Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences.

No abstract is available for this paper.

• Publication year

  2000

• Venue

  Systematic Biology

• Publication date

  2000-06-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1093/SYSBIO/49.2.278PMID 12118409
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  1998influential reference
• Large-scale phylogenies and measuring the performance of phylogenetic estimators.

  1998cited by this paper
• THE PANTROPICAL GENUS MACROCYBE GEN. NOV.

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• Inferring complex phylogenies.

  1996influential reference
• ON WEIGHTING AND CONGRUENCE

  1996cited by this paper
• Molecular evolutionary dynamics of cytochrome b in strepsirrhine primates: the phylogenetic significance of third-position transversions.

  1996cited by this paper
• Inferring complex phytogenies

  1996influential reference
• PARSIMONY JACKKNIFING OUTPERFORMS NEIGHBOR‐JOINING

  1996cited by this paper
• Progress toward a phylogenetic classification of the Polyporaceae through parsimony analysis of mitochondrial ribosomal DNA sequences

  1995cited by this paper
• Incompatibility in basidiomycetes: The heterogenic Pentax

  1995influential reference
• PHYLOGENETIC DIVERSITY IN SHIITAKE INFERRED FROM NUCLEAR RIBOSOMAL DNA SEQUENCES

  1995cited by this paper
• Phylogenetic relationships in Ganoderma inferred from the internal transcribed spacers and 25S ribosomal DNA sequences

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  1994cited by this paper
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  1994cited by this paper
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• The powers and pitfalls of parsimony

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• Simple diagnostic statistical tests of models for DNA substitution

  1993cited by this paper
• Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences.

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• ON THE RATIONALE AND UTILITY OF WEIGHTING NUCLEOTIDE SEQUENCE DATA

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• Geographic Origins of Human Mitochondrial DNA: Phylogenetic Evidence from Control Region Sequences

  1992cited by this paper
• Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms.

  1992cited by this paper
• Ribosomal DNA: Molecular Evolution and Phylogenetic Inference

  1991cited by this paper
• The discovery and importance of multiple islands of most

  1991influential reference
• Isolation of DNA from fungal mycelia and single spores

  1990cited by this paper
• MAXIMUM LIKELIHOOD INFERENCE OF PHYLOGENETIC TREES, WITH SPECIAL REFERENCE TO A POISSON PROCESS MODEL OF DNA SUBSTITUTION AND TO PARSIMONY ANALYSES

  1990cited by this paper
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  1989cited by this paper
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• CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP

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• Estimation of evolutionary distance between nucleotide sequences.

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• A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

  1980cited by this paper
• Evolution of Protein Molecules

  1979cited by this paper
• Cases in which Parsimony or Compatibility Methods will be Positively Misleading

  1978cited by this paper
• Siderophilous granules in the basidia of Hymenomycetes

  1978cited by this paper
• Basidiomycetes

  1977influential reference
• A Preliminary Agaric Flora of East Africa

  1977influential reference
• The Agaricales in modern taxonomy

  1976influential reference
• Zur Frage der taxonomischen Relevanz chemischer Merkmale bei höheren Pilzen

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• Basidiospore morphology in the Agaricales

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