pH-Dependent Expression of Periplasmic Proteins and Amino Acid Catabolism in Escherichia coli

No abstract is available for this paper.

• Publication year

  2002

• Venue

  Journal of Bacteriology

• Publication date

  2002-08-01

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1128/JB.184.15.4246-4258.2002PMID 12107143PMCID PMC135203
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A pleîotropic acid phosphatase-deficient mutant of Escherichia coli shows premature termination in the dsbA gene. Use of dsbA :: phoA furions to localize a structurally important domain in DsbA

  2004cited by this paper
• Regulation of a-Ketoglutarate Dehydrogenase Formation in Escherichia coZi*

  2003cited by this paper
• Functional Characterization and Regulation of gadX, a Gene Encoding an AraC/XylS-Like Transcriptional Activator of the Escherichia coli Glutamic Acid Decarboxylase System

  2002cited by this paper
• Proteomic analysis of pH-dependent stress responses in Escherichia coli and Helicobacter pylori using two-dimensional gel electrophoresis.

  2002cited by this paper
• Indole Can Act as an Extracellular Signal inEscherichia coli

  2001cited by this paper
• External-pH-Dependent Expression of the Maltose Regulon and ompF Gene in Escherichia coli Is Affected by the Level of Glycerol Kinase, Encoded byglpK

  2001cited by this paper
• Global Analysis of Escherichia coli Gene Expression during the Acetate-Induced Acid Tolerance Response

  2001cited by this paper
• Escherichia coli acid resistance: cAMP receptor protein and a 20 bp cis-acting sequence control pH and stationary phase expression of the gadA and gadBC glutamate decarboxylase genes.

  2001cited by this paper
• The LuxS family of bacterial autoinducers: biosynthesis of a novel quorum‐sensing signal molecule

  2001cited by this paper
• Genome-Wide Transcriptional Profiling of theEscherichia coli Responses to Superoxide Stress and Sodium Salicylate

  2001cited by this paper
• Acetate and Formate Stress: Opposite Responses in the Proteome of Escherichia coli

  2001influential reference
• An activator of glutamate decarboxylase genes regulates the expression of enteropathogenic Escherichia coli virulence genes through control of the plasmid‐encoded regulator, Per

  2001cited by this paper
• Fur Positive Regulation of Iron Superoxide Dismutase in Escherichia coli: Functional Analysis of thesodB Promoter

  2000influential reference
• Involvement of Carbon Source and Acetyl Phosphate in the External-pH-Dependent Expression of Porin Genes inEscherichia coli

  2000influential reference
• LuxR- and Acyl-Homoserine-Lactone-Controlled Non-luxGenes Define a Quorum-Sensing Regulon in Vibrio fischeri

  2000cited by this paper
• Expression of Outer Membrane Proteins inEscherichia coli Growing at Acid pH

  2000cited by this paper
• Mutations Enhancing Amino Acid Catabolism Confer a Growth Advantage in Stationary Phase

  1999cited by this paper
• Acid- and Base-Induced Proteins during Aerobic and Anaerobic Growth of Escherichia coli Revealed by Two-Dimensional Gel Electrophoresis

  1999influential reference
• The structure of the outer membrane protein OmpX from Escherichia coli reveals possible mechanisms of virulence.

  1999influential reference
• Escherichia coli genes regulated by cell-to-cell signaling.

  1999cited by this paper
• Control of Acid Resistance inEscherichia coli

  1999cited by this paper
• Quorum sensing in Escherichia coli, Salmonella typhimurium, and Vibrio harveyi: a new family of genes responsible for autoinducer production.

  1999cited by this paper
• Role of Iron and Superoxide for Generation of Hydroxyl Radical, Oxidative DNA Lesions, and Mutagenesis in Escherichia coli *

  1999influential reference
• Role of the Escherichia coli SurA Protein in Stationary-Phase Survival

  1998cited by this paper
• Acid-Sensitive Enteric Pathogens Are Protected from Killing under Extremely Acidic Conditions of pH 2.5 when They Are Inoculated onto Certain Solid Food Sources

  1998cited by this paper
• The effects of fermentation acids on bacterial growth.

