Ecology and characteristics of methanogenic archaea in animals and humans

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Critical reviews in microbiology

• Publication date

  2014-05-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.3109/1040841X.2013.763220PMID 23425063
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Gastrointestinal anatomy and physiology

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• Archaea

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• Gastrointestinal Anatomy and Physiology

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• The Rumen and Its Microbes

  2013cited by this paper
• Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces.

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  2012cited by this paper
• Structures of free-living and protozoa-associated methanogen communities in the bovine rumen differ according to comparative analysis of 16S rRNA and mcrA genes.

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• Contribution of lateral gene transfer to the gene repertoire of a gut-adapted methanogen.

  2012influential reference
• Obesity-associated gut microbiota is enriched in Lactobacillus reuteri and depleted in Bifidobacterium animalis and Methanobrevibacter smithii

  2011cited by this paper
• Archaea — timeline of the third domain

  2011influential reference
• Cesarean versus vaginal delivery: long-term infant outcomes and the hygiene hypothesis.

  2011cited by this paper
• Impact of High-Concentrate Feeding and Low Ruminal pH on Methanogens and Protozoa in the Rumen of Dairy Cows

  2011influential reference
• Evaluation of stool microbiota signatures in two cohorts of Asian (Singapore and Indonesia) newborns at risk of atopy

  2011cited by this paper
• The developing intestinal microbiome and its relationship to health and disease in the neonate

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• Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins

  2011influential reference
• Abundance and diversity of mucosa-associated hydrogenotrophic microbes in the healthy human colon

  2011cited by this paper
• Techniques for cultivating methanogens.

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• Microbe–Microbe Interactions

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• Prescreening of microbial populations for the assessment of sequencing potential.

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• Differences in the Rumen Methanogen Populations of Lactating Jersey and Holstein Dairy Cows under the Same Diet Regimen

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• Succession of microbial consortia in the developing infant gut microbiome

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• Antigenic group II chaperonin in Methanobrevibacter oralis may cross-react with human chaperonin CCT.

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• Microbiota and SCFA in Lean and Overweight Healthy Subjects

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• The Role of Methane in Intestinal Diseases

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• Molecular profiling and identification of methanogenic archaeal species from rabbit caecum.

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• Dilution rates influence ammonia‐assimilating enzyme activities and cell parameters of Selenomonas ruminantium strain D in continuous (glucose‐limited) culture

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• Molecular evaluation of the human gut methanogenic archaeal microbiota reveals an age-associated increase of the diversity.

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• Quantitative Fluorescence In Situ Hybridization of Microbial Communities in the Rumens of Cattle Fed Different Diets

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• Dominance of Methanomicrobium phylotype in methanogen population present in Murrah buffaloes (Bubalus bubalis)

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  2009influential reference
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• Influence of Maternal Bifidobacteria on the Establishment of Bifidobacteria Colonizing the Gut in Infants

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• Quantitative analysis of cellulose degradation and growth of cellulolytic bacteria in the rumen.

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  2009influential reference
• Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies

  2009influential reference
• mcrA-Targeted Real-Time Quantitative PCR Method To Examine Methanogen Communities

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  2008influential reference
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  2008cited by this paper
• Volatilisation of metals and metalloids: an inherent feature of methanoarchaea?

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• Quantitative Analysis of Three Hydrogenotrophic Microbial Groups, Methanogenic Archaea, Sulfate-Reducing Bacteria, and Acetogenic Bacteria, within Plaque Biofilms Associated with Human Periodontal Disease

  2008influential reference
• Evolution of Mammals and Their Gut Microbes

  2008influential reference
• Structure of the Archaeal Community of the Rumen

  2008cited by this paper
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• Modelling digestive constraints in non-ruminant and ruminant foregut-fermenting mammals.

  2008cited by this paper
• Worlds within worlds: evolution of the vertebrate gut microbiota

  2008influential reference
• Evolution of Acetoclastic Methanogenesis in Methanosarcina via Horizontal Gene Transfer from Cellulolytic Clostridia

  2007cited by this paper
• Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut

  2007influential reference
• Methanobrevibacter millerae sp. nov. and Methanobrevibacter olleyae sp. nov., methanogens from the ovine and bovine rumen that can utilize formate for growth.

  2007influential reference
• Mode of Delivery – Effects on Gut Microbiota and Humoral Immunity

  2007cited by this paper
• Binding of Human Plasminogen to Bifidobacterium

  2007cited by this paper
• Manual of environmental microbiology.

  2007cited by this paper
• Phylogenetic and genomic analysis

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• Detection of methane and quantification of methanogenic archaea in faeces from young broiler chickens using real‐time PCR

  2007influential reference
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• The distribution and diversity of Euryarchaeota in termite guts.

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• Phylogenetic analysis of bacterial and archaeal species in symptomatic and asymptomatic endodontic infections.

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• Adaptation and Response of Bifidobacterium animalis subsp. lactis to Bile: a Proteomic and Physiological Approach

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  2006cited by this paper
• A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism.

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• Bile salt biotransformations by human intestinal bacteria Published, JLR Papers in Press, November 18, 2005.

  2006influential reference
• Visualization of mcr mRNA in a methanogen by fluorescence in situ hybridization with an oligonucleotide probe and two-pass tyramide signal amplification (two-pass TSA-FISH).

  2006cited by this paper
• An obesity-associated gut microbiome with increased capacity for energy harvest

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• Effects of nitro compounds and feedstuffs on in vitro methane production in chicken cecal contents and rumen fluid.

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• Application of Recent DNA/RNA-based Techniques in Rumen Ecology

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• Methyl-coenzyme M reductase genes: unique functional markers for methanogenic and anaerobic methane-oxidizing Archaea.

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• Quantitative determination of methanogenic bacteria in the feces of different mammals

  2005influential reference
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  2015cites this paper
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  2014cites this paper
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• [A research overview of methanogens].

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  2014cites this paper
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