O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins

No abstract is available for this paper.

• Publication year

  1997

• Venue

  Nucleic Acids Res.

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1093/nar/25.1.278PMID 9016554PMCID PMC146398
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins

  1999cited by this paper
• Getting the glycosylation right: Implications for the biotechnology industry

  1996cited by this paper
• Charge Distribution of Flanking Amino Acids Influences O-Glycan Acquisition in Vivo(*)

  1996cited by this paper
• Prediction of O-glycosylation of mammalian proteins: specificity patterns of UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase.

  1995cited by this paper
• Purification and cDNA Cloning of a Human UDP-N-acetyl-α- D-galactosamine:polypeptide N-Acetylgalactosaminyltransferase (*)

  1995cited by this paper
• A vector projection method for predicting the specificity of GalNAc‐transferase

  1995cited by this paper
• A novel antibacterial peptide family isolated from the silkworm, Bombyx mori.

  1995cited by this paper
• Evidence for glycosylation sites on the 45-kilodalton glycoprotein of Mycobacterium tuberculosis

  1995cited by this paper
• Structure of the fibre-forming protein pilin at 2.6 Å resolution

  1995cited by this paper
• Mapping the mouse ZP3 combining site for sperm by exon swapping and site-directed mutagenesis.

  1995cited by this paper
• Towards characterizing O-glycans: the relative merits of in vivo and in vitro approaches in seeking peptide motifs specifying O-glycosylation sites.

  1994cited by this paper
• The SWISS-PROT protein sequence data bank: current status.

  1994cited by this paper
• Carbohydrate signals in metastasis and prognosis of human carcinomas.

  1993cited by this paper
• Glycosylation sites identified by solid-phase Edman degradation: O-linked glycosylation motifs on human glycophorin A.

  1993cited by this paper
• Artificial neural networks for pattern recognition in biochemical sequences.

  1993cited by this paper
• Post-translational modifications of the Dictyostelium discoideum glycoprotein PsA. Glycosylphosphatidylinositol membrane anchor and composition of O-linked oligosaccharides.

  1993cited by this paper
• Effect of modification of carbohydrate component on properties of glucoamylase

  1993cited by this paper
• O-linked fucose and other post-translational modifications unique to EGF modules.

  1993cited by this paper
• The specificity of UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase as inferred from a database of in vivo substrates and from the in vitro glycosylation of proteins and peptides.

  1993cited by this paper
• O-linked fucose is present in the first epidermal growth factor domain of factor XII but not protein C.

  1992cited by this paper
• Yeast glycoprotein biosynthesis: MNT1 encodes an alpha-1,2-mannosyltransferase involved in O-glycosylation.

  1992cited by this paper
• Purification and characterization of a UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase specific for glycosylation of threonine residues.

  1992cited by this paper
• Proteoglycans: many forms and many functions

  1992cited by this paper
• Glycosylation of nuclear and cytoplasmic proteins is ubiquitous and dynamic.

  1992cited by this paper
• Mucin-type glycoproteins.

  1992cited by this paper
• Human factor IX has a tetrasaccharide O-glycosidically linked to serine 61 through the fucose residue.

  1992cited by this paper
• Cell surface heparan sulfate proteoglycans.

  1992cited by this paper
• Glycosylation.

  1992cited by this paper
• Tissue plasminogen activator has an O-linked fucose attached to threonine-61 in the epidermal growth factor domain.

  1991cited by this paper
• The influence of flanking sequences on O-glycosylation.

  1991cited by this paper
• Cell surface mucin-type glycoproteins and mucin-like domains.

  1991cited by this paper
• Prediction of human mRNA donor and acceptor sites from the DNA sequence.

  1991cited by this paper
• Amino acid distributions around O-linked glycosylation sites.

  1991cited by this paper
• Structures and functional roles of the sugar chains of human erythropoietins.

  1991cited by this paper
• Glycosylation sites identified by detection of glycosylated amino acids released from Edman degradation: the identification of Xaa-Pro-Xaa-Xaa as a motif for Thr-O-glycosylation.

  1991cited by this paper
• Leukosialin, a major O-glycan-containing sialoglycoprotein defining leukocyte differentiation and malignancy.

  1991cited by this paper
• Why are proteins O-glycosylated?

  1990cited by this paper
• Sequence logos: a new way to display consensus sequences.

  1990cited by this paper
• Neural network detects errors in the assignment of mRNA splice sites.

