Natural Variation among Arabidopsis thaliana Accessions for Transcriptome Response to Exogenous Salicylic Acid[W][OA]

No abstract is available for this paper.

• Publication year

  2007

• Venue

  The Plant Cell Online

• Publication date

  2007-07-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1105/tpc.107.050641PMID 17630278PMCID PMC1955704
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Global eQTL Mapping Reveals the Complex Genetic Architecture of Transcript-Level Variation in Arabidopsis

  2007cited by this paper
• A mutation in the GTP hydrolysis site of Arabidopsis dynamin-related protein 1E confers enhanced cell death in response to powdery mildew infection.

  2006cited by this paper
• Identification of QTLs controlling gene expression networks defined a priori

  2006influential reference
• Defects in Allene Oxide Synthase and 12‐Oxa‐Phytodienoic Acid Reductase Alter the Resistance to Pseudomonas syringae and Botrytis cinerea

  2006cited by this paper
• Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens.

  2006cited by this paper
• Genomic Survey of Gene Expression Diversity in Arabidopsis thaliana

  2006cited by this paper
• Contribution of transcriptional regulation to natural variations in Arabidopsis

  2005influential reference
• Pseudomonas syringae manipulates systemic plant defenses against pathogens and herbivores.

  2005cited by this paper
• The Membrane-Anchored BOTRYTIS-INDUCED KINASE1 Plays Distinct Roles in Arabidopsis Resistance to Necrotrophic and Biotrophic Pathogens[W]

  2005cited by this paper
• Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation.

  2005cited by this paper
• Pajek - Analysis and Visualization of Large Networks

  2004cited by this paper
• Functional Annotation of the Arabidopsis Genome Using Controlled Vocabularies1

  2004cited by this paper
• Epistatic interaction between Arabidopsis FRI and FLC flowering time genes generates a latitudinal cline in a life history trait.

  2004cited by this paper
• Large-scale identification of single-feature polymorphisms in complex genomes.

  2003cited by this paper
• Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants.

  2003cited by this paper
• Topology of the network integrating salicylate and jasmonate signal transduction derived from global expression phenotyping.

  2003cited by this paper
• Gene expression data: The technology and statistical analysis

  2003cited by this paper
• Quantitative Nature of Arabidopsis Responses during Compatible and Incompatible Interactions with the Bacterial Pathogen Pseudomonas syringae Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.007591.

  2003cited by this paper
• AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis cis-regulatory elements and transcription factors

  2003cited by this paper
• Local Context Finder (LCF) reveals multidimensional relationships among mRNA expression profiles of Arabidopsis responding to pathogen infection

  2003influential reference
• Comparative analysis of quantitative trait loci controlling glucosinolates, myrosinase and insect resistance in Arabidopsis thaliana.

  2002cited by this paper
• Signals Involved in Arabidopsis Resistance toTrichoplusia ni Caterpillars Induced by Virulent and Avirulent Strains of the Phytopathogen Pseudomonas syringae 1

  2002cited by this paper
• Genetic Dissection of Transcriptional Regulation in Budding Yeast

  2002cited by this paper
• Multifactorial genetics: Mapping and analysis of quantitative trait loci in experimental populations

  2002cited by this paper
• Cross talk between signaling pathways in pathogen defense.

  2002cited by this paper
• Genetic Dissection of Transcriptional Regulation in Budding Yeast

  2002cited by this paper
• Gene Duplication in the Diversification of Secondary Metabolism: Tandem 2-Oxoglutarate–Dependent Dioxygenases Control Glucosinolate Biosynthesis in Arabidopsis

  2001cited by this paper
• The Arabidopsis Epithiospecifier Protein Promotes the Hydrolysis of Glucosinolates to Nitriles and Influences Trichoplusia ni Herbivory Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010261.

  2001cited by this paper
• Endless Forms: The Evolution of Gene Regulation and Morphological Diversity

  2000cited by this paper
• Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time.

  2000cited by this paper
• Jasmonic Acid Signaling Modulates Ozone-Induced Hypersensitive Cell Death

  2000cited by this paper
• Phenotypic plasticity for plant development, function and life history.

  2000cited by this paper
• Endless forms: the evolution of gene regulation and morphological diversity.

  2000cited by this paper
• The limits of selection during maize domestication

  1999influential reference
• The Arabidopsis RPS4 bacterial-resistance gene is a member of the TIR-NBS-LRR family of disease-resistance genes

  1999cited by this paper
• Ozone-induced cell death occurs via two distinct mechanisms in Arabidopsis: the role of salicylic acid.

  1999cited by this paper
• The Arabidopsis RPS4 bacterial-resistance gene is a member of the TIR-NBS-LRR family of disease-resistance genes.

