Deciphering the Diploid Ancestral Genome of the Mesohexaploid Brassica rapa[C][W]

No abstract is available for this paper.

• Publication year

  2013

• Venue

  The Plant Cell

• Publication date

  2013-05-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1105/tpc.113.110486PMID 23653472PMCID PMC3694691
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A generic and tribal synopsis of the Brassicaceae (Cruciferae)

  2012cited by this paper
• Syntenic gene analysis between Brassica rapa and other Brassicaceae species

  2012cited by this paper
• Insights into salt tolerance from the genome of Thellungiella salsuginea

  2012cited by this paper
• Biased Gene Fractionation and Dominant Gene Expression among the Subgenomes of Brassica rapa

  2012cited by this paper
• Altered Patterns of Fractionation and Exon Deletions in Brassica rapa Support a Two-Step Model of Paleohexaploidy

  2012cited by this paper
• Unleashing the Genome of Brassica Rapa

  2012cited by this paper
• The genome of the extremophile crucifer Thellungiella parvula

  2011influential reference
• A comparative genomic map for Caulanthus amplexicaulis and related species (Brassicaceae)

  2011influential reference
• The mosaic of ancestral karyotype blocks in the Sinapis alba L. genome.

  2011influential reference
• Extensive Chromosome Homoeology among Brassiceae Species Were Revealed by Comparative Genetic Mapping with High-Density EST-Based SNP Markers in Radish (Raphanus sativus L.)

  2011influential reference
• MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

  2011cited by this paper
• An EST-SSR Linkage Map of Raphanus sativus and Comparative Genomics of the Brassicaceae

  2011cited by this paper
• BRAD, the genetics and genomics database for Brassica plants

  2011cited by this paper
• Cabbage family affairs: the evolutionary history of Brassicaceae.

  2011cited by this paper
• Interpretation of karyotype evolution should consider chromosome structural constraints.

  2011cited by this paper
• The genome of the mesopolyploid crop species Brassica rapa

  2011cited by this paper
• Rapid divergence of repetitive DNAs in Brassica relatives.

  2011cited by this paper
• The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

  2011cited by this paper
• Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution.

  2010cited by this paper
• Sequence and structure of Brassica rapa chromosome A3

  2010cited by this paper
• Island species radiation and karyotypic stasis in Pachycladon allopolyploids

  2010cited by this paper
• Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae

  2009cited by this paper
• Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals

  2009cited by this paper
• Sequenced BAC anchored reference genetic map that reconciles the ten individual chromosomes of Brassica rapa

  2009influential reference
• Complexity of genome evolution by segmental rearrangement in Brassica rapa revealed by sequence-level analysis

  2009cited by this paper
• Brassicaceae phylogeny inferred from phytochrome A and ndhF sequence data: tribes and trichomes revisited.

  2008cited by this paper
• Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes

  2008influential reference
• Chromosomal Phylogeny and Karyotype Evolution in x=7 Crucifer Species (Brassicaceae)[W]

  2008cited by this paper
• KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model Averaging

  2007cited by this paper
• Characterization of the centromere and peri-centromere retrotransposons in Brassica rapa and their distribution in related Brassica species.

  2007cited by this paper
• Ancestral Chromosomal Blocks Are Triplicated in Brassiceae Species with Varying Chromosome Number and Genome Size1

  2007cited by this paper
• Brassicaceae: Chromosome number index and database on CD-Rom

  2006cited by this paper
• Genome evolution in Arabidopsis/Brassica: conservation and divergence of ancient rearranged segments and their breakpoints.

  2006cited by this paper
• Systematics and phylogeny of the Brassicaceae (Cruciferae): an overview

  2006cited by this paper
• The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes.

  2006cited by this paper
• Brassicaceae phylogeny and trichome evolution.

  2006cited by this paper
• Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species.

  2006cited by this paper
• Segmental Structure of the Brassica napus Genome Based on Comparative Analysis With Arabidopsis thaliana

  2005cited by this paper
• Chromosome triplication found across the tribe Brassiceae.

  2005cited by this paper
• Characterization of rDNAs and tandem repeats in the heterochromatin of Brassica rapa.

  2005cited by this paper
• A high-resolution karyotype of Brassica rapa ssp. pekinensis revealed by pachytene analysis and multicolor fluorescence in situ hybridization

  2004cited by this paper
• Versatile and open software for comparing large genomes

  2004influential reference
• The Arabidopsis Genome Sequence as a Tool for Genome Analysis in Brassicaceae. A Comparison of the Arabidopsis and Capsella rubella Genomes1[w]

  2004cited by this paper
• MUSCLE: multiple sequence alignment with high accuracy and high throughput.

