabolism of Pyruvate by the Facultative Methylotroph Pseudomonas AM1

  1980cited by this paper
• Methanol Assimilation by Hyphomicrobium sp.

  1973cited by this paper

• Advances in synthetic biology for engineering methylotrophic microbial cell factories

  2026cites this paper
• Awakening of the RuMP cycle for partial methylotrophy in the thermophile Parageobacillus thermoglucosidasius

  2025cites this paper
• Liquid Addition Techniques to Enhance Methane Biotrickling Filters at Dairy Barn Concentrations

  2025cites this paper
• Selective increase of antibiotic-resistant denitrifiers drives N2O production in ciprofloxacin-contaminated soils.

  2024cites this paper
• Emerging role of rare earth elements in biomolecular functions

  2024cites this paper
• A citric acid cycle-deficient Escherichia coli as an efficient chassis for aerobic fermentations

  2024cites this paper
• Structural-level insights into the functional proteins MMO and MDH from methanotrophic bacteria for their reaction mechanism

  2024cites this paper
• Bioseparation of rare earth elements and high value-added biomaterials applications.

  2023cites this paper
• Metabolic handoffs between multiple symbionts may benefit the deep-sea bathymodioline mussels

  2023cites this paper
• Enrichment of mixed methanotrophic cultures producing polyhydroxyalkanoates (PHAs) from various environmental sources.

  2023cites this paper
• Metabolic engineering strategies for microbial utilization of methanol

  2023cites this paper
• Lanpepsy is a novel lanthanide-binding protein involved in the lanthanide response of the obligate methylotroph Methylobacillus flagellatus

  2023cites this paper
• Generation of an Escherichia coli strain growing on methanol via the ribulose monophosphate cycle

  2022cites this paper
• Unravelling Formaldehyde Metabolism in Bacteria: Road towards Synthetic Methylotrophy

  2022cites this paper
• A Black Raspberry-Rich Diet Protects From Dextran Sulfate Sodium-Induced Intestinal Inflammation and Host Metabolic Perturbation in Association With Increased Aryl Hydrocarbon Receptor Ligands in the Gut Microbiota of Mice

  2022cites this paper
• Enzyme engineering and in vivo testing of a formate reduction pathway

  2021cites this paper
• Unraveling the bacterial diversity of Cangar Hot Spring, Indonesia by Next Generation Sequencing of 16S rRNA gene

  2021cites this paper
• Rewiring the native methanol assimilation metabolism by incorporating the heterologous ribulose monophosphate cycle into Methylorubrum extorquens.

  2021cites this paper
• Comparative Genomics Revealing Insights into Niche Separation of the Genus Methylophilus

  2021cites this paper
• Mass spectrometry-based approaches to study lanthanides and lanthanide-dependent proteins in the phyllosphere.

  2021cites this paper
• Effect of mixed microbial culture addition on enhanced river water quality: Pollutant removal and microbial community characteristics

  2020cites this paper
• One‐carbon metabolism, folate, zinc and translation

  2020cites this paper
• Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae

  2019cites this paper
• Evolution in action: Habitat-transition leads to genome-streamlining in Methylophilaceae (Betaproteobacteriales)

  2019cites this paper
• Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes

  2019cites this paper
• New insights into the cultivation of N, N-dimethylformamide-degrading methanogenic consortium: A long-term investigation on the variation of prokaryotic community inoculated with activated sludge.

  2019cites this paper
• Improving synthetic methylotrophy via dynamic formaldehyde regulation of pentose phosphate pathway genes and redox perturbation.

  2019cites this paper
• Lanthanide-Dependent Methanol Dehydrogenases of XoxF4 and XoxF5 Clades Are Differentially Distributed Among Methylotrophic Bacteria and They Reveal Different Biochemical Properties

  2018cites this paper
• Genomic characterization of methylotrophy of Oharaeibacter diazotrophicus strain SM30T.

  2018cites this paper
• Identification of Bisphenol A-Assimilating Microorganisms in Mixed Microbial Communities Using 13C-DNA Stable Isotope Probing.