  1998cited by this paper
• Arginine Catabolism and the Arginine Succinyltransferase Pathway in Escherichia coli

  1998influential reference
• Downregulation of Escherichia coli yfiD expression by FNR occupying a site at −93.5 involves the AR1‐containing face of FNR

  1998cited by this paper
• The Importance of Protein Co- and Post-Translational Modifications in Proteome Projects

  1997cited by this paper
• Proteome Research: New Frontiers in Functional Genomics

  1997cited by this paper
• Proteins induced in Escherichia coli by benzoic acid

  1997cited by this paper
• From acids to osmZ: multiple factors influence synthesis of the OmpF and OmpC porins in Escherichia coli

  1996cited by this paper
• A glutamate-dependent acid resistance gene in Escherichia coli

  1996cited by this paper
• Mechanisms of acid resistance in enterohemorrhagic Escherichia coli

  1996cited by this paper
• Mecillinam resistance in Escherichia coli is conferred by loss of a second activity of the AroK protein

  1996cited by this paper
• Identification of σs‐dependent genes associated with the stationary‐phase acid‐resistance phenotype of Shigella flexneri

  1996cited by this paper
• Studies on the Synthesis of the Fe-S Cluster of Dihydroxy-acid Dehydratase in Escherichia coli Crude Extract

  1996cited by this paper
• A third periplasmic transport system for l‐arginine in Escherichia coli: molecular characterization of the artPIQMJ genes, arginine binding and transport

  1995cited by this paper
• Thioredoxin-linked "Thiol Peroxidase" from Periplasmic Space of Escherichia coli(*)

  1995influential reference
• Lethal oxidative damage and mutagenesis are generated by iron in delta fur mutants of Escherichia coli: protective role of superoxide dismutase

  1995cited by this paper
• Roles of LysP and CadC in mediating the lysine requirement for acid induction of the Escherichia coli cad operon

  1994cited by this paper
• Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH

  1994cited by this paper
• Dual regulation of inaA by the multiple antibiotic resistance (mar) and superoxide (soxRS) stress response systems of Escherichia coli

  1994cited by this paper
• Analysis of proteins synthesized by Salmonella typhimurium during growth within a host macrophage

  1993cited by this paper
• Bacterial protein disulfide isomerase: efficient catalysis of oxidative protein folding at acidic pH.

  1993influential reference
• Amino acid composition and N-terminal sequence of purified cystine binding protein of Escherichia coli.

  1993cited by this paper
• Nucleotide sequence of the adi gene, which encodes the biodegradative acid-induced arginine decarboxylase of Escherichia coli

  1993cited by this paper
• Influence of pH on bacterial gene expression

  1993cited by this paper
• Decay of ompA mRNA and processing of 9S RNA are immediately affected by shifts in growth rate, but in opposite manners

  1992cited by this paper
• Biosynthesis of riboflavin: cloning, sequencing, and expression of the gene coding for 3,4-dihydroxy-2-butanone 4-phosphate synthase of Escherichia coli

  1992cited by this paper
• Nucleotide sequence of the Escherichia coli cad operon: a system for neutralization of low extracellular pH

  1992cited by this paper
• Expression of a sodium proton antiporter (NhaA) in Escherichia coli is induced by Na+ and Li+ ions.

  1991cited by this paper
• Identification of a central regulator of stationary‐phase gene expression in Escherichia coli

  1991influential reference
• Molecular analysis of two genes of the Escherichia coli gab cluster: nucleotide sequence of the glutamate:succinic semialdehyde transaminase gene (gabT) and characterization of the succinic semialdehyde dehydrogenase gene (gabD)

  1990influential reference
• Adaptive acidification tolerance response of Salmonella typhimurium

  1990cited by this paper
• Identification of the polyamine-induced protein as a periplasmic oligopeptide binding protein.

