Sex or no sex? Group I introns and independent marker genes reveal the existence of three sexual but reproductively isolated biospecies in Trichia varia (Myxomycetes)

No abstract is available for this paper.

• Publication year

  2015

• Venue

  Organisms Diversity & Evolution

• Publication date

  2015-08-11

• Fields of study

  Biology

• Identifiers
  DOI 10.1007/s13127-015-0230-x
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Plos One

  2015cited by this paper
• Nucleic Acids Research

  2015cited by this paper
• Bacterial group I introns: mobile RNA catalysts

  2014cited by this paper
• MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

  2013influential reference
• Using environmental niche models to test the ‘everything is everywhere’ hypothesis for Badhamia

  2013cited by this paper
• Two-Gene Phylogeny of Bright-Spored Myxomycetes (Slime Moulds, Superorder Lucisporidia)

  2013influential reference
• Nuclear group I introns in self-splicing and beyond

  2013cited by this paper
• Multiple Group I Introns in the Small-Subunit rDNA of Botryosphaeria dothidea: Implication for Intraspecific Genetic Diversity

  2013cited by this paper
• Diversity of nivicolous myxomycetes of the Teberda State Biosphere Reserve (Northwestern Caucasus, Russia)

  2013cited by this paper
• Physarum polycephalum mutants in the photocontrol of sporulation display altered patterns in the correlated expression of developmentally regulated genes

  2013cited by this paper
• Description, culture and phylogenetic position of a new xerotolerant species of Physarum

  2013cited by this paper
• The nuclear reproductive cycle in the myxomycetes: a review

  2013influential reference
• CDD: conserved domains and protein three-dimensional structure

  2012cited by this paper
• Homing endonucleases: DNA scissors on a mission.

  2012cited by this paper
• Diversity of nivicolous myxomycetes of the Teberda State Biosphere Reserve (Northwestern Caucasus, Russia)

  2012cited by this paper
• Polyphyletic origin of the genus Physarum (Physarales, Myxomycetes) revealed by nuclear rDNA mini-chromosome analysis and group I intron synapomorphy

  2012influential reference
• CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

  2012cited by this paper
• A contemporary evaluation of the acrasids (Acrasidae, Heterolobosea, Excavata).

  2012cited by this paper
• 18S rDNA Phylogeny of Lamproderma and Allied Genera (Stemonitales, Myxomycetes, Amoebozoa)

  2012influential reference
• MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

  2012cited by this paper
• Plasmodial incompatibility in the myxomycetes: a review

  2012cited by this paper
• The Revised Classification of Eukaryotes

  2012cited by this paper
• Comprehensive Phylogenetic Reconstruction of Amoebozoa Based on Concatenated Analyses of SSU-rDNA and Actin Genes

  2011influential reference
• MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

  2011influential reference
• Genetic Structure of Two Protist Species (Myxogastria, Amoebozoa) Suggests Asexual Reproduction in Sexual Amoebae

  2011influential reference
• Commentary on the chastity of amoebae: re-evaluating evidence for sex in amoeboid organisms

  2011influential reference
• Principles and Protocols for Genetical Study of Myxomycete Reproductive Systems and Plasmodial Coalescence

  2011cited by this paper
• Learning to live together: mutualism between self-splicing introns and their hosts

  2011cited by this paper
• A revised classification of naked lobose amoebae (Amoebozoa: lobosa).

  2011cited by this paper
• Maternal inheritance of mitochondria: multipolarity, multiallelism and hierarchical transmission of mitochondrial DNA in the true slime mold Physarum polycephalum

  2010influential reference
• Deep phylogeny and evolution of slime moulds (mycetozoa).

  2010cited by this paper
• RNA editing of 10 Didymium iridis mitochondrial genes and comparison with the homologous genes in Physarum polycephalum.

  2010cited by this paper
• Ribosomal RNA genes in eukaryotic microorganisms: witnesses of phylogeny?