  2018cites this paper
• Methanol-essential growth of Escherichia coli

  2018cites this paper
• Differential incorporation of one-carbon substrates among microbial populations identified by stable isotope probing from the estuary to South China Sea

  2018cites this paper
• Syntrophic Growth of Geobacter sulfurreducens Accelerates Anaerobic Denitrification

  2018cites this paper
• Aerobic granular sludge for bisphenol A (BPA) removal from wastewater

  2017cites this paper
• Characteristics of Naturally Grown Biofilms in Deep Groundwaters and Their Heavy Metal Sorption Property in a Deep Subsurface Environment

  2017influential citation
• Characterisation of methylotrophs in the rhizosphere

  2017influential citation
• Molecular detection of Methylotrophs from an Indian landfill site and their potential for biofuel production

  2017influential citation
• Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms

  2017cites this paper
• Biochemical and molecular characterization of the isocitrate dehydrogenase with dual coenzyme specificity from the obligate methylotroph Methylobacillus Flagellatus

  2017cites this paper
• Peculiar citric acid cycle of hydrothermal vent chemolithoautotroph Hydrogenovibrio crunogenus, and insights into carbon metabolism by obligate autotrophs

  2017cites this paper
• Scale-Up Aspects of PHA Production by Microbial Enrichment Cultures

  2017influential citation
• Revealing the bacterial profile of an anoxic-aerobic moving-bed biofilm reactor system treating a chemical industry wastewater

  2017cites this paper
• Microbial Genomics and Bioremediation of Industrial Wastewater

  2016cites this paper
• Pyrroloquinoline Quinone Ethanol Dehydrogenase in Methylobacterium extorquens AM1 Extends Lanthanide-Dependent Metabolism to Multicarbon Substrates

  2016cites this paper
• Identification of bacterial communities in sediments of Poyang Lake, the largest freshwater lake in China

  2016cites this paper
• A distinct holoenzyme organization for two-subunit pyruvate carboxylase

  2016cites this paper
• Quantitative Transcriptomics Reveals the Growth- and Nutrient-Dependent Response of a Streamlined Marine Methylotroph to Methanol and Naturally Occurring Dissolved Organic Matter

  2016cites this paper
• Synthetic methylotrophy: engineering the production of biofuels and chemicals based on the biology of aerobic methanol utilization.

  2015cites this paper
• Complete genome sequence of Methylophilus sp. TWE2 isolated from methane oxidation enrichment culture of tap-water.

  2015cites this paper
• Combining metagenomics with metaproteomics and stable isotope probing reveals metabolic pathways used by a naturally occurring marine methylotroph.

  2015cites this paper
• The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign

  2015cites this paper
• Effect of hydraulic retention time on performance of an anoxic–aerobic sequencing batch reactor treating saline wastewater

  2015cites this paper
• Nutrients and trace organic contaminants removal by an anoxic-aerobic membrane bioreactor (mbr): lab-, pilot- and full-scale investigations

  2015cites this paper
• Metal enzymes in "impossible" microorganisms catalyzing the anaerobic oxidation of ammonium and methane.

  2015cites this paper
• Genetic determinants of heat resistance in Escherichia coli

  2015cites this paper
• XoxF encoding an alternative methanol dehydrogenase is widespread in coastal marine environments.

  2015cites this paper
• Engineering Escherichia coli for methanol conversion.

  2015influential citation
• Core pathways operating during methylotrophy of Bacillus methanolicus MGA3 and induction of a bacillithiol‐dependent detoxification pathway upon formaldehyde stress

  2015cites this paper
• PQQ-dependent methanol dehydrogenases: rare-earth elements make a difference

  2014cites this paper
• The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes

  2014cites this paper
• XoxF-Type Methanol Dehydrogenase from the Anaerobic Methanotroph “Candidatus Methylomirabilis oxyfera”

  2014cites this paper
• Genome Information of Methylobacterium oryzae, a Plant-Probiotic Methylotroph in the Phyllosphere

  2014cites this paper
• Impact of non-storing biomass on PHA production: an enrichment culture on acetate and methanol.

  2014cites this paper
• Improved group-specific primers based on the full SILVA 16S rRNA gene reference database.

  2014cites this paper
• Assessing the influence of CH4 concentration during culture enrichment on the biodegradation kinetics and population structure.