  1990cited by this paper
• Alkaline induction of a novel gene locus, alx, in Escherichia coli

  1990influential reference
• Control of carbon flux to acetate excretion during growth of Escherichia coli in batch and continuous cultures.

  1989cited by this paper
• A microtiter plate-based system for the semiautomated growth and assay of bacterial cells for beta-galactosidase activity.

  1989cited by this paper
• Escherichia Coli and Salmonella: Typhimurium Cellular and Molecular Biology

  1987cited by this paper
• Ch. 96: pH-Regulated Genes and Survival at Extreme pH

  1987cited by this paper
• Mu d-directed lacZ fusions regulated by low pH in Escherichia coli

  1987influential reference
• Cholera toxin transcriptional activator toxR is a transmembrane DNA binding protein.

  1987cited by this paper
• Rho-dependent transcription termination in the tryptophanase operon leader region of Escherichia coli K-12

  1986cited by this paper
• Escherichia coli intracellular pH, membrane potential, and cell growth

  1984cited by this paper
• Experiments With Gene Fusions

  1984cited by this paper
• Proteins induced by anaerobiosis in Escherichia coli

  1983cited by this paper
• pH homeostasis in Escherichia coli: measurement by 31P nuclear magnetic resonance of methylphosphonate and phosphate.

  1981cited by this paper
• Isolation and properties of Escherichia coli K-12 mutants impaired in the utilization of gamma-aminobutyrate

  1979influential reference
• Metabolism of cyclic adenosine 3',5'-monophosphate and induction of tryptophanase in Escherichia coli

  1975cited by this paper
• Regulation of alpha-ketoglutarate dehydrogenase formation in Escherichia coli.

  1965cited by this paper
• CATALYTIC PROPERTIES OF TRYPTOPHANASE, A MULTIFUNCTIONAL PYRIDOXAL PHOSPHATE ENZYME.

  1964cited by this paper
• The effect of the pH of the medium during growth on the enzymic activities of bacteria (Escherichia coli and Micrococcus lysodeikticus) and the biological significance of the changes produced.

  1942cited by this paper

• The transcriptional regulatory network of the Escherichia coli MG1655 reference strain

  2026cites this paper
• Nanomaterials as electrochemical regulators of bacterial biofilms through the modulation of extracellular electron transport and ion channels.

  2026cites this paper
• pH-modulated soluble expression of alcohol dehydrogenases in Escherichia coli using adaptive laboratory evolution.

  2025cites this paper
• The potential regulatory role of mannose phosphotransferase system EII in alkaline resistance of Enterococcus faecalis

  2025cites this paper
• Genetic characteristics of novel extreme alkaline-inducible promoter located in five prime upstream region of peptidyl-prolyl cis/trans isomerase from Vibrio anguillarum

  2025cites this paper
• PET-FBA: A Lightweight Enzyme Allocation and Thermodynamics-Constrained Flux Analysis Approach to Explore Escherichia coli Metabolic adaptation to Intracellular Acidification.

  2025cites this paper
• Saline-alkaline mediated chemotaxis in the plant growth-promoting rhizobacterium Enterobacter cloacae

  2025cites this paper
• pH-dependent genotypic and phenotypic variability in Oleidesulfovibrio alaskensis G20

  2025cites this paper
• Evolution of pH-sensitive transcription termination in Escherichia coli during adaptation to repeated long-term starvation

  2024cites this paper
• Evolution of pH-sensitive transcription termination during adaptation to repeated long-term starvation

  2024cites this paper
• A riboswitch-controlled TerC family transporter Alx tunes intracellular manganese concentration in Escherichia coli at alkaline pH

  2024cites this paper
• Intracellular Flux Prediction of Recombinant Escherichia coli Producing Gamma-Aminobutyric Acid

  2024cites this paper
• Potential applications of extremophilic bacteria in the bioremediation of extreme environments contaminated with heavy metals.

