Binding of the sigma 70 protein to the core subunits of Escherichia coli RNA polymerase, studied by iron-EDTA protein footprinting.

No abstract is available for this paper.

• Publication year

  1996

• Venue

  Proceedings of the National Academy of Sciences of the United States of America

• Publication date

  1996-01-09

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1073/PNAS.93.1.71PMID 8552678PMCID PMC40180
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Contamination in trace element analysis and its control.

  2006cited by this paper
• Proximity mapping the surface of a membrane protein using an artificial protease: demonstration that the quinone-binding domain of subunit I is near the N-terminal region of subunit II of cytochrome bd.

  1995cited by this paper
• rpoE, the gene encoding the second heat‐shock sigma factor, sigma E, in Escherichia coli.

  1995cited by this paper
• TFIIIB placement on a yeast U6 RNA gene in vivo is directed primarily by TFIIIC rather than by sequence-specific DNA contacts

  1995cited by this paper
• TATA-binding Protein Residues Implicated in a Functional Interplay between Negative Cofactor NC2 (Dr1) and General Factors TFIIA and TFIIB (*)

  1995cited by this paper
• Promoter determinants for Escherichia coli RNA polymerase holoenzyme containing sigma 38 (the rpoS gene product).

  1995cited by this paper
• Assembly of transcriptionally active RNA polymerase I initiation factor SL1 from recombinant subunits.

  1994cited by this paper
• Mapping staphylococcal nuclease conformation using an EDTA-Fe derivative attached to genetically engineered cysteine residues.

  1994cited by this paper
• Protein footprinting by the combined use of reversible and irreversible lysine modifications.

  1994cited by this paper
• Use of aryl azide cross-linkers to investigate protein-protein interactions: an optimization of important conditions as applied to Escherichia coli RNA polymerase and localization of a sigma 70-alpha cross-link to the C-terminal region of alpha.

  1994cited by this paper
• Mapping protein domains involved in macromolecular interactions: a novel protein footprinting approach.

  1994cited by this paper
• Multiple sets of basal factors initiate transcription by RNA polymerase II.

  1994cited by this paper
• The isolated catalytic domain of NIFA, a bacterial enhancer-binding protein, activates transcription in vitro: activation is inhibited by NIFL.

  1994cited by this paper
• Pharmacokinetics of pretargeted monoclonal antibody 2D12.5 and 88Y-Janus-2-(p-nitrobenzyl)-1,4,7,10-tetraazacyclododecanetetraacetic acid (DOTA) in BALB/c mice with KHJJ mouse adenocarcinoma: a model for 90Y radioimmunotherapy.

  1994cited by this paper
• New models for the mechanism of transcription elongation and its regulation.

  1992cited by this paper
• Transfer of oxygen from an artificial protease to peptide carbon during proteolysis.

  1991cited by this paper
• A beta subunit mutation disrupting the catalytic function of Escherichia coli RNA polymerase.

  1991cited by this paper
• Use of Mono Q high-resolution ion-exchange chromatography to obtain highly pure and active Escherichia coli RNA polymerase.

  1990cited by this paper
• Surface, subunit interfaces and interior of oligomeric proteins.

  1988cited by this paper
• Synthetic peptide vaccine design: synthesis and properties of a high-density multiple antigenic peptide system.

  1988cited by this paper
• Genetic studies on the beta subunit of Escherichia coli RNA polymerase. IX. The role of the carboxy-terminus in enzyme assembly.

  1986cited by this paper
• Nonenzymatic cleavage of proteins by reactive oxygen species generated by dithiothreitol and iron.

  1985cited by this paper
• The primary structure of E. coli RNA polymerase, Nucleotide sequence of the rpoC gene and amino acid sequence of the beta'-subunit

  1982cited by this paper
• The primary structure of Escherichia coli RNA polymerase. Nucleotide sequence of the rpoB gene and amino-acid sequence of the beta-subunit.

  1981cited by this paper
• Diffusion-enhanced energy transfer shows accessibility of ribonucleic acid polymerase inhibitor binding sites.

  1981cited by this paper
• A centrifuged-column procedure for the measurement of ligand binding by beef heart F1.

  1979cited by this paper
• Purification and properties of the sigma subunit of Escherichia coli DNA-dependent RNA polymerase.

  1979cited by this paper
• A study of the quaternary structure of Escherichia coli RNA polymerase using bis(imido esters).

  1977cited by this paper
• Subunit topography of RNA polymerase from Escherichia coli. A cross-linking study with bifunctional reagents.

  1977cited by this paper
• Primary structure of alpha-subunit of DNA-dependent RNA polymerase from Escherichia coli.

