Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Journal of Proteomics

• Publication date

  2017-08-23

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1016/j.jprot.2017.06.004PMID 28627464
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis

  2017cited by this paper
• Unravelling plant molecular machineries through affinity purification coupled to mass spectrometry.

  2015cited by this paper
• Accurate label-free protein quantitation with high- and low-resolution mass spectrometers.

  2014cited by this paper
• SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome

  2014cited by this paper
• A Proteomic Strategy for Global Analysis of Plant Protein Complexes[W][OPEN]

  2014influential reference
• A proteome-scale map of the human interactome network.

  2014cited by this paper
• Improved Intensity-Based Label-Free Quantification via Proximity-Based Intensity Normalization (PIN)

  2014cited by this paper
• Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ *

  2014cited by this paper
• Characterization of Native Protein Complexes and Protein Isoform Variation Using Size-fractionation-based Quantitative Proteomics*

  2013cited by this paper
• Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

  2013cited by this paper
• Microtubule nucleation and establishment of the mitotic spindle in vascular plant cells.

  2013cited by this paper
• Identification of Myosin XI Receptors in Arabidopsis Defines a Distinct Class of Transport Vesicles[W][OPEN]

  2013cited by this paper
• Affinity‐purification coupled to mass spectrometry: Basic principles and strategies

  2012cited by this paper
• Oligomeric structure of 14‐3‐3 protein: What do we know about monomers?

  2012cited by this paper
• A census of human soluble protein complexes.

  2012cited by this paper
• A high-throughput approach for measuring temporal changes in the interactome

  2012cited by this paper
• Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry.

  2012cited by this paper
• SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis

  2012cited by this paper
• The SLEEPER genes: a transposase-derived angiosperm-specific gene family

  2012cited by this paper
• Next-generation proteomics: towards an integrative view of proteome dynamics

  2012cited by this paper
• The capture of phosphoproteins by 14-3-3 proteins mediates actions of insulin.

  2011cited by this paper
• Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism.

  2011cited by this paper
• The cytosolic glutamine synthetase GLN1;2 plays a role in the control of plant growth and ammonium homeostasis in Arabidopsis rosettes when nitrate supply is not limiting.

  2011cited by this paper
• Andromeda: a peptide search engine integrated into the MaxQuant environment.

  2011influential reference
• Less label, more free: Approaches in label‐free quantitative mass spectrometry

  2011cited by this paper
• Membrane protein complexes catalyze both 4- and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis

  2011cited by this paper
• A nodulin/glutamine synthetase-like fusion protein is implicated in the regulation of root morphogenesis and in signalling triggered by flagellin

  2011cited by this paper
• Integrative Identification of Arabidopsis Mitochondrial Proteome and Its Function Exploitation through Protein Interaction Network

  2011cited by this paper
• Megadalton Complexes in the Chloroplast Stroma of Arabidopsis thaliana Characterized by Size Exclusion Chromatography, Mass Spectrometry, and Hierarchical Clustering*

  2010cited by this paper
• Quantitation in mass-spectrometry-based proteomics.

  2010cited by this paper
• The moonlighting function of pyruvate carboxylase resides in the non-catalytic end of the TIM barrel.

  2010cited by this paper
• Recognition and processing of ubiquitin-protein conjugates by the proteasome.

  2009cited by this paper
• MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays.

  2009cited by this paper
• A comparison of labeling and label-free mass spectrometry-based proteomics approaches.

  2009cited by this paper
• Minimal membrane docking requirements revealed by reconstitution of Rab GTPase-dependent membrane fusion from purified components

  2009cited by this paper
• Nitrilase enzymes and their role in plant–microbe interactions

  2009cited by this paper
• Challenges and Rewards of Interaction Proteomics *

  2009cited by this paper
• Reconstitution of Rab- and SNARE-dependent membrane fusion by synthetic endosomes

  2009cited by this paper
• Toward chromatographic analysis of interacting protein networks.

  2008influential reference
• A "tagless" strategy for identification of stable protein complexes genome-wide by multidimensional orthogonal chromatographic separation and iTRAQ reagent tracking.

  2008cited by this paper
• Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics

  2008cited by this paper
• MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

  2008cited by this paper
• DAnTE: a statistical tool for quantitative analysis of -omics data

  2008cited by this paper
• Quantitative mass spectrometry in proteomics: a critical review

  2007cited by this paper
• Proteome Analysis of Arabidopsis Leaf Peroxisomes Reveals Novel Targeting Peptides, Metabolic Pathways, and Defense Mechanisms[W]

  2007cited by this paper
• Two independent routes of de novo vitamin B6 biosynthesis: not that different after all.

  2007cited by this paper
• Locating proteins in the cell using TargetP, SignalP and related tools

  2007cited by this paper
• Functional Analysis of PDX2 from Arabidopsis, a Glutaminase Involved in Vitamin B6 Biosynthesis1[W][OA]

  2007cited by this paper
• Functional Analysis of PDX 2 from Arabidopsis , a Glutaminase Involved in Vitamin B 6 Biosynthesis 1 [ W ] [ OA ]

  2007cited by this paper
• Locating proteins in the cell using TargetP, SignalP and related tools

  2007cited by this paper
• Proteomic complex detection using sedimentation.

