Oscillations in supercoiling drive circadian gene expression in cyanobacteria

No abstract is available for this paper.

• Publication year

  2009

• Venue

  Proceedings of the National Academy of Sciences of the United States of America

• Publication date

  2009-12-29

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1073/pnas.0912673106PMID 20018699PMCID PMC2799730
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Chronobiology: Biological Timekeeping

  2009cited by this paper
• Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus

  2009influential reference
• DNA supercoiling regulates the stress-inducible expression of genes in the cyanobacterium Synechocystis.

  2009cited by this paper
• DNA supercoiling by DNA gyrase

  2008cited by this paper
• Circadian rhythms of superhelical status of DNA in cyanobacteria

  2007influential reference
• Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus.

  2006influential reference
• Analysis of Pleiotropic Transcriptional Profiles: A Case Study of DNA Gyrase Inhibition

  2006cited by this paper
• Global Analysis of Circadian Expression in the Cyanobacterium Synechocystis sp. Strain PCC 6803

  2005cited by this paper
• Reconstitution of Circadian Oscillation of Cyanobacterial KaiC Phosphorylation in Vitro

  2005influential reference
• No Transcription-Translation Feedback in Circadian Rhythm of KaiC Phosphorylation

  2005cited by this paper
• Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli

  2004cited by this paper
• Phase Determination of Circadian Gene Expression in Synechococcus Elongatus PCC 7942

  2004cited by this paper
• A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli.

  2003cited by this paper
• A cyanobacterial circadian timing mechanism.

  2003cited by this paper
• Topoisomerase function during bacterial responses to environmental challenge.

  2003cited by this paper
• Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA

  2002cited by this paper
• The KEGG databases at GenomeNet

  2002cited by this paper
• KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria

  2002cited by this paper
• Circadian programming in cyanobacteria.

  2001cited by this paper
• Molecular Cloning: A Laboratory Manual

  2001cited by this paper
• The bacterial replicative helicase DnaB evolved from a RecA duplication.

  2000cited by this paper
• A New Circadian Class 2 Gene, opcA, Whose Product Is Important for Reductant Production at Night in Synechococcus elongatus PCC 7942

  2000cited by this paper
• Application of bioluminescence to the study of circadian rhythms in cyanobacteria.

  2000cited by this paper
• Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria.

  1998influential reference
• DNA Supercoiling and Osmoresistance in Bacillus subtilis 168

  1997cited by this paper
• Circadian expression of genes involved in the purine biosynthetic pathway of the cyanobacterium Synechococcus sp. strain PCC 7942

  1996cited by this paper
• Circadian orchestration of gene expression in cyanobacteria.

  1995cited by this paper
• Topoisomerase activity during the heat shock response in Escherichia coli K-12

  1995cited by this paper
• Bacterial luciferase as a reporter of circadian gene expression in cyanobacteria

  1995cited by this paper
• Promoters responsive to DNA bending: a common theme in prokaryotic gene expression.

  1994cited by this paper
• Circadian rhythms in prokaryotes: luciferase as a reporter of circadian gene expression in cyanobacteria.

  1993cited by this paper
• Structural analysis of the acfA and acfD genes of Vibrio cholerae: effects of DNA topology and transcriptional activators on expression

  1992cited by this paper
• Expression of the psbDII gene in Synechococcus sp. strain PCC 7942 requires sequences downstream of the transcription start site

  1991cited by this paper
• Bacterial DNA supercoiling and [ATP]/[ADP]. Changes associated with a transition to anaerobic growth.

  1991cited by this paper
• Bacterial DNA supercoiling and [ATP]/[ADP] ratio: changes associated with salt shock

  1991cited by this paper
• A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli.

  1988cited by this paper
• Regulation of the genes for E. coli DNA gyrase: homeostatic control of DNA supercoiling.