  2004influential reference
• Comparing the Linkage Maps of the Close Relatives Arabidopsis lyrata and A. thaliana

  2004cited by this paper
• Chromosomal mapping of Brassica oleracea based on ESTs from Arabidopsis thaliana: complexity of the comparative map

  2003cited by this paper
• Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae).

  2000influential reference
• Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements.

  1998influential reference
• Inter- and intra-genomic homology of the Brassica genomes: implications for their origin and evolution

  1996cited by this paper
• Comparative genome mapping in Brassica.

  1996cited by this paper
• Molecular systematics of Brassica and allied genera (Subtribe Brassicinae, Brassiceae) —chloroplast genome and cytodeme congruence

  1991influential reference
• Taxonomy, cytogenetics and origin of crop brassicas, a review.

  1980cited by this paper
• [Contributions to the analysis of the Brassica-genome].

  1960cited by this paper
• The Chromosomal Relationships in the Swede and Turnip Groups of Brassica

  1934cited by this paper

• Synthetic Raphanobrassica Genome Reveals Functional and Evolutionary Insights Into Clubroot Resistance Genes on Chromosome R5.

  2026cites this paper
• ARGOS Genes in Cauliflower: Genome-Wide Identification and Functional Validation of BobARL2 Under Abiotic Stresses

  2025cites this paper
• Interspecies Conservation of Gene Expression Patterns in Brassica Reproductive Organs Unveiled by Comparative Transcriptomics

  2025cites this paper
• Molecular Mechanism by Which the BrFIT2–BrbHLH–BrIRT1 Module Synergistically Regulates Iron Absorption in Brassica rapa ssp. Pekinensis

  2025cites this paper
• Transport engineering of glucosinolates for future brassica crops.

  2025cites this paper
• Characterization of FLOWERING LOCUS T‐related genes and their putative gene regulatory network in semi‐winter Brassica napus cultivar Zhongshaung11

  2025cites this paper
• High resolution diel transcriptomes of autotetraploid potato reveal expression and sequence conservation among rhythmic genes

  2025cites this paper
• Tissue-Specific Phosphorus Stress Adaptation in Brassica rapa: WGCNA Reveals Root Hormonal Triad and Leaf Lipid Remodeling as Key Tolerance Mechanisms

  2025cites this paper
• Substantial non‐homologous recombination and structural variation results from Brassica AABC and CCAB hybrid meiosis

  2025cites this paper
• Largest genome assembly in Brassicaceae: retrotransposon‐driven genome expansion and karyotype evolution in Matthiola incana

  2025cites this paper
• Mesopolyploidy as a taxonomic clade marker for Brassica and relatives (tribe Brassiceae).

  2025cites this paper
• Clubroot resistant in cruciferous crops: recent advances in genes and QTLs identification and utilization

  2025cites this paper
• Brassica diversity through the lens of polyploidy: genomic evolution, introgression, and homoeologous exchange

  2025cites this paper
• Cell-type-specific defense priming and NHP-dependent systemic immunity against Pectobacterium in Chinese cabbage.

  2025cites this paper
• Transgene-free gene editing of BnaCCD4 homologs significantly improves the carotenoid level of seeds in Brassica napus

  2025cites this paper
• Genome size variation in the Poaceae supertribe Poodae, the major grass lineage of temperate climates (tribes Aveneae, Festuceae and Poeae)

  2025cites this paper
• Telomeric repeat distribution and chromosomal evolution in the slipper orchid genus Paphiopedilum

  2025cites this paper
• Genome-wide identification, phylogenetic, structural and functional evolution of the core components of ABA signaling in plant species: a focus on rice

  2024cites this paper
• Unraveling the mechanism of flower color variation in Brassica napus by integrated metabolome and transcriptome analyses

  2024cites this paper
• Chromosome-level assembly and analysis of Camelina neglecta: a novel diploid model for Camelina biotechnology research

  2024cites this paper
• BL-Hi-C reveals the 3D genome structure of Brassica crops with high sensitivity

  2024cites this paper
• Brassica vegetables—an undervalued nutritional goldmine

  2024cites this paper
• Identification of candidate genes associated with double flowers via integrating BSA-seq and RNA-seq in Brassica napus

  2024cites this paper
• Genomes of Meniocus linifolius and Tetracme quadricornis reveal the ancestral karyotype and genomic features of core Brassicaceae

  2024cites this paper
• Comprehensive identification, characterization, and expression analysis of the MORF gene family in Brassica napus

  2024cites this paper
• Genome-wide analysis of CNGC gene family in Brassica juncea (L.) Czern reveals key targets for stress resistance and crop improvement

  2024cites this paper
• Chromosome-scale reference genome of broccoli (Brassica oleracea var. italica Plenck) provides insights into glucosinolate biosynthesis

  2024cites this paper
• Comparative genomics, microsynteny, ancestral state reconstruction and selection pressure analysis across distinctive genomes and sub-genomes of Brassicaceae for analysis of evolutionary history of VQ gene family