  2007cited by this paper
• Dynamic control of signaling by modular adaptor proteins.

  2007cited by this paper
• A mammalian organelle map by protein correlation profiling.

  2006cited by this paper
• Proteome survey reveals modularity of the yeast cell machinery

  2006cited by this paper
• Analysis of the Arabidopsis rsr4-1/pdx1-3 Mutant Reveals the Critical Function of the PDX1 Protein Family in Metabolism, Development, and Vitamin B6 Biosynthesis[W]

  2006cited by this paper
• Two Cytosolic Glutamine Synthetase Isoforms of Maize Are Specifically Involved in the Control of Grain Production[W][OA]

  2006cited by this paper
• The Oligomeric Stromal Proteome of Arabidopsis thaliana Chloroplasts *S

  2006cited by this paper
• Structure of a bacterial pyridoxal 5′-phosphate synthase complex

  2006cited by this paper
• Mapping the Arabidopsis organelle proteome.

  2006cited by this paper
• Protein complexes regulating Arp2/3-mediated actin assembly.

  2006cited by this paper
• The three-dimensional structure of an eukaryotic glutamine synthetase: functional implications of its oligomeric structure.

  2006cited by this paper
• A dehydrin gene in Physcomitrella patens is required for salt and osmotic stress tolerance.

  2006cited by this paper
• Vitamin B6 biosynthesis in higher plants.

  2005cited by this paper
• Imaging plant cell death: GFP-Nit1 aggregation marks an early step of wound and herbicide induced cell death

  2005cited by this paper
• An Arabidopsis hAT-like transposase is essential for plant development

  2005cited by this paper
• Retrotranslocation of the Chaperone Calreticulin from the Endoplasmic Reticulum Lumen to the Cytosol

  2005cited by this paper
• An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation.

  2005cited by this paper
• Interpretation of Shotgun Proteomic Data

  2005cited by this paper
• The power of two: protein dimerization in biology.

  2004cited by this paper
• Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants.

  2004cited by this paper
• Mechanisms of protein import and routing in chloroplasts.

  2004cited by this paper
• Protein import into chloroplasts

  2004cited by this paper
• Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction.

  2004cited by this paper
• Shared components of protein complexes--versatile building blocks or biochemical artefacts?

  2004cited by this paper
• Metabolic channeling in plants.

  2004cited by this paper
• A pathway for association of receptors, adaptors, and actin during endocytic internalization.

  2003cited by this paper
• A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data

  2003cited by this paper
• Cytoscape: a software environment for integrated models of biomolecular interaction networks.

  2003cited by this paper
• A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome.

  2003cited by this paper
• Higher plant myosin XI moves processively on actin with 35 nm steps at high velocity

  2003cited by this paper
• A quantitative method for assessing co-localization in immunolabeled thin section electron micrographs.

  2003cited by this paper
• Functional organization of the yeast proteome by systematic analysis of protein complexes

  2002cited by this paper
• Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry.

  2002cited by this paper
• Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry

  2002influential reference
• Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography-tandem mass spectrometry.

  2002cited by this paper
• The Mitotic Spindle: A Self-Made Machine

  2001cited by this paper
• 14-3-3 proteins: structure, function, and regulation.

  2000cited by this paper
• Macromolecular interactions: tracing the roots.

  2000cited by this paper
• Plant 14-3-3s: Omnipotent Metabolic Phosphopartners?

  2000cited by this paper
• A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae

  2000cited by this paper
• Macromolecular interactions: tracing the roots.

  2000cited by this paper
• Protein import into chloroplasts.

  1999cited by this paper
• A generic protein purification method for protein complex characterization and proteome exploration

  1999influential reference
• The cell as a collection of protein machines: preparing the next generation of molecular biologists.

  1998cited by this paper
• Principles governing amino acid composition of integral membrane proteins: application to topology prediction.

  1998cited by this paper
• The Cell as a Collection Overview of Protein Machines: Preparing the Next Generation of Molecular Biologists

  1998cited by this paper
• Molecular organization and tissue-specific expression of an Arabidopsis 14-3-3 gene.

  1996cited by this paper
• Structure and organization of two closely related low-temperature-induced dhn/lea/rab-like genes in Arabidopsis thaliana L. Heynh

  1995cited by this paper
• COPII: a membrane coat formed by Sec proteins that drive vesicle budding from the endoplasmic reticulum.

  1994cited by this paper
• Complexes of sequential metabolic enzymes.

  1987cited by this paper

• Integrating CORUM and co-fractionation mass spectrometry to create enhanced benchmarks for protein complex predictions

  2025cites this paper
• Identification of dehydrin protein complexes in vivo reveals functional interactions of LEA5 with OSCA3, PIP2B and PLDα1 in plant water-deficit stress

  2025cites this paper
• Rapid ethylene-triggered protein complex remodeling in dark-grown Arabidopsis hypocotyls.

  2025cites this paper
• The plant proteome delivers from discovery to innovation.

  2025cites this paper
• Revealing the dynamics of fungal disease with proteomics.