  1990cited by this paper
• Identification of a disaccharide (Xyl-Glc) and a trisaccharide (Xyl2-Glc) O-glycosidically linked to a serine residue in the first epidermal growth factor-like domain of human factors VII and IX and protein Z and bovine protein Z.

  1989cited by this paper
• Isolation and sequence analysis of the glycosaminoglycan attachment site of type IX collagen.

  1988cited by this paper
• The nature of biotechnology.

  1988influential reference
• Proteins

  1987cited by this paper
• Identification and synthesis of a recognition signal for the attachment of glycosaminoglycans to proteins.

  1987cited by this paper
• Influence of quaternary structure on glycosylation. Differential subunit association affects the site-specific glycosylation of the common beta-chain from Mac-1 and LFA-1.

  1986cited by this paper
• Structural requirements of N-glycosylation of proteins. Studies with proline peptides as conformational probes.

  1983cited by this paper
• Trends in Biochemical Sciences

  1982influential reference
• Properties of potato lectin and the nature of its glycoprotein linkages.

  1978cited by this paper

• Role of Machine and Deep Learning in Predicting Protein Modification Sites: Review and Future Directions

  2025cites this paper
• Role of GALNT2 on Insulin Sensitivity, Lipid Metabolism and Fat Homeostasis

  2022cites this paper
• Mycobacteria and their sweet proteins: An overview of protein glycosylation and lipoglycosylation in M. tuberculosis.

  2019cites this paper
• Towards understanding the crosstalk between protein post‐translational modifications: Homo‐ and heterotypic PTM pair distances on protein surfaces are not random

  2017cites this paper
• Functional analysis of a chitinase gene during the larval-nymph transition in Panonychus citri by RNA interference

  2016cites this paper
• Effects of Glycosylation on the Enzymatic Activity and Mechanisms of Proteases

  2016cites this paper
• Exposure to Diflubenzuron Results in an Up-Regulation of a Chitin Synthase 1 Gene in Citrus Red Mite, Panonychus citri (Acari: Tetranychidae)

  2014cites this paper
• cDNAs Encoding Chitin Synthase from Shrimp (Pandalopsis Japonica): Molecular Characterization and Expression Analysis

  2014cites this paper
• Identification, mRNA Expression, and Functional Analysis of Chitin Synthase 1 Gene and Its Two Alternative Splicing Variants in Oriental Fruit Fly, Bactrocera dorsalis

  2013cites this paper
• Molecular Cloning and Sequence Analysis of an Or83b cDNA from Antenna of Heliothis viriplaca (Lepidoptera: Noctuoidea)

  2012cites this paper
• Silencing of two alternative splicing-derived mRNA variants of chitin synthase 1 gene by RNAi is lethal to the oriental migratory locust, Locusta migratoria manilensis (Meyen).

  2010cites this paper
• SysPTM: A Systematic Resource for Proteomic Research on Post-translational Modifications*

  2009cites this paper
• An Essential Role for the Stalk Region of CD8β in the Coreceptor Function of CD81

  2009cites this paper
• Hamster zona pellucida is formed by four glycoproteins: ZP1, ZP2, ZP3, and ZP4.

  2009cites this paper
• Cleavage of the signaling mucin Msb2 by the aspartyl protease Yps1 is required for MAPK activation in yeast

  2008cites this paper
• The degradation of glycoproteins with lithium borohydride: Isolation and analysis ofO-glycopeptides with reducedC-terminal amino acid residue

  2007cites this paper
• Identification and characterization of a cDNA encoding the acetylcholinesterase of Haematobia irritans (L.) (Diptera: Muscidae)

  2007cites this paper
• Glycoproteins of the vitelline envelope of Amphibian oocyte: Biological and molecular characterization of ZPC component (gp41) in Bufo arenarum

  2007cites this paper
• NetCGlyc 1.0: prediction of mammalian C-mannosylation sites.

  2007cites this paper
• C35 (C17orf37) is a novel tumor biomarker abundantly expressed in breast cancer

  2006cites this paper
• Organization, alternative splicing, polymorphism, and phylogenetic position of lamprey CD45 gene

  2005cites this paper
• Implications of Local Puumala Hantavirus Genetics and Epidemiology for Diagnostics and Vaccine Development

  2005cites this paper
• O‐Linked glycosylation and functional incompatibility of porcine von Willebrand factor for human platelet GPIb receptors

  2005cites this paper
• Impact of O‐linked glycosylation of the VWF‐A1‐domain flanking regions on platelet interaction

  2005influential citation
• Cloning, expression and phylogenetic analysