Application of abductive ILP to learning metabolic network inhibition from temporal data

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Machine-mediated learning

• Publication date

  2006-09-01

• Fields of study

  Mathematics, Computer Science

• Identifiers
  DOI 10.1007/s10994-006-8988-x
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Curve-fitting method for direct quantitation of compounds in complex biological mixtures using 1H NMR: application in metabonomic toxicology studies.

  2005cited by this paper
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  2005cited by this paper
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  2004influential reference
• Modelling Inhibition in Metabolic Pathways Through Abduction and Induction

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• GenePath: a system for automated construction of genetic networks from mutant data

  2003influential reference
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  2003influential reference
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• Metabolic pathways in the post-genome era.

  2003cited by this paper
• Contemporary issues in toxicology the role of metabonomics in toxicology and its evaluation by the COMET project.

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  2002influential reference
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  2001cited by this paper
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  2001cited by this paper
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  2001influential reference
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  2001cited by this paper
• Estimation of Genetic Networks and Functional Structures Between Genes by Using Bayesian Networks and Nonparametric Regression

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• Inverse Entailment for Full Clausal Theories

  2001influential reference
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  2000influential reference
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  2000cited by this paper
• Abductive and inductive reasoning: background and issues

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• The large-scale organization of metabolic networks

  2000cited by this paper
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  1999cited by this paper
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• Metabolic Flux Balancing: Basic Concepts, Scientific and Practical Use

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  1994cited by this paper
• Parallel Abduction in Logic Programming

  1994influential reference
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• The Logic of Scientific Discovery

  1988cited by this paper
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  1987cited by this paper
• The Dynamics of Feedback Control Circuits in Biochemical Pathways

  1978cited by this paper
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  1968cited by this paper
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• The Logic of Scientific Discovery.

  1959cited by this paper
• Essays in the philosophy of science

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  1936cited by this paper
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  1935cited by this paper

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