  2010cited by this paper
• Reproductive systems in the myxomycetes : a review

  2010influential reference
• Variation, Sex, and Social Cooperation: Molecular Population Genetics of the Social Amoeba Dictyostelium discoideum

  2010cited by this paper
• Group I introns: Moving in new directions

  2009cited by this paper
• A habitat colonisation model for spore-dispersed organisms: does it work with eumycetozoans?

  2008cited by this paper
• The Myxomycetes

  2008cited by this paper
• Methods of agar culture of myxomycetes: an overview

  2008cited by this paper
• Evolution of dark-spored Myxomycetes (slime-molds): molecules versus morphology.

  2008influential reference
• Myxomycete diversity and distribution from the fossil record to the present

  2008cited by this paper
• MICROSATELLITE GENOTYPING OF SINGLE CELLS OF THE DINOFLAGELLATE SPECIES LINGULODINIUM POLYEDRUM (DINOPHYCEAE): A NOVEL APPROACH FOR MARINE MICROBIAL POPULATION GENETIC STUDIES 1

  2008cited by this paper
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  2008cited by this paper
• Group I introns and associated homing endonuclease genes reveals a clinal structure for Porphyra spiralis var. amplifolia (Bangiales, Rhodophyta) along the Eastern coast of South America

  2008cited by this paper
• TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops

  2008cited by this paper
• Obligatory group I introns with unusual features at positions 1949 and 2449 in nuclear LSU rDNA of Didymiaceae myxomycetes.

  2007cited by this paper
• GISSD: Group I Intron Sequence and Structure Database

  2007cited by this paper
• The Molecular Evolution and Structural Organization of Group I Introns at Position 1389 in Nuclear Small Subunit rDNA of Myxomycetes

  2007cited by this paper
• Application of phylogenetic networks in evolutionary studies.

  2006cited by this paper
• The Species Problem in the Myxomycetes

  2006cited by this paper
• Inteins, introns, and homing endonucleases: recent revelations about the life cycle of parasitic genetic elements

  2006cited by this paper
• A Simple and Robust Statistical Test for Detecting the Presence of Recombination

  2006cited by this paper
• Invasion and Persistence of a Selfish Gene in the Cnidaria

  2006cited by this paper
• Higher‐Order Phylogeny of Plasmodial Slime Molds (Myxogastria) Based on Elongation Factor 1‐A and Small Subunit rRNA Gene Sequences

  2005influential reference
• Phylogenetic analyses suggest reverse splicing spread of group I introns in fungal ribosomal DNA

  2005cited by this paper
• Predicting the secondary structures and tertiary interactions of 211 group I introns in IE subgroup

  2005influential reference
• The recent transfer of a homing endonuclease gene

  2005influential reference
• The natural history of group I introns.

  2005influential reference
• The evolution of homing endonuclease genes and group I introns in nuclear rDNA.

  2004cited by this paper
• Twelve Group I introns in the same pre-rRNA transcript of the myxomycete Fuligo septica: RNA processing and evolution.

  2004cited by this paper
• MUSCLE: multiple sequence alignment with high accuracy and high throughput.

  2004influential reference
• The Ubiquity of Small Species: Patterns of Local and Global Diversity

  2004cited by this paper
• Prospects for inferring very large phylogenies by using the neighbor-joining method.

  2004influential reference
• Polymorphisms and intronic structures in the 18S subunit ribosomal RNA gene of the fungi Scytalidium dimidiatum and Scytalidium hyalinum. Evidence of an IC1 intron with an His-Cys endonuclease gene.

  2004cited by this paper
• A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

  2003influential reference
• The Molecular Evolution and Structural Organization of Self-Splicing Group I Introns at Position 516 in Nuclear SSU rDNA of Myxomycetes

  2003cited by this paper
• MrBayes 3: Bayesian phylogenetic inference under mixed models

  2003influential reference
• Biosystematics of the myxomycete Arcyria cinerea

  2002cited by this paper
• Group I Introns from Zygomycota: Evolutionary Implications for the Fungal IC1 Intron Subgroup

  2002cited by this paper
• Group-I intron containing a putative homing endonuclease gene in the small subunit ribosomal DNA of Beauveria bassiana IFO 31676.