  1999cited by this paper
• Cluster analysis and display of genome-wide expression patterns.

  1998cited by this paper
• Arabidopsis signal transduction mutant defective in chemically and biologically induced disease resistance.

  1995cited by this paper
• Controlling the false discovery rate: a practical and powerful approach to multiple testing

  1995influential reference
• Adaptive phenotypic plasticity: consensus and controversy.

  1995cited by this paper
• Protagonists of polyembryony

  1995cited by this paper
• Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance

  1995cited by this paper
• Requirement of Salicylic Acid for the Induction of Systemic Acquired Resistance

  1993cited by this paper
• A Simple Sequentially Rejective Multiple Test Procedure

  1979cited by this paper

• Advancing ecological and evolutionary research in Arabidopsis: Extending insights into model and nonmodel plants

  2025cites this paper
• Genetic suppressors of the growth‐immunity trade‐off in the Arabidopsis salicylic acid‐accumulating dmr6 dlo1 mutant

  2025cites this paper
• Regeneration and defense: unveiling the molecular interplay in plants

  2025cites this paper
• Transcriptomic analysis of two wheat genotypes in the presence of the pathogen Zymoseptoria tritici and the biological control agent Clonostachys rosea

  2025cites this paper
• Expression of a bacterial salicylate hydroxylase gene NahG impedes the expression of PAMP‐triggered immunity‐related genes in plants

  2025cites this paper
• Trans-regulatory loci shape natural variation of gene expression plasticity in Arabidopsis

  2024influential citation
• Distinct profiles of plant immune resilience revealed by natural variation in warm temperature-modulated disease resistance among Arabidopsis accessions.

  2024cites this paper
• Distinct mechanisms of plant immune resilience revealed by natural variation in warm temperature-modulated disease resistance among Arabidopsis accessions

  2023cites this paper
• Integrative transcriptomics reveals association of abscisic acid and lignin pathways with cassava whitefly resistance

  2023cites this paper
• Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses

  2022cites this paper
• 1 TITLE : Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses

  2022cites this paper
• FOLIAR APPLIED OF SALICYLIC ACID ALLEVIATED THE DETRIMENTAL EFFECTS OF DROUGHT ON VARIOUS GENOTYPES OF WHEAT (TRITICUMA ESTIVIUM L.)

  2022cites this paper
• Regulatory interactions in phytohormone stress signaling implying plants resistance and resilience mechanisms

  2021cites this paper
• Metabolomic Variation Aligns with Two Geographically Distinct Subpopulations of Brachypodium Distachyon before and after Drought Stress

  2021cites this paper
• Regulation of the microsomal proteome by salicylic acid and deficiency of phosphatidylinositol‐4‐kinases β1 and β2 in Arabidopsis thaliana

  2021cites this paper
• XAP5 CIRCADIAN TIMEKEEPER Affects Both DNA Damage Responses and Immune Signaling in Arabidopsis

  2021cites this paper
• Transcriptional variation analysis of Arabidopsis ecotypes in response to drought and salt stresses dissects commonly regulated networks.

  2020cites this paper
• Using networks to identify and interpret natural variation.

  2020cites this paper
• The rice/maize-pathogen Cochliobolus spp. infect and reproduce on Arabidopsis revealing differences in defensive phytohormone function between monocots and dicots.

  2020cites this paper
• Response of two Arabidopsis ecotypes Columbia-0 and Dijon-G to necrotrophic and biotrophic pathogens

  2019cites this paper
• Gene expression analysis of Cyanophora paradoxa reveals conserved abiotic stress responses between basal algae and flowering plants

  2019cites this paper
• Gene regulation and the emergence of phenotypes – a network approach

  2018influential citation
• DNA damage as a consequence of NLR activation

  2018cites this paper
• Impact of plant ecotype on Bacillus-mediated growth promotion

  2018cites this paper
• Natural Genetic Variation Shapes Root System Responses to Phytohormones in Arabidopsis

  2017cites this paper
• β-carbonic anhydrases play a role in salicylic acid perception in Arabidopsis

  2017cites this paper
• Evolution of Hormone Signaling Networks in Plant Defense.

  2017cites this paper
• Towards engineering of hormonal crosstalk in plant immunity.