  1983cited by this paper

• Effects of the signaling molecule cyclic-di-GMP on cyanobacterial circadian rhythm in Synechococcus elongatus PCC 7942

  2026cites this paper
• Differential effect of supercoiling on bacterial transcription in topological domains

  2025cites this paper
• The chromosome partitioning protein ParB influences the polyploidy of Synechocystis sp. PCC 6803

  2025cites this paper
• Dynamic basis of supercoiling-dependent DNA interrogation by Cas12a via R-loop intermediates

  2025cites this paper
• Gene network centrality analysis identifies key regulators coordinating day-night metabolic transitions in Synechococcus elongatus PCC 7942 despite limited accuracy in predicting direct regulator-gene interactions

  2025influential citation
• Self-sustained rhythmic behavior of Synechocystis sp. PCC 6803 under continuous light conditions in the absence of light–dark entrainment

  2025cites this paper
• Mutations in the circadian cycle drive adaptive plasticity in cyanobacteria

  2025cites this paper
• HIGH CO2 LEVELS OVERCOME THE NIGHTTIME LETHALITY OF CIRCADIAN MUTANTS IN CYANOBACTERIA

  2025cites this paper
• Machine learning reveals the transcriptional regulatory network and circadian dynamics of Synechococcus elongatus PCC 7942

  2024cites this paper
• DNA as a Double-Coding Device for Information Conversion and Organization of a Self-Referential Unity

  2024cites this paper
• Diel Cycle Proteomics: Illuminating Molecular Dynamics in Purple Bacteria for Optimized Biotechnological Applications

  2024cites this paper
• Multi-Omics Reveals Temporal Scales of Carbon Metabolism in Synechococcus Elongatus PCC 7942 Under Light Disturbance

  2024cites this paper
• Clocking out and letting go to unleash green biotech applications in a photosynthetic host

  2024cites this paper
• Topoisomerase-modulated genome-wide DNA supercoiling domains colocalize with nuclear compartments and regulate human gene expression

  2024cites this paper
• Diel expression dynamics in filamentous cyanobacteria

  2024cites this paper
• Intracellular metabolomic profiling of Picochlorum sp. under diurnal conditions mimicking outdoor light, temperature, and seasonal variations

  2024cites this paper
• The Function, Regulation, and Mechanism of Protein Turnover in Circadian Systems in Neurospora and Other Species

  2024cites this paper
• The cyanobacterial circadian clock couples to pulsatile processes using pulse amplitude modulation.

  2024cites this paper
• The impact of the sequence-dependent physical properties of DNA on chromatin dynamics.

  2023cites this paper
• Self-sustained rhythmic behavior of Synechocystis PCC 6803 under continuous light conditions in the absence of light-dark entrainment

  2023cites this paper
• Circadian regulation of metabolism across photosynthetic organisms

  2023influential citation
• The alternative sigma factor RpoD4 pulses at division and links the clock and the cell cycle in Synechococcus elongatus

  2023cites this paper
• Expression of Weimberg xylose utilization pathway for succinate production by cyanobacteria under diurnal condition

  2023cites this paper
• Synechocystis: A model system for expanding the study of cyanobacterial circadian rhythms

  2023cites this paper
• Fast or slow? Clock readout sets internal periods

  2023cites this paper
• Manipulation of topoisomerase expression inhibits cell division but not growth and reveals a distinctive promoter structure in Synechocystis

  2022cites this paper
• KaiC-like proteins improve stress resistance in environmental Pseudomonas species

  2022cites this paper
• Prediction of Time Series Gene Expression and Structural Analysis of Gene Regulatory Networks Using Recurrent Neural Networks

  2022cites this paper
• Supplementary Information for Quantitative contribution of the spacer length in the supercoiling-sensitivity of bacterial promoters

  2022cites this paper
• Spatiotemporal Coupling of DNA Supercoiling and Genomic Sequence Organization—A Timing Chain for the Bacterial Growth Cycle?

  2022cites this paper
• KaiC-like proteins contribute to stress resistance and biofilm formation in environmental Pseudomonas species.