  2023cites this paper
• Genome-Wide Identification of BrCAX Genes and Functional Analysis of BrCAX1 Involved in Ca2+ Transport and Ca2+ Deficiency-Induced Tip-Burn in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)

  2023cites this paper
• Genome-wide identification and expression analysis of the cyclic nucleotide-gated ion channel (CNGC) gene family in Saccharum spontaneum

  2023cites this paper
• The lack of negative association between TE load and subgenome dominance in synthesized Brassica allotetraploids

  2023cites this paper
• PART OF A SPECIAL ISSUE ON POLYPLOIDY IN ECOLOGY AND EVOLUTION Complex polyploid and hybrid species in an apomictic and sexual tropical forage grass group: genomic composition and evolution in Urochloa (Brachiaria) species

  2023influential citation
• Comparison of the chloroplast genomes and phylogenomic analysis of Elaeocarpaceae

  2023cites this paper
• Targeted editing of multiple homologues of GTR1 and GTR2 genes provides the ideal low‐seed, high‐leaf glucosinolate oilseed mustard with uncompromised defence and yield

  2023cites this paper
• A high-quality chromosome-level Eutrema salsugineum genome, an extremophile plant model

  2023cites this paper
• Systematic analysis of MADS-box gene family in the U’s triangle species and targeted mutagenesis of BnaAG homologs to explore its role in floral organ identity in Brassica napus

  2023cites this paper
• Characterization and Coexpression Analysis of the TIFY Family Genes in Euryale ferox Related to Leaf Development

  2023cites this paper
• Multi-species polyploidization, chromosome shuffling, and genome extraction in Zea/Tripsacum hybrids

  2023cites this paper
• Fine mapping of meiotic crossovers in Brassica oleracea reveals patterns and variations depending on direction and combination of crosses.

  2023cites this paper
• Genome wide analysis of BnAPs gene family in <italic>Brassica napus</italic>

  2022cites this paper
• The genome of Orychophragmus violaceus provides genomic insights into the evolution of Brassicaceae polyploidization and its distinct traits

  2022influential citation
• Sinapis genomes provide insights into whole-genome triplication (WGT) and divergence patterns within tribe Brassiceae.

  2022cites this paper
• Genome-Wide Analysis of the Type-B Authentic Response Regulator Gene Family in Brassica napus

  2022cites this paper
• Development of clubroot resistant cabbage line through introgressing six CR loci from Chinese cabbage via interspecific hybridization and embryo rescue

  2022cites this paper
• Molecular Identification of the G-Protein Genes and Their Expression Profiles in Response to Nitrogen Deprivation in Brassica napus

  2022cites this paper
• Molecular evolutionary analysis of the SHI/STY gene family in land plants: A focus on the Brassica species

  2022cites this paper
• Phylogenomics-Based Reconstruction and Molecular Evolutionary Histories of Brassica Photoreceptor Gene Families

  2022cites this paper
• Celebrating Mendel, McClintock, and Darlington: On end-to-end chromosome fusions and nested chromosome fusions.

  2022cites this paper
• Phylogenetic, Structural and Functional Evolution of the LHC Gene Family in Plant Species

  2022cites this paper
• Subgenome dominance and its evolutionary implications in crop domestication and breeding

  2022cites this paper
• The adaptive evolution of Euryale ferox to the aquatic environment through paleo‐hexaploidization

  2022influential citation
• The impacts of allopolyploidization on Methyl-CpG-Binding Domain (MBD) gene family in Brassica napus

  2022cites this paper
• Identification of a biomass unaffected pale green mutant gene in Chinese cabbage (Brassica rapa L. ssp. pekinensis)

  2022cites this paper
• Phylogenomics and rapid diversification of the genus Eutrema on the Qinghai–Tibet Plateau and adjacent regions

  2022cites this paper
• A cluster of transcripts identifies a transition stage initiating leafy head growth in heading morphotypes of Brassica

  2022cites this paper
• Novel gene loci associated with susceptibility or cryptic quantitative resistance to Pyrenopeziza brassicae in Brassica napus

  2022cites this paper
• Differences in pseudogene evolution contributed to the contrasting flavors of turnip and Chiifu, two Brassica rapa subspecies

  2022cites this paper
• Multi-Omics Approaches to Improve Clubroot Resistance in Brassica with a Special Focus on Brassica oleracea L.

  2022cites this paper
• Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae

  2022cites this paper
• Large-scale analyses of heat shock transcription factors and database construction based on whole-genome genes in horticultural and representative plants

  2022cites this paper
• The reference genome and full-length transcriptome of pakchoi provide insights into cuticle formation and heat adaption

  2022cites this paper
• Sat-BSA: an NGS-based method using local de novo assembly of long reads for rapid identification of genomic structural variations associated with agronomic traits

  2021cites this paper
• Functional homoeologous alleles of CONSTANS contribute to seasonal crop type in rapeseed

  2021cites this paper
• The role of the FHA domain-containing protein family in pollen development of Brassica rapa L

  2021cites this paper
• The evolution of the expansin gene family in Brassica species.