  2017cites this paper
• Quantitative Genetics and Genomics of Plant Resistance to Insects

  2017cites this paper
• Gene co-expression network connectivity is an important determinant of selective constraint

  2017cites this paper
• Leaf Growth Response to Mild Drought: Natural Variation in Arabidopsis Sheds Light on Trait Architecture[OPEN]

  2016cites this paper
• Variation and local adaptation in stress response using statistical analysis and bioinformatics

  2016cites this paper
• Purifying selection provides buffering of the natural variation co-expression network in a forest tree species

  2016cites this paper
• Modulation of R-gene expression across environments

  2016cites this paper
• Transcriptome responses to temperature, water availability and photoperiod are conserved among mature trees of two divergent Douglas-fir provenances from a coastal and an interior habitat

  2016cites this paper
• Genetic Regulation of Transcriptional Variation in Natural Arabidopsis thaliana Accessions

  2016cites this paper
• Arabidopsis miR163 and its target are involved in defense against Pseudomonas syringae

  2016cites this paper
• Plant Resistance Inducers against Pathogens in Solanaceae Species—From Molecular Mechanisms to Field Application

  2016cites this paper
• Adaptive divergence in transcriptome response to heat and acclimation in Arabidopsis thaliana plants from contrasting climates

  2016cites this paper
• WRKY40 and WRKY6 act downstream of the green leaf volatile E-2-hexenal in Arabidopsis.

  2015influential citation
• Network Analyses Reveal Shifts in Transcript Profiles and Metabolites That Accompany the Expression of SUN and an Elongated Tomato Fruit1[OPEN]

  2015cites this paper
• Title: Both the Jasmonic Acid and the Salicylic Acid Pathways Contribute to Resistance to the Biotrophic Clubroot Agent Plasmodiophora brassicae in Arabidopsis Running head: JA and SA Signalling During Clubroot Infection

  2015cites this paper
• Metabolic fingerprinting of Arabidopsis thaliana accessions

  2015cites this paper
• Investigation of the multifunctional gene AOP3 expands the regulatory network fine-tuning glucosinolate production in Arabidopsis

  2015cites this paper
• Plant Physiomics: Photoelectrochemical and Molecular Retrograde Signalling in Plant Acclimatory and Defence Responses

  2015cites this paper
• How the plant-parasitic nematode Hirschmanniella oryzae is able to subdue the defense system of rice : a molecular analysis

  2015cites this paper
• Running head : 1 Network analyses of tomato fruit shape regulation

  2015cites this paper
• Both the Jasmonic Acid and the Salicylic Acid Pathways Contribute to Resistance to the Biotrophic Clubroot Agent Plasmodiophora brassicae in Arabidopsis.

  2015cites this paper
• Hormone-regulated defense and stress response networks contribute to heterosis in Arabidopsis F1 hybrids

  2015cites this paper
• A systematic simulation of the effect of salicylic acid on sphingolipid metabolism

  2014cites this paper
• Constitutive salicylic acid accumulation in pi4kIIIβ1β2 Arabidopsis plants stunts rosette but not root growth.

  2014cites this paper
• 7. Quantitative Genetics and Genomics of Plant Resistance to Insects

  2014cites this paper
• The AT-hook motif-encoding gene METABOLIC NETWORK MODULATOR 1 underlies natural variation in Arabidopsis primary metabolism

  2014cites this paper
• Global changes in gene expression, assayed by microarray hybridization and quantitative RT-PCR, during acclimation of three Arabidopsis thaliana accessions to sub-zero temperatures after cold acclimation

  2014cites this paper
• iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.

  2014cites this paper
• RNAseq-based transcriptome analysis of Lactuca sativa infected by the fungal necrotroph Botrytis cinerea.

  2013cites this paper
• Transcriptomic and Physiological Variations of Three Arabidopsis Ecotypes in Response to Salt Stress

  2013cites this paper
• Genetic and Genomic Analysis of Rhizoctonia solani Interactions with Arabidopsis; Evidence of Resistance Mediated through NADPH Oxidases

  2013cites this paper
• The barley UNICULM2 gene resides in a centromeric region and may be associated with signaling and stress responses

  2013cites this paper
• LESION SIMULATING DISEASE1, ENHANCED DISEASE SUSCEPTIBILITY1, and PHYTOALEXIN DEFICIENT4 Conditionally Regulate Cellular Signaling Homeostasis, Photosynthesis, Water Use Efficiency, and Seed Yield in Arabidopsis1[W]

  2013cites this paper
• The Arabidopsis oligopeptidases TOP1 and TOP2 are salicylic acid targets that modulate SA-mediated signaling and the immune response.

  2013cites this paper
• Physiological and biotechnological implications of transcript-level variation under abiotic stress.

  2013cites this paper
• LESION SIMULATING DISEASE 1 , ENHANCED DISEASE SUSCEPTIBILITY 1 , and PHYTOALEXIN DEFICIENT 4 Conditionally Regulate Cellular Signaling Homeostasis , Photosynthesis , Water Use Ef fi ciency , and Seed Yield in Arabidopsis 1

  2013cites this paper
• Physiological and cellular effects of TENin1, a novel small molecule inhibitor of endomembrane protein trafficking

  2013cites this paper
• Natural genetic variation in the expression regulation of chloroplast antioxidant system among A. thaliana accessions.

