Prediction of N-terminal protein sorting signals.

No abstract is available for this paper.

• Publication year

  1997

• Venue

  Current Opinion in Structural Biology

• Publication date

  1997-06-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1016/S0959-440X(97)80057-7PMID 9204282
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.

  1997cited by this paper
• Protein transport across the eukaryotic endoplasmic reticulum and bacterial inner membranes.

  1996cited by this paper
• Defining a similarity threshold for a functional protein sequence pattern: The signal peptide cleavage site

  1996cited by this paper
• Computational method to predict mitochondrially imported proteins and their targeting sequences.

  1996cited by this paper
• Signal sequences: the same yet different.

  1996cited by this paper
• Topogenesis of inner membrane proteins of mitochondria.

  1996cited by this paper
• The importance of larger data sets for protein secondary structure prediction with neural networks

  1996cited by this paper
• Limitations to in vivo import of hydrophobic proteins into yeast mitochondria. The case of a cytoplasmically synthesized apocytochrome b.

  1995cited by this paper
• MitoProt, a Macintosh application for studying mitochondrial proteins

  1995cited by this paper
• Protein transport via amino-terminal targeting sequences: common themes in diverse systems.

  1995cited by this paper
• Peptide design in machina: development of artificial mitochondrial protein precursor cleavage sites by simulated molecular evolution.

  1995cited by this paper
• Homologous nuclear-encoded mitochondrial and cytosolic isoproteins. A review of structure, biosynthesis and genes.

  1995cited by this paper
• The rational design of amino acid sequences by artificial neural networks and simulated molecular evolution: de novo design of an idealized leader peptidase cleavage site.

  1994cited by this paper
• Mitochondrial protein import: mechanisms, components and energetics.

  1994cited by this paper
• Targeting of proteins into and across the thylakoid membrane — a multitude of mechanisms

  1994cited by this paper
• Neural Networks for Pattern Recognition

  1993cited by this paper
• Analysis of cleavage-site patterns in protein precursor sequences with a perceptron-type neural network.

  1993cited by this paper
• Development of artificial neural filters for pattern recognition in protein sequences

  1993cited by this paper
• Artificial neural networks for pattern recognition in biochemical sequences.

  1993cited by this paper
• Signal analysis of protein targeting sequences

  1993cited by this paper
• Prediction of structural and functional features of protein and nucleic acid sequences by artificial neural networks.

  1992cited by this paper
• A knowledge base for predicting protein localization sites in eukaryotic cells

  1992cited by this paper
• Transport of proteins into chloroplasts. The thylakoidal processing peptidase is a signal-type peptidase with stringent substrate requirements at the -3 and -1 positions.

  1991cited by this paper
• Expert system for predicting protein localization sites in gram‐negative bacteria

  1991cited by this paper
• Improving signal peptide prediction accuracy by simulated neural network

  1991cited by this paper
• Identification of a new motif on nucleic acid sequence data using Kohonen's self-organizing map

  1991cited by this paper
• Cleavage-site motifs in mitochondrial targeting peptides.

  1990cited by this paper
• Prediction of leader peptide cleavage sites for polypeptides of the thylakoid lumen.

  1990cited by this paper
• The signal peptide.

  1990cited by this paper
• A conserved cleavage‐site motif in chloroplast transit peptides

  1990cited by this paper
• The signal peptide.

  1990cited by this paper
• Domain structure of mitochondrial and chloroplast targeting peptides.

  1989cited by this paper
• SIGSEQ: a computer program for predicting signal sequence cleavage sites

  1988cited by this paper
• Computer-assisted predictions of signal peptidase processing sites.

  1987cited by this paper
• Mitochondrial targeting sequences may form amphiphilic helices.

  1986cited by this paper
• On the predictive recognition of signal peptide sequences.

  1985cited by this paper
• A new method for predkting signal sequence cleavage sites

  year unknowncited by this paper

• Understanding protein import in diverse non-green plastids

  2023cites this paper
• The Screening of the Protective Antigens of Aeromonas hydrophila Using the Reverse Vaccinology Approach: Potential Candidates for Subunit Vaccine Development

  2023cites this paper
• Analysis of nested alternate open reading frames and their encoded proteins

  2022cites this paper
• The ten amino acids of the oxygen-evolving enhancer of tobacco is sufficient as the peptide residues for protein transport to the chloroplast thylakoid

  2021cites this paper
• Protein Secretion

  2020cites this paper
• CLASSIFICATION OF SIGNALING PROTEINS USING COMPUTER-BASED METHODS

  2020cites this paper
• MOLECULAR MARKERS: APPLICATION IN TREE IMPROVEMENT PROGRAMMES

  2020cites this paper
• Signal-3L 3.0: Improving Signal Peptide Prediction through Combining Attention Deep Learning with Window-Based Scoring

  2020cites this paper
• Molecular Evolution and Functional Analysis of Rubredoxin-Like Proteins in Plants

  2019cites this paper
• Functional characterization of chloroplast transit peptide in the small subunit of Rubisco in maize.