  2022cites this paper
• The role of spatiotemporal organization and dynamics of clock complexes in circadian regulation.

  2022cites this paper
• Reprogramming Metabolic Networks and Manipulating Circadian Clocks for Biotechnological Applications

  2021cites this paper
• Diversity of Timing Systems in Cyanobacteria and Beyond

  2021cites this paper
• The Bacterial Perspective on Circadian Clocks

  2021cites this paper
• The circadian clock ensures successful DNA replication in cyanobacteria

  2021cites this paper
• Genetic Responses of Metabolically Active Limnospira indica Strain PCC 8005 Exposed to γ-Radiation during Its Lifecycle

  2021cites this paper
• Role of the Discriminator Sequence in the Supercoiling Sensitivity of Bacterial Promoters

  2021cites this paper
• An In Vitro Approach to Elucidating Clock-Modulating Metabolites

  2021cites this paper
• Diversity and Functions of Type II Topoisomerases

  2021cites this paper
• DNA mechanics and its impact on biological processes.

  2021cites this paper
• Uncoupling of the Diurnal Growth Program by Artificial Genome Relaxation in Synechocystis sp. PCC 6803

  2021influential citation
• Omics-Inferred Partitioning and Expression of Diverse Biogeochemical Functions in a Low-O2 Cyanobacterial Mat Community

  2021cites this paper
• Circadian Programmes in Cyanobacteria

  2021cites this paper
• Probing the metabolism of γ-glutamyl peptides in cyanobacteria via metabolite profiling and 13 C labeling.

  2021cites this paper
• Shift in Conformational Equilibrium Underlies the Oscillatory Phosphoryl Transfer Reaction in the Circadian Clock

  2021cites this paper
• Introduction

  2021cites this paper
• Plasmid supercoiling decreases during the dark phase in cyanobacteria: a clarification of the interpretation of chloroquine-agarose gels

  2021cites this paper
• Diurnal Regulation of In Vivo Localization and CO2-Fixing Activity of Carboxysomes in Synechococcus elongatus PCC 7942

  2020cites this paper
• The discriminator sequence is a primary determinant in the supercoiling response of bacterial promoters

  2020cites this paper
• The Circadian Clock—A Molecular Tool for Survival in Cyanobacteria

  2020influential citation
• Dynamic Inventory of Intermediate Metabolites of Cyanobacteria in a Diurnal Cycle

  2020cites this paper
• Functional and Regulatory Roles of Fold-Switching Proteins.

  2020cites this paper
• Bacterial promoter opening underpins ubiquitous transcriptional regulation by DNA supercoiling

  2020influential citation
• A Mechanistic Model of the Regulation of Division Timing by the Circadian Clock in Cyanobacteria.

  2020cites this paper
• Circadian Clocks in Cyanobacteria

  2020cites this paper
• Gene Expression Measurement Module (GEMM) for space application: Design and validation.

  2019cites this paper
• Mechanical Properties of DNA Replication

  2019cites this paper
• Circadian rhythms in the three-dimensional genome: implications of chromatin interactions for cyclic transcription

  2019cites this paper
• The circadian clock and darkness control natural competence in cyanobacteria

  2019cites this paper
• Regulation of transcription through the secondary channel of RNA polymerase

  2019cites this paper
• A Hard Day's Night: Cyanobacteria in Diel Cycles.

  2019cites this paper
• Identifying Physical Causes of Apparent Enhanced Cyclization of Short DNA Molecules with a Coarse-Grained Model

  2019cites this paper
• Holobiont chronobiology: mycorrhiza may be a key to linking aboveground and underground rhythms

  2019cites this paper
• Time-of-day-dependent responses of cyanobacterial cellular viability against oxidative stress

  2019cites this paper
• Toxicity mechanisms of ZnO UV-filters used in sunscreens toward the model cyanobacteria Synechococcus elongatus PCC 7942

  2019cites this paper
• Large Scale-Free Network Organization is Likely Key for Biofilm Phase Transition

  2019cites this paper
• Transcription in cyanobacteria: a distinctive machinery and putative mechanisms.