  2021cites this paper
• Divergence of the genetic contribution of FRIGIDA homologues in regulating the flowering time in Brassica rapa ssp. rapa.

  2021cites this paper
• Ovule siRNAs methylate protein-coding genes in trans

  2021cites this paper
• Genomic insights into the origin, domestication and diversification of Brassica juncea

  2021cites this paper
• Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa

  2021influential citation
• Embryo Culture and Embryo Rescue in Brassica

  2021cites this paper
• Clubroot in Brassica: Recent advances in genomics, breeding and disease management.

  2021cites this paper
• Brassica carinata genome characterization clarifies U's triangle model of evolution and polyploidy in Brassica.

  2021cites this paper
• Using wild relatives and related species to build climate resilience in Brassica crops

  2021cites this paper
• Insights from the genomes of four diploid Camelina spp.

  2021cites this paper
• Chromosome number is key to longevity of polyploid lineages.

  2021cites this paper
• Comprehensive Analysis of Evolutionary Characterization and Expression for Monosaccharide Transporter Family Genes in Nelumbo nucifera

  2021cites this paper
• Population Genomics of Brassica Species

  2021cites this paper
• BrCNGC gene family in field mustard: genome-wide identification, characterization, comparative synteny, evolution and expression profiling

  2021cites this paper
• BRAD V3.0: an upgraded Brassicaceae database

  2021cites this paper
• In silico analysis and expression profiling revealed Rlm1′ blackleg disease-resistant genes in Chromosome 6 of Brassica oleracea

  2021cites this paper
• Comprehensive Analysis of Arabinogalactan Protein-Encoding Genes Reveals the Involvement of Three BrFLA Genes in Pollen Germination in Brassica rapa

  2021cites this paper
• Genome-Wide Identification and Function of Aquaporin Genes During Dormancy and Sprouting Periods of Kernel-Using Apricot (Prunus armeniaca L.)

  2021cites this paper
• Karyotype Reorganization in Wheat–Rye Hybrids Obtained via Unreduced Gametes: Is There a Limit to the Chromosome Number in Triticale?

  2021cites this paper
• Genome structural evolution in Brassica crops

  2021cites this paper
• Insights Into the Molecular Evolution of AT-Hook Motif Nuclear Localization Genes in Brassica napus

  2021cites this paper
• Non-homologous chromosome pairing during meiosis in haploid Brassica rapa

  2021cites this paper
• Utilization of Ogura CMS germplasm with the clubroot resistance gene by fertility restoration and cytoplasm replacement in Brassica oleracea L

  2020cites this paper
• Discovery of novel functions of minor ZGA gene on heart and vascular regulation in Golden pompano genome provides clues for anti-cancer therapeutic strategies

  2020cites this paper
• Segmental Translocation Contributed to the Origin of the Brassica S-locus

  2020cites this paper
• Genomic Blocks in Aethionema arabicum Support Arabideae as Next Diverging Clade in Brassicaceae

  2020cites this paper
• In-silico identification and differential expressions of LepR4-syntenic disease resistance related domain containing genes against blackleg causal fungus Leptosphaeria maculans in Brassica oleracea

  2020cites this paper
• Genome-wide analysis of proline-rich extension-like receptor protein kinase (PERK) in Brassica rapa and its association with the pollen development

  2020cites this paper
• A New Tree-Based Methodological Framework to Infer the Evolutionary History of Mesopolyploid Lineages: An Application to the Brassiceae Tribe (Brassicaceae)

  2020cites this paper
• Genome-Wide Analysis of the Lateral Organ Boundaries Domain Gene Family in Brassica Napus

  2020cites this paper
• Genome-wide identi cation and expression analysis of chitin-binding gene family in Brassica oleracea L. reveals its role in different disease resistance

  2020cites this paper
• Identification, evolution and expression analyses of whole genome-wide TLP gene family in Brassica napus

  2020cites this paper
• A chromosome-scale genome assembly of Isatis indigotica, an important medicinal plant used in traditional Chinese medicine

  2020cites this paper
• Impact of whole genome triplication on the evolutionary history and the functional dynamics of regulatory genes involved in Brassica self-incompatibility signalling pathway

  2020cites this paper
• The Plant Family Brassicaceae: Introduction, Biology, And Importance

  2020cites this paper
• Linked by Ancestral Bonds: Multiple Whole-Genome Duplications and Reticulate Evolution in a Brassicaceae Tribe

  2020cites this paper