  2024cites this paper
• Unraveling the Potentials of Extremophiles in Bioextraction of Valuable Metals from Industrial Solid Wastes: An Overview

  2024cites this paper
• Indole production capacity in three different Escherichia coli strains

  2024influential citation
• Genome-wide screen of Escherichia coli Keio mutant line identifies genes related to propolis effect

  2024cites this paper
• Rho-dependent termination enables cellular pH homeostasis

  2024cites this paper
• RNA-seq reveals multifaceted gene expression response to Fab production in Escherichia coli fed-batch processes with particular focus on ribosome stalling

  2024cites this paper
• β-Alanine Metabolism Leads to Increased Extracellular pH during the Heterotrophic Ammonia Oxidation of Pseudomonas putida Y-9

  2023cites this paper
• Cloning, expression and purification of the outer membrane protein N from Gram-negative bacterial strains

  2023cites this paper
• A riboswitch-controlled manganese exporter (Alx) tunes intracellular Mn2+ concentration in E. coli at alkaline pH

  2023cites this paper
• Ribosome profiling reveals the fine-tuned response of Escherichia coli to mild and severe acid stress

  2023cites this paper
• Design of Body Fluid pH Detection Circuit Based on CMOS-ISFET

  2023cites this paper
• House ammonia exposure causes alterations in microbiota, transcriptome, and metabolome of rabbits

  2023cites this paper
• Lactic Acid Resistance and Population Structure of Escherichia coli from Meat Processing Environment

  2022cites this paper
• Metabolic pathways and ΔpH regulation in Escherichia coli during fermentation of glucose and glycerol in the presence of formate at pH 6.5: the role of FhlA transcriptional activator.

  2022cites this paper
• Impact of Azo Dyes and Ibuprofen on the Proteome of Serratia nematodiphila sp. MB307.

  2022cites this paper
• Investigating the Functional Role of Hypothetical Proteins From an Antarctic Bacterium Pseudomonas sp. Lz4W: Emphasis on Identifying Proteins Involved in Cold Adaptation

  2022cites this paper
• The respiratory lipoquinone, menaquinone, functions as an inducer of genes regulated by the Mycobacterium smegmatis repressor MSMEG_2295.

  2022cites this paper
• Na+ riboswitches regulate genes for diverse physiological processes in bacteria

  2022cites this paper
• The urinary microbiome and biological therapeutics: Novel therapies for urinary tract infections.

  2022cites this paper
• Lithium-sensing riboswitch classes regulate expression of bacterial cation transporter genes

  2022cites this paper
• Alkaliphiles for comprehensive utilization of red mud (bauxite residue)—an alkaline waste from the alumina refinery

  2022cites this paper
• Systematic Identification of CpxRA-Regulated Genes and Their Roles in Escherichia coli Stress Response

  2022cites this paper
• Suppression of Thiol-Dependent Antioxidant System and Stress Response in Methicillin-Resistant Staphylococcus aureus by Docosanol: Explication Through Proteome Investigation

  2022cites this paper
• Optimizing a Fed-Batch High-Density Fermentation Process for Medium Chain-Length Poly(3-Hydroxyalkanoates) in Escherichia coli

  2021cites this paper
• Contribution of the Locus of Heat Resistance to Growth and Survival of Escherichia coli at Alkaline pH and at Alkaline pH in the Presence of Chlorine

  2021cites this paper
• A Novel Two-stage pH Control Strategy for the Production of 5-Aminolevulinic Acid Using Recombinant Streptomyces coelicolor

  2021cites this paper
• Sulphate-Reducing Bacteria’s Response to Extreme pH Environments and the Effect of Their Activities on Microbial Corrosion

  2021cites this paper
• Proteomic Analyses of Acinetobacter baumannii Clinical Isolates to Identify Drug Resistant Mechanism

  2021cites this paper
• The role of antibiotics and heavy metals on the development, promotion, and dissemination of antimicrobial resistance in drinking water biofilms.