  1977cited by this paper
• Oxidative modification of proteins in the presence of ferrous ion and air. Effect of ionic constituents of the reaction medium on the nature of the oxidation products.

  1973cited by this paper
• Factor Stimulating Transcription by RNA Polymerase

  1969cited by this paper
• DNA-dependent RNA polymerase from E. coli: studies on the role of sigma in chain initiation.

  1969cited by this paper
• Cyclic Re-use of the RNA Polymerase Sigma Factor

  1969cited by this paper

• Peptide Hydrolysis by Metal (Oxa)cyclen Complexes: Revisiting the Mechanism and Assessing Ligand Effects.

  2021cites this paper
• Hydrolysis of chemically distinct sites of human serum albumin by polyoxometalate: A hybrid QM/MM (ONIOM) study

  2018cites this paper
• Site-Selective Peptide/Protein Cleavage.

  2015cites this paper
• Peptide Hydrolysis by Metal-Cyclen Complexes and Their Analogues: Insights from Theoretical Studies

  2014cites this paper
• Asparagine-selective cleavage of peptide bonds through hypervalent iodine-mediated Hofmann rearrangement in neutral aqueous solution

  2014cites this paper
• Mechanistic insights into metal (Pd2+, Co2+, and Zn2+)-β-cyclodextrin catalyzed peptide hydrolysis: a QM/MM approach.

  2014cites this paper
• High Pressure and Prokaryotes

  2011cites this paper
• Selective inactivation of serine proteases by nonheme iron complexes.

  2011cites this paper
• Purification of core enzyme of Escherichia coli RNA polymerase by affinity chromatography

  2010cites this paper
• Molecular Biology of the Model Piezophile, Shewanella violacea DSS12

  2008cites this paper
• In vacuo formation of peptide-metal coordination complexes.

  2008cites this paper
• Proteins, Under High-Pressure Environments

  2007cites this paper
• Cleavage of peptides and proteins using light-generated radicals from titanium dioxide.

  2007cites this paper
• Zr(IV)-Assisted Peptide Hydrolysis

  2007cites this paper
• Proteins, Under High-Pressure Environments:-Discoveries of deep-sea piezophiles, and their pressure adapted enzymes-

  2007cites this paper
• Design and synthesis of artificial phospholipid for selective cleavage of integral membrane protein.

  2005cites this paper
• Protease Footprinting

  2005influential citation
• The Chemical Cleavage of Peptide Bonds

  2004cites this paper
• Differential pressure resistance in the activity of RNA polymerase isolated from Shewanella violacea and Escherichia coli

  2004cites this paper
• Temporal Changes in Phosphoglycerate Kinase Coding Sequences: A Quantitative Measure

  2003cites this paper
• Principles and methods of affinity cleavage in studying transcription.

  2003cites this paper
• Proteolytic DNA for mapping protein-DNA interactions.

  2002cites this paper
• The interaction between σS, the stationary phase σ factor, and the core enzyme of Escherichia coli RNA polymerase

  2002influential citation
• Use of a fluorescence microplate reader for the detection and characterization of metal-assisted peptide hydrolysis.

  2001cites this paper
• Generation of new enzymes via covalent modification of existing proteins.

  2001cites this paper
• Artificial iron-dependent proteases.

  2001cites this paper
• Functional complementation between mutations at two distant positions in Escherichia coli RNA polymerase as revealed by second-site suppression

  2001cites this paper
• Hydroxyl radical footprinting of proteins using metal ion complexes.

  2001cites this paper
• Catalytic hydrolysis of peptides by cerium(IV).

  2000cites this paper
• Mapping of Subunit-Subunit Contact Surfaces on the β′ Subunit of Escherichia coli RNA Polymerase*

  2000cites this paper
• Identifying a Core RNA Polymerase Surface Critical for Interactions with a Sigma-Like Specificity Factor

  2000cites this paper
• Catalytic Hydrolysis of Peptides by Cerium(IV)

  2000cites this paper
• Conservation of sigma–core RNA polymerase proximity relationships between the enhancer‐independent and enhancer‐dependent sigma classes

  2000cites this paper
• Protein-protein interactions mapped by artificial proteases: where sigma factors bind to RNA polymerase.

  2000cites this paper
• Identification of the sites of hydroxyl radical reaction with peptides by hydrogen/deuterium exchange: prevalence of reactions with the side chains.

  2000cites this paper
• Protein footprinting at cysteines: probing ATP-modulated contacts in cysteine-substitution mutants of yeast DNA topoisomerase II.

  1999cites this paper
• Targeted protein footprinting: where different transcription factors bind to RNA polymerase.