  2013cites this paper
• Imaging genetics of seed performance

  2013cites this paper
• Identifying Genotype-by-Environment Interactions in the Metabolism of Germinating Arabidopsis Seeds Using Generalized Genetical Genomics 1[C][W][OA]

  2013cites this paper
• Exploring the Shallow End; Estimating Information Content in Transcriptomics Studies

  2012cites this paper
• University of Groningen Identifying Genotype-by-Environment Interactions in the Metabolism of Germinating Arabidopsis Seeds Using Generalized Genetical Genomics

  2012cites this paper
• Genome-Wide Characterization of ISR Induced in Arabidopsis thaliana by Trichoderma hamatum T382 Against Botrytis cinerea Infection

  2012cites this paper
• Evaluating Characteristics of De Novo Assembly Software on 454 Transcriptome Data: A Simulation Approach

  2012cites this paper
• Broad-spectrum resistance of Arabidopsis C24 to downy mildew is mediated by different combinations of isolate-specific loci.

  2012cites this paper
• Multiple hormone treatment revealed novel cooperative relationships between abscisic acid and biotic stress hormones in cultured cells

  2012cites this paper
• Protease inhibitor (PI) mediated defense in leaves and flowers of pigeonpea (protease inhibitor mediated defense in pigeonpea).

  2012cites this paper
• Plant basal resistance: genetics, biochemistry, and impacts on plant-biotic interactions

  2012cites this paper
• Genetical Genomics - Genetic regulation of environmental responses in Arabidopsis

  2012cites this paper
• Rosette iron deficiency transcript and microRNA profiling reveals links between copper and iron homeostasis in Arabidopsis thaliana

  2012cites this paper
• A comparison of transcriptome and epigenetic status between closely related species in the genus Arabidopsis.

  2012cites this paper
• Making new molecules - evolution of pathways for novel metabolites in plants.

  2012cites this paper
• Coevolutionary genetic variation in the legume‐rhizobium transcriptome

  2012cites this paper
• Physiological Genomics of Response to Soil Drying in Diverse Arabidopsis Accessions[W][OA]

  2012cites this paper
• Comparative Proteomic Analysis of the Effects of Salicylic Acid and Abscisic Acid on Maize (Zea mays L.) Leaves

  2012cites this paper
• Combining Genome-Wide Association Mapping and Transcriptional Networks to Identify Novel Genes Controlling Glucosinolates in Arabidopsis thaliana

  2011cites this paper
• Quantitative genetic analysis of salicylic acid perception in Arabidopsis

  2011cites this paper
• Expression level polymorphisms: heritable traits shaping natural variation.

  2011cites this paper
• Use of natural variation reveals core genes in the transcriptome of iron-deficient Arabidopsis thaliana roots

  2011cites this paper
• An ecological genomic approach challenging the paradigm of differential plant responses to specialist versus generalist insect herbivores

  2011cites this paper
• Genetic dissection of basal defence responsiveness in accessions of Arabidopsis thaliana.

  2011cites this paper
• Natural Variation in Arabidopsis thaliana

  2011cites this paper
• Biological Functions of Arabidopsis TGA1 and TGA4 Transcription Factors

  2011cites this paper
• Domestication and plant genomes.

  2010cites this paper
• Natural variation in priming of basal resistance: from evolutionary origin to agricultural exploitation.

  2010cites this paper
• Resistance and biomass in Arabidopsis: a new model for salicylic acid perception.

  2010cites this paper
• Accumulation of Isochorismate-derived 2,3-Dihydroxybenzoic 3-O-β-d-Xyloside in Arabidopsis Resistance to Pathogens and Ageing of Leaves*

  2010cites this paper
• Structure-function analysis of npr1 alleles in Arabidopsis reveals a role for its paralogs in the perception of salicylic acid.

  2010cites this paper
• Intraspecific variation in the Populus balsamifera drought transcriptome.

  2010cites this paper
• Constitutive salicylic acid defences do not compromise seed yield, drought tolerance and water productivity in the Arabidopsis accession C24.

  2010cites this paper
• Exploring genetic and expression differences between physiologically extreme ecotypes: comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana.

  2010cites this paper
• Natural Variation of Transcriptional Auxin Response Networks in Arabidopsis thaliana[C][W][OA]

  2010cites this paper
• Update on Systems Biology and Natural Genetic Variation Systems Biology Uncovers the Foundation of Natural Genetic Diversity 1

  2010cites this paper