  2019cites this paper
• A model for the regulation of the timing of cell division by the circadian clock in the cyanobacterium Synechococcus elongatus

  2019cites this paper
• Circadian clock helps cyanobacteria manage energy in coastal and high latitude ocean

  2019cites this paper
• DNA Supercoiling: an Ancestral Regulator of Gene Expression in Pathogenic Bacteria?

  2019cites this paper
• Recent advances in synthetic biology of cyanobacteria

  2018cites this paper
• Genome-wide fitness assessment during diurnal growth reveals an expanded role of the cyanobacterial circadian clock protein KaiA

  2018cites this paper
• Roles for ClpXP in regulating the circadian clock in Synechococcus elongatus

  2018cites this paper
• [Progress and perspectives on cyanobacterial ploidy].

  2018influential citation
• Computational modelling unravels the precise clockwork of cyanobacteria

  2018cites this paper
• An RpaA-Dependent Sigma Factor Cascade Sets the Timing of Circadian Transcriptional Rhythms in Synechococcus elongatus.

  2018cites this paper
• High-throughput interaction screens illuminate the role of c-di-AMP in cyanobacterial nighttime survival

  2018cites this paper
• Discovery and characterization of Synechocystis sp. PCC 6803 light-entrained promoters in diurnal light:dark cycles

  2018cites this paper
• Analysis of diurnal gene regulation and metabolic diversity in Synechocystis sp. PCC 6803 and other phototrophic cyanobacteria

  2018influential citation
• Mechanisms of Output Signaling from a Circadian Oscillator

  2018cites this paper
• Structure, function, and mechanism of the core circadian clock in cyanobacteria

  2018cites this paper
• A Clock-Phased Sigma Factor Cascade Is Required for Global Circadian Transcriptional Rhythms in Cyanobacteria

  2017influential citation
• Structural basis of the day-night transition in a bacterial circadian clock

  2017cites this paper
• Timing the day: what makes bacterial clocks tick?

  2017cites this paper
• The cyanobacterial circadian clock follows midday in vivo and in vitro

  2017cites this paper
• Redox crisis underlies conditional light–dark lethality in cyanobacterial mutants that lack the circadian regulator, RpaA

  2017cites this paper
• Natural changes in light interact with circadian regulation at promoters to control gene expression in cyanobacteria

  2017influential citation
• Circadian Clocks in the Real World: Effects of Dynamic Light Regimes on the Regulation of Circadian Gene Expression in Cyanobacteria

  2017influential citation
• Evaluating Light‐Induced Promoters for the Control of Heterologous Gene Expression in Synechocystis sp. PCC 6803

  2017cites this paper
• Temporal organization of cellular growth in Saccharomyces cerevisiae

  2017cites this paper
• Étude de la transcription par des techniques à haut-débit chez le dinoflagellé Lingulodinium polyedrum

  2017cites this paper
• Switching of metabolic programs in response to light availability is an essential function of the cyanobacterial circadian clock

  2017cites this paper
• Switching of metabolic programs in response to light availability is an essential function of the cyanobacterial circadian output pathway

  2017influential citation
• Costs of Clock-Environment Misalignment in Individual Cyanobacterial Cells

  2016influential citation
• Frequency doubling in the cyanobacterial circadian clock

  2016cites this paper
• The stringent response regulates adaptation to darkness in the cyanobacterium Synechococcus elongatus

  2016cites this paper
• Regulatory (pan-)genome of an obligate intracellular pathogen in the PVC superphylum

  2016cites this paper
• Toward Multiscale Models of Cyanobacterial Growth: A Modular Approach

  2016cites this paper
• An open-hardware platform for optogenetics and photobiology

  2016cites this paper