  1999cites this paper
• Sequences in sigmaN determining holoenzyme formation and properties.

  1999cites this paper
• Suppression analysis of positive control mutants of NifA reveals two overlapping promoters for Klebsiella pneumoniae rpoN.

  1999cites this paper
• Replacement of vegetative sigmaA by sporulation-specific sigmaF as a component of the RNA polymerase holoenzyme in sporulating Bacillus subtilis.

  1999cites this paper
• Ligand-linked structural changes in the Escherichia coli biotin repressor: the significance of surface loops for binding and allostery.

  1999cites this paper
• Replacement of Vegetative ςA by Sporulation-Specific ςF as a Component of the RNA Polymerase Holoenzyme in Sporulating Bacillus subtilis

  1999cites this paper
• Mapping protein-protein interactions with a library of tethered cutting reagents: the binding site of sigma 70 on Escherichia coli RNA polymerase.

  1999cites this paper
• MerR cross-links to the alpha, beta, and sigma 70 subunits of RNA polymerase in the preinitiation complex at the merTPCAD promoter.

  1999cites this paper
• Region I modifies DNA-binding domain conformation of sigma 54 within the holoenzyme.

  1999cites this paper
• Fluorescence-based protein footprinting using histidine-tagged protein.

  1998cites this paper
• Mapping the sigma70 subunit contact sites on Escherichia coli RNA polymerase with a sigma70-conjugated chemical protease.

  1998cites this paper
• Core–sigma interaction: probing the interaction of the bacteriophage T4 gene 55 promoter recognition protein with E.coli RNA polymerase core

  1998cites this paper
• Dimeric association of Escherichia coli RNA polymerase alpha subunits, studied by cleavage of single-cysteine alpha subunits conjugated to iron-(S)-1-[p-(bromoacetamido)benzyl]ethylenediaminetetraacetate.

  1998cites this paper
• Regioselective Cleavage by a Palladium(II) Aqua Complex of a Polypeptide in Different Overall Conformations.

  1998cites this paper
• Mapping substrate-induced conformational changes in cAMP-dependent protein kinase by protein footprinting.

  1998cites this paper
• Protein Footprinting Reveals Specific Binding Modes of a High Mobility Group Protein I to DNAs of Different Conformation*

  1998cites this paper
• Mapping the σ70 subunit contact sites on Escherichia coli RNA polymerase with a σ70-conjugated chemical protease

  1998cites this paper
• Lanthanide ion-induced hydrolyses of alkyl esters and amides of α-amino acids†

  1998cites this paper
• Protease activity of 1,10-phenanthroline-copper(I). Targeted scission of the catalytic site of carbonic anhydrase.

  1998cites this paper
• RNA Polymerase-Promoter Interactions: the Comings and Goings of RNA Polymerase

  1998cites this paper
• Functional dissection of the B" component of RNA polymerase III transcription factor IIIB: a scaffolding protein with multiple roles in assembly and initiation of transcription

  1997influential citation
• Synthesis of the protein cutting reagent iron (S)-1-(p-bromoacetamidobenzyl)ethylenediaminetetraacetate and conjugation to cysteine side chains.

  1997cites this paper
• Regions of the Escherichia coli primary sigma factor σ70 that are involved in interaction with RNA polymerase core enzyme

  1997cites this paper
• Probing the assembly of transcription initiation complexes through changes in sigmaN protease sensitivity.

  1997cites this paper
• Protease Footprinting Analysis of Ternary Complex Formation by Human TFIIA*

  1997cites this paper
• Synthesis of an amino acid analogue to incorporate p-aminobenzyl-EDTA in peptides.

  1997cites this paper
• Mapping conformational changes in a protein: application of a protein footprinting technique to cAMP-induced conformational changes in cAMP receptor protein.

  1997cites this paper
• A shared subunit belongs to the eukaryotic core RNA polymerase.

  1997cites this paper
• Identification of three regions essential for interaction between a sigma-like factor and core RNA polymerase.

  1997cites this paper
• Footprinting of Yeast DNA Topoisomerase II Lysyl Side Chains Involved in Substrate Binding and Interdomainal Interactions*

  1997cites this paper
• Radiolytic protein surface mapping.

  1996cites this paper
• Lymphoma-selective antibody Lym-1 recognizes a discontinuous epitope on the light chain of HLA-DR10

  1996cites this paper
• Determinants of RNA polymerase alpha subunit for interaction with beta, beta', and sigma subunits: hydroxyl-radical protein footprinting.

  1996cites this paper
• Molecular anatomy of the β′ subunit of the E. coli RNA polymerase: identification of regions involved in polymerase assembly

  1996cites this paper