  2019cites this paper
• Enzymatic modification by point mutation and functional analysis of an omega-6 fatty acid desaturase from Arctic Chlamydomonas sp.

  2017cites this paper
• Protein Subcellular Location: The Gap Between Prediction and Experimentation

  2016cites this paper
• Characterisation of the yeast RNA helicase Prp43

  2016cites this paper
• A methodological review of data mining techniques in predictive medicine: An application in hemodynamic prediction for abdominal aortic aneurysm disease

  2014cites this paper
• Prediction of Signal Peptide Cleavage Sites with Subsite‐Coupled and Template Matching Fusion Algorithm

  2014cites this paper
• Chapter 323 – Chloroplast Stromal Processing Peptidase

  2013cites this paper
• Isolation of a novel gene from Photobacterium damselae subsp. piscicida and analysis of the recombinant antigen as promising vaccine candidate.

  2013cites this paper
• Predicting Protein N-Terminal Signal Peptides Using Position-Specific Amino Acid Propensities and Conditional Random Fields

  2013cites this paper
• TMBB-DB: a transmembrane β-barrel proteome database

  2012cites this paper
• Mitochondrial Localization of ABC Transporter ABCG2 and Its Function in 5-Aminolevulinic Acid-Mediated Protoporphyrin IX Accumulation

  2012cites this paper
• The role of ABCG2 and ABCB6 in porphyrin metabolism and cell survival.

  2011cites this paper
• Fundamental gap in fundamental biology

  2011cites this paper
• Multitask Learning for Protein Subcellular Location Prediction

  2011cites this paper
• The Apicoplast: An ancient algal endosymbiont of Apicomplexa

  2010cites this paper
• Bioinformatics predictions of localization and targeting.

  2010cites this paper
• Caracterização molecular e bioquímica da prolina desidrogenase de Trypanosoma cruzi, um possível alvo

  2010cites this paper
• Prediction of signal peptide cleavage sites with template matching fusion algorithm

  2010cites this paper
• Semi-supervised protein subcellular localization

  2009cites this paper
• Prediction of protein function and functional sites from protein sequences

  2009cites this paper
• Expression and characterization of the periplasmic cobalamin-binding protein of Photobacterium damselae subsp. piscicida.

  2009cites this paper
• The Secretome of the Extremophilic Acidithiobacillus Ferrooxidans ATCC 23270

  2009cites this paper
• Pattern analysis for the prediction of fungal pro-peptide cleavage sites

  2009cites this paper
• Emerging Infectious Diseases

  2009cites this paper
• The mitochondrial targeting sequence tilts the balance between mitochondrial and cytosolic dual localization

  2008influential citation
• Developing Antibacterial Vaccines in Genomics and Proteomics Era

  2008cites this paper
• Supervised learning method for the prediction of subcellular localization of proteins using amino acid and amino acid pair composition

  2008influential citation
• Assembling an arsenal, the scorpion way

  2008cites this paper
• Protein Folding in the Endoplasmic Reticulum

  2008cites this paper
• Using a new alignment kernel function to identify secretory proteins.

  2007cites this paper
• The role of transporters in cellular heme and porphyrin homeostasis.

  2007cites this paper
• Pattern Analysis for the Prediction of Eukoryatic Pro-peptide Cleavage Sites ?

  2007cites this paper
• Chapter 13 Datamining : Discovering Information From BioData

  2007cites this paper
• A suite of parallel vectors for baculovirus expression.

  2006cites this paper
• Production Editors

  2006cites this paper
• Molecular evolutionary studies on the chlorarachniophyte : Bigelowiella natans

  2006cites this paper
• Functional grouping based on signatures in protein termini

  2006cites this paper
• Microsporidian mitosomes retain elements of the general mitochondrial targeting system

  2006cites this paper
• Identification and cornification-related gene expression of canine keratinocyte differentiation-associated protein, Kdap.

  2006cites this paper
• Protein import into mitochondria: origins and functions today (Review)

  2005cites this paper
• Searching for hypothetical proteins: theory and practice based upon original data and literature.

  2005cites this paper
• Molecular cloning and analysis of a cotton gene cluster of two genes and two pseudogenes for the PR5 protein osmotin

  2005cites this paper
• Using string kernel to predict signal peptide cleavage site based on subsite coupling model

  2005cites this paper
• Characterization of cDNA and the genomic sequence encoding canine neural-cell adhesion molecule, CD56/N-CAM.