  2021cites this paper
• Acid resistance of E. coli O157:H7 and O26:H11 exposure to lactic acid revealed by transcriptomic analysis

  2021cites this paper
• New putative therapeutic targets against Serratia marcescens using reverse vaccinology and subtractive genomics

  2021cites this paper
• Antibacterial effect of acidic ionized water on horse wounds bacterial isolates

  2021cites this paper
• A yceI Gene Involves in the Adaptation of Ralstonia solanacearum to Methyl Gallate and Other Stresses

  2021cites this paper
• An inducible AraC that responds to blue light instead of arabinose

  2020cites this paper
• Whole-Cell Production of Patchouli Oil Sesquiterpenes in Escherichia coli: Metabolic Engineering and Fermentation Optimization in Solid–Liquid Phase Partitioning Cultivation

  2020cites this paper
• Transcriptome changes and polymyxin resistance of acid-adapted Escherichia coli O157:H7 ATCC 43889

  2020cites this paper
• Evasion of MAIT cell recognition by the African Salmonella Typhimurium ST313 pathovar that causes invasive disease

  2020cites this paper
• A signal-amplified whole-cell biosensor for sensitive detection of Hg2+ based on Hg2+-enhanced reporter module.

  2020cites this paper
• Visual detection of Hg2+ by manipulation of pyocyanin biosynthesis through the Hg2+-dependent transcriptional activator MerR in microbial cells.

  2020cites this paper
• External pH modulation during the growth of Vibrio tapetis, the aetiological agent of brown ring disease

  2020cites this paper
• Transcriptome profiling of avian pathogenic Escherichia coli and the mouse microvascular endothelial cell line bEnd.3 during interaction

  2020cites this paper
• Optimization of fermentation conditions for the production of recombinant feruloyl esterase from Burkholderia pyrrocinia B1213

  2020cites this paper
• Local and Universal Action: The Paradoxes of Indole Signalling in Bacteria.

  2020cites this paper
• Extremophilic Microorganisms for the Treatment of Toxic Pollutants in the Environment

  2020cites this paper
• Optimization of Fermentation Conditions for Reteplase Expression by Escherichia coli Using Response Surface Methodology

  2019cites this paper
• Recent advances of pH homeostasis mechanisms in Corynebacterium glutamicum

  2019cites this paper
• Application of fermentation process control to increase l‐tryptophan production in Escherichia coli

  2019cites this paper
• African Salmonella Typhimurium sequence type 313 lineage 2 evades MAIT cell recognition by overexpressing RibB

  2019cites this paper
• Susceptibility of Escherichia coli O157:H7 grown at low temperatures to the krypton-chlorine excilamp

  2019cites this paper
• Transcriptional Sequencing Uncovers Survival Mechanisms of Salmonella enterica Serovar Enteritidis in Antibacterial Egg White

  2019cites this paper
• Cystic Fibrosis-Associated Stenotrophomonas maltophilia Strain-Specific Adaptations and Responses to pH

  2019cites this paper
• Proteomic analysis of Rhizobium freirei PRF 81T reveals the key role of central metabolic pathways in acid tolerance

  2019cites this paper
• Modern Approach to Medical Diagnostics - the Use of Separation Techniques in Microorganisms Detection.

  2019cites this paper
• Using machine learning to predict quantitative phenotypes from protein and nucleic acid sequences

  2019cites this paper
• Functional Analysis of preA in Aeromonas veronii TH0426 Reveals a Key Role in the Regulation of Virulence and Resistance to Oxidative Stress

  2019cites this paper
• Elevated pCO2 alters marine heterotrophic bacterial community composition and metabolic potential in response to a pulse of phytoplankton organic matter

  2019cites this paper
• Identification of atpD as an optimal reference gene to explore antibiotic resistance and stress tolerance in Rahnella aquatilis

  2019cites this paper
• Engineered cells for selective detection and remediation of Hg2+ based on transcription factor MerR regulated cell surface displayed systems