  2025cites this paper
• The compound NMA regulates root and hypocotyl development in Arabidopsis thaliana via crosstalk between the auxin and ethylene signalling pathways

  2024cites this paper
• The conditional mitochondrial protein complexome in the Arabidopsis thaliana root and shoot

  2023influential citation
• Methods to Analyze the Redox Reactivity of Plant Proteins.

  2022cites this paper
• Identification and Mapping of QTLs for Sulfur-Containing Amino Acids in Soybean (Glycine max L.).

  2022cites this paper
• Morphological, physiological and molecular characteristics of the seedless ‘Hongjiangcheng’ sweet orange

  2022cites this paper
• Alternative proteoforms and proteoform-dependent assemblies in humans and plants

  2022cites this paper
• Global landscape of protein complexes in postprandial-state livers from diet-induced obese and lean mice.

  2022cites this paper
• Comparative proteomics analysis of Arabidopsis thaliana response to light-emitting diode of narrow wavelength 450 nm, 595 nm, and 650 nm.

  2022cites this paper
• Multimerization variants as potential drivers of neofunctionalization

  2021cites this paper
• Mapping the plant proteome: tools for surveying coordinating pathways

  2021cites this paper
• Repeated exposure to epigallocatechin gallate solution or water alters bitterness intensity and salivary protein profile.

  2021cites this paper
• A co-fractionation mass spectrometry-based prediction of protein complex assemblies in the developing rice aleurone-subaleurone

  2021cites this paper
• Inclusion of Oat and Yeast Culture in Sow Gestational and Lactational Diets Alters Immune and Antimicrobial Associated Proteins in Milk

  2021cites this paper
• The prevalence of improper solution‐making technique places molar solutions in crisis

  2020cites this paper
• Effective electrochemotherapy with curcumin in MDA-MB-231-human, triple negative breast cancer cells: A global proteomics study.

  2020cites this paper
• Global Landscape of Native Protein Complexes in Synechocystis sp. PCC 6803

  2020cites this paper
• High-throughput, Label-Free Quantitative Proteomic Studies of the Anticancer Effects of Electrical Pulses with Turmeric Silver Nanoparticles: an in vitro Model Study

  2020cites this paper
• QTL and eQTL mapping associated with host response to Candidatus Liberibacter asiaticus in citrandarins

  2020cites this paper
• Addition of chocolate milk to diet corresponds to protein concentration changes in human saliva.

  2020cites this paper
• Proteomic identification of aerobic glycolysis as a potential metabolic target for methylglyoxal in adipocytes.

  2020cites this paper
• Gut Microbiome and Its Impact on Health and Diseases

  2020cites this paper
• Recent advances on protein separation and purification methods.

  2020cites this paper
• Impact of Gut Microbiota on Host by Exploring Proteomics

  2020cites this paper
• A pan-plant protein complex map reveals deep conservation and novel assemblies

  2019cites this paper
• PROMIS: Global Analysis of PROtein-Metabolite Interactions.

  2019cites this paper
• Next-generation Interactomics: Considerations for the Use of Co-elution to Measure Protein Interaction Networks*

  2019cites this paper
• Performance evaluation measures for protein complex prediction.

  2019cites this paper
• Differential distributions of trafficking and signaling proteins of the maize ER-Golgi apparatus

  2019cites this paper
• Quantitative proteomic analysis of enhanced cellular effects of electrochemotherapy with Cisplatin in triple-negative breast cancer cells

  2019cites this paper
• Protein Complex Identification and quantitative complexome by CN-PAGE

  2019cites this paper
• Computational identification of protein-protein interactions in model plant proteomes

  2019cites this paper
• Label-free measurements on the solution of monomeric and dimeric insulin using a periodical terahertz split ring resonator

  2019cites this paper
• Complexome Profiling Reveals Association of PPR Proteins with Ribosomes in the Mitochondria of Plants

  2019cites this paper
• Diet Impacts Pre-implantation Histotroph Proteomes in Beef Cattle.

  2018cites this paper
• Analysis of Human Nuclear Protein Complexes by Quantitative Mass Spectrometry Profiling

  2018cites this paper
• Proteomic analysis of RAW macrophages treated with cGAMP or c-di-GMP reveals differentially activated cellular pathways

  2018cites this paper
• Global Identification of Protein Complexes within the Membrane Proteome of Arabidopsis Roots Using a SEC-MS Approach.

  2018cites this paper
• Analysis of Protein Complexes in the Unicellular Cyanobacterium Cyanothece ATCC 51142.

  2018cites this paper
• Proteomic Analysis Reveals That an Extract of the Plant Lippia origanoides Suppresses Mitochondrial Metabolism in Triple-Negative Breast Cancer Cells.

  2018cites this paper
• MADS transcription factors cooperate: complexities of complex formation

  2018cites this paper
• Hit-Gel: Streamlining in-gel protein digestion for high-throughput proteomics experiments

  2018cites this paper
• Large Scale Proteomic Data and Network-Based Systems Biology Approaches to Explore the Plant World

  2018cites this paper
• Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling*

  2017influential citation