  2002cited by this paper
• Characterization of the self-splicing products of two complex Naegleria LSU rDNA group I introns containing homing endonuclease genes.

  2002cited by this paper
• Adaptation for horizontal transfer in a homing endonuclease.

  2002cited by this paper
• The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

  2002cited by this paper
• Group I intron lateral transfer between red and brown algal ribosomal RNA

  2001cited by this paper
• Indices of multilocus linkage disequilibrium

  2001influential reference
• Evolutionary dynamics of multiple group I introns in nuclear ribosomal RNA genes of endoparasitic fungi of the genus Cordyceps.

  2001cited by this paper
• Outcrossed sex allows a selfish gene to invade yeast populations

  2001cited by this paper
• Molecular Biology and Evolution

  2001cited by this paper
• A structural and phylogenetic analysis of the group IC1 introns in the order Bangiales (Rhodophyta).

  2001cited by this paper
• Evolution of four types of RNA editing in myxomycetes.

  2000cited by this paper
• LIAN 3.0: detecting linkage disequilibrium in multilocus data

  2000influential reference
• Complex group-I introns in nuclear SSU rDNA of red and green algae: evidence of homing-endonuclease pseudogenes in the Bangiophyceae

  1999cited by this paper
• I-NjaI, a nuclear intron-encoded homing endonuclease from Naegleria, generates a pentanucleotide 3' cleavage-overhang within a 19 base-pair partially symmetric DNA recognition site.

  1999cited by this paper
• In vivo expression of the nucleolar group I intron‐encoded I‐DirI homing endonuclease involves the removal of a spliceosomal intron

  1999cited by this paper
• Recurrent invasion and extinction of a selfish gene.

  1999cited by this paper
• DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI

  1998influential reference
• In vivo mobility of a group I twintron in nuclear ribosomal DNA of the myxomycete Didymium iridis

  1997influential reference
• Ceratiomyxales, Echinosteliales, Liceales, Trichiales

  1997cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997influential reference
• Nuclear-encoded rDNA group I introns: origin and phylogenetic relationships of insertion site lineages in the green algae.

  1996cited by this paper
• Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi.

  1996cited by this paper
• Myxomycete reproductive systems: additional information

  1995cited by this paper
• Die Myxomyceten Deutschlands und des angrenzenden Alpenraumes unter besonderer Beriicksichtigung Österreichs

  1994cited by this paper
• A mobile group I intron from Physarum polycephalum can insert itself and induce point mutations in the nuclear ribosomal DNA of saccharomyces cerevisiae

  1993cited by this paper
• Didymium Iridis Reproductive Systems: Additions and Meiotic Drive

  1993cited by this paper
• A family of nuclear homing endonucleases.

  1993influential reference
• Small subunit rDNA variation in a population of lichen fungi due to optional group-I introns.

  1993cited by this paper
• Substitutional and insertional RNA editing of the cytochrome c oxidase subunit 1 mRNA of Physarum polycephalum.

  1993cited by this paper
• Introns as mobile genetic elements.

  1993cited by this paper
• Structure and evolution of myxomycete nuclear group I introns: a model for horizontal transfer by intron homing

  1992cited by this paper

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• A new species of Diacheopsis (Myxomycetes) and a new habitat for myxomycetes

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• New species, new records, and common species of Diderma (Physarales, Didymiaceae) from China

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• A three-gene phylogeny supports taxonomic rearrangements in the family Didymiaceae (Myxomycetes)

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  2022cites this paper
• High Environmentally Induced Plasticity in Spore Size and Numbers of Nuclei per Spore in Physarum albescens (Myxomycetes).

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  2019cites this paper
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  2019cites this paper
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