  2014cites this paper
• Methanotrophy in Movile Cave

  2014cites this paper
• The Family Methylophilaceae

  2014cites this paper
• Physiology and Evolution of Methylamine Metabolism across Methylobacterium extorquens strains

  2014cites this paper
• Technologies and Framework for Resource Recovery and Beneficiation from Human Waste

  2014cites this paper
• A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae

  2013cites this paper
• Evolution and assembly of the ribosome

  2013cites this paper
• 7 Aerobic Methylotrophic Prokaryotes

  2013cites this paper
• Bifunctional sucrose phosphate synthase/phosphatase is involved in the sucrose biosynthesis by Methylobacillus flagellatus KT.

  2013cites this paper
• The Distribution and Evolution of C1 Transfer Enzymes and Evolution of the Planctomycetes

  2013cites this paper
• Molecular Characterization of Bacterial Phylogenetic and Functional Groups at Terrebonne Bay along the Coastline of the Gulf of Mexico

  2013cites this paper
• A novel family of bacterial dioxygenases that catalyse the hydroxylation of free L-amino acids.

  2012cites this paper
• Purification and characterization of azurin from the methylamine-utilizing obligate methylotroph Methylobacillus flagellatus KT.

  2012cites this paper
• Structure prediction and analysis of MxaF from obligate, facultative and restricted facultative methylobacterium

  2012cites this paper
• Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera.

  2012cites this paper
• Phytosymbiosis of aerobic methylobacteria: New facts and views

  2011cites this paper
• Methylotrophy in a Lake: from Metagenomics to Single-Organism Physiology

  2011cites this paper
• Modularity of methylotrophy, revisited.

  2011cites this paper
• Application of the bacteriophage Mu-driven system for the integration/amplification of target genes in the chromosomes of engineered Gram-negative bacteria—mini review

  2011cites this paper
• Towards “Focused” Metagenomics:A Case Study Combining DNA Stable-Isotope Probing, Multiple Displacement Amplification, and Metagenomics

  2011cites this paper
• Elucidation of the metabolic network topology in Methylobacterium extorquens AM1 and its operation under pure and mixed substrate conditions

  2011influential citation
• Facultativemethanotrophy: false leads, true results, and suggestions for future research

  2011cites this paper
• Facultative methanotrophy: false leads, true results, and suggestions for future research.

  2011cites this paper
• Genomes of Three Methylotrophs from a Single Niche Reveal the Genetic and Metabolic Divergence of the Methylophilaceae

  2011cites this paper
• An Integrated Proteomics/Transcriptomics Approach Points to Oxygen as the Main Electron Sink for Methanol Metabolism in Methylotenera mobilis

  2011cites this paper
• High‐Resolution Metagenomics: Assessing Specific Functional Types in Complex Microbial Communities

  2011cites this paper
• β-Glucan Transferases of Family GH17 from Proteobacteria

  2010influential citation
• Genetics of the glutamate‐mediated methylamine utilization pathway in the facultative methylotrophic beta‐proteobacterium Methyloversatilis universalis FAM5

  2010cites this paper
• Functioning in situ: gene expression in Methylotenera mobilis in its native environment as assessed through transcriptomics

  2010cites this paper
• The expressed genome of Methylobacillus flagellatus as 1 defined through comprehensive proteomics and new 2 insights into methylotrophy 3 4

  2010cites this paper
• Phylogenetic diversity of gene sequences isolated from the rumen as analysed using a self‐organizing map (SOM)

  2010cites this paper
• Expressed Genome of Methylobacillus flagellatus as Defined through Comprehensive Proteomics and New Insights into Methylotrophy

  2010cites this paper
• A Systems Biology Approach Uncovers Cellular Strategies Used by Methylobacterium extorquens AM1 During the Switch from Multi- to Single-Carbon Growth

  2010cites this paper
• Insights into the physiology of Methylotenera mobilis as revealed by metagenome-based shotgun proteomic analysis.

  2009cites this paper
• Genesis, effects and fates of repeats in prokaryotic genomes.

  2009cites this paper
• Methanol-based industrial biotechnology: current status and future perspectives of methylotrophic bacteria.

  2009cites this paper