  2005influential citation
• Using string kernel to predict signal peptide cleavage site based on subsite coupling model

  2005cites this paper
• Untersuchungen zur Translokation und Insertion mitochondrialer Proteine über den Tim17-Tim23-Komplex

  2005cites this paper
• Information theory in prediction of cleavage sites of signal peptides.

  2005cites this paper
• Unique molecular architecture of egg case silk protein in a spider, Nephila clavata.

  2005cites this paper
• Structure and function of SecA, the preprotein translocase nanomotor.

  2004cites this paper
• Analysis of Curated and Predicted Plastid Subproteomes of Arabidopsis. Subcellular Compartmentalization Leads to Distinctive Proteome Properties1[w]

  2004cites this paper
• Advances in the prediction of protein targeting signals

  2004cites this paper
• Predicting subcellular localization of proteins in a hybridization space

  2004cites this paper
• PROTEIN SUBCELLULAR LOCALIZATION PREDICTION

  2004cites this paper
• Plastid-Targeting Peptides from the Chlorarachniophyte Bigelowiella natans

  2004cites this paper
• Prediction of protein subcellular locations by GO-FunD-PseAA predictor.

  2004cites this paper
• Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudo‐amino acid composition

  2004cites this paper
• Screening for N‐glycosylated proteins by liquid chromatography mass spectrometry

  2004cites this paper
• Annotating proteins from endoplasmic reticulum and Golgi apparatus in eukaryotic proteomes

  2004cites this paper
• Chloroplast Stromal Processing Peptidase

  2004cites this paper
• Support vector machines for prediction of protein signal sequences and their cleavage sites.

  2003cites this paper
• Prediction and classification of protein subcellular location—sequence‐order effect and pseudo amino acid composition

  2003cites this paper
• Folding rate prediction based on neural network model

  2003cites this paper
• ST7 is a novel low-density lipoprotein receptor-related protein (LRP) with a cytoplasmic tail that interacts with proteins related to signal transduction pathways.

  2003cites this paper
• Mutational analysis of predicted interactions between the catalytic and P domains of prohormone convertase 3 (PC3/PC1)

  2003cites this paper
• Data Mining Tools for Biological Sequences

  2003cites this paper
• 1 The Use of Emerging Patterns in the Analysis of Gene Expression Profiles for the Diagnosis and Understanding of Diseases

  2003cites this paper
• A new hybrid approach to predict subcellular localization of proteins by incorporating gene ontology.

  2003cites this paper
• Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition.

  2003cites this paper
• Structural Elucidation of the Specificity of the Antibacterial Agent Triclosan for Malarial Enoyl Acyl Carrier Protein Reductase*

  2002cites this paper
• An Overview on Predicting the Subcellular Location of a Protein

  2002cites this paper
• Formate dehydrogenase in Arabidopsis thaliana: overexpression and subcellular localization in leaves

  2002cites this paper
• Protein Targeting, Intracellular

  2002cites this paper
• Determinants for Removal and Degradation of Transit Peptides of Chloroplast Precursor Proteins*

  2002cites this paper
• Glucosylation Activity and Complex Formation of Two Classes of Reversibly Glycosylated Polypeptides1

  2002cites this paper
• Functional diversity of protein C-termini: more than zipcoding?

  2002cites this paper
• Sequence conserved for subcellular localization

  2002cites this paper
• Prediction of protein signal sequences.

  2002cites this paper
• Protein transport into secondary plastids and the evolution of primary and secondary plastids.

  2002cites this paper
• Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases.

  2001cites this paper
• Identification and characterization of KLK14, a novel kallikrein serine protease gene located on human chromosome 19q13.4 and expressed in prostate and skeletal muscle.

  2001cites this paper
• The paradox of plastid transit peptides: conservation of function despite divergence in primary structure.

  2001cites this paper
• Prediction of signal peptides using scaled window.

  2001cites this paper
• A Signal Sequence Is Sufficient for Green Fluorescent Protein to Be Routed to Regulated Secretory Granules* *This work was supported by NIH Grants DK-32948, DA-00266 (to R.E.M.), and NS-35891 (to R.B.E.).

  2001cites this paper
• Bioinformatics: use in bacterial vaccine discovery.

  2001cites this paper
• Subunit II of Cytochrome c Oxidase in Chlamydomonad Algae Is a Heterodimer Encoded by Two Independent Nuclear Genes*

  2001cites this paper
• A reassessment of the translation initiation codon in vertebrates.

  2001cites this paper
• Review: prediction of in vivo fates of proteins in the era of genomics and proteomics.

  2001cites this paper
• Antibacterial vaccine design using genomics and proteomics.

  2001cites this paper
• Analysis and prediction of mitochondrial targeting peptides.

  2001cites this paper
• Prediction of subcellular localizations using amino acid composition and order.

  2001cites this paper
• Preparing a human membrane and secreted protein-enriched cDNA library using PCR primers derived from a genomic database.

  2001cites this paper