  2019cites this paper
• Field Application of Rhizobial Inoculants in Enhancing Faba Bean Production in Acidic Soils: An Innovative Strategy to Improve Crop Productivity

  2019cites this paper
• Aging and recovery of Listeria monocytogenes ScottA

  2018cites this paper
• Analysis of differentially upregulated proteins in ptsHIcrr− and rppH− mutants in Escherichia coli during an adaptive laboratory evolution experiment

  2018cites this paper
• Custom made inclusion bodies: impact of classical process parameters and physiological parameters on inclusion body quality attributes

  2018cites this paper
• Components Sigma B Regulon in Listeria monocytogenes That Contribute to Acid and Salt Tolerance

  2018cites this paper
• Structure–function analysis of manganese exporter proteins across bacteria

  2018cites this paper
• Regulatory RNAs in Virulence and Host-Microbe Interactions

  2018cites this paper
• Cysteine synthase A overexpression in Corynebacterium glutamicum enhances l‐isoleucine production

  2018cites this paper
• 13-Docosenamide release by bacteria in response to glucose during growth—fluorescein quenching and clinical application

  2018cites this paper
• Exoproteome analysis of Bacillus lehensis G1 in ph regulation and starch utilization for screening of signal peptides for cyclodextrin glucanotransferase secretion in Escherichia coli

  2018cites this paper
• A High-Sensitivity Potentiometric 65-nm CMOS ISFET Sensor for Rapid E. coli Screening

  2018cites this paper
• Bicarbonate Alters Bacterial Susceptibility to Antibiotics by Targeting the Proton Motive Force.

  2018cites this paper
• The YebN Leader RNA Acts as a Mn2+ Sensor Required for the Interaction of Xanthomonas oryzae and Rice.

  2018cites this paper
• Investigating the effects of different physical and chemical stress factors on microbial biofilm

  2018cites this paper
• Optimization of Culture Conditions for High Cell-Density Fermentation of Bovine Escherichia coli

  2018influential citation
• Experimental Evolution of Escherichia coli K-12 at High pH and with RpoS Induction

  2018cites this paper
• Fluoride movement into and out of Bacillus spores and growing cells and effects of fluoride accumulation on spore properties

  2018cites this paper
• Secretion of recombinant proteins from E. coli

  2018cites this paper
• Components of Sigma B Regulon in Listeria monocytogenes That Contribute to Acid and Salt Tolerance

  2017cites this paper
• High-level expression of recombinant thermostable β-glucosidase in Escherichia coli by regulating acetic acid.

  2017influential citation
• Recombinant-phospholipase A2 production and architecture of inclusion bodies are affected by pH in Escherichia coli.

  2017cites this paper
• Twitching , swimming , swarming in biofilm forming strains in response to chemical and physical factors

  2017cites this paper
• Quantitative analysis of Shigella flexneri protein expression under acid stress

  2017cites this paper
• Proteogenomics in Aid of Host–Pathogen Interaction Studies: A Bacterial Perspective

  2017cites this paper
• Optimizing hydrolysis and acidogenesis in order to dissolve and recover phosphorus in organic effluents upstream from methane production

  2017cites this paper
• High-yield production of recombinant CRM197, a non-toxic mutant of diphtheria toxin, in the periplasm of Escherichia coli.

  2017cites this paper
• Global Gene-expression Analysis of the Response of Salmonella Enteritidis to Egg White Exposure Reveals Multiple Egg White-imposed Stress Responses

  2017cites this paper
• Proteomic analysis of enterotoxigenic Escherichia coli (ETEC) in neutral and alkaline conditions

  2017cites this paper
• Bioprospecting For Genes That Confer Biofuel Tolerance To Escherichia Coli Using A Genomic Library Approach

  2017cites this paper
• Gene modification of Escherichia coli and incorporation of process control to decrease acetate accumulation and increase ʟ-tryptophan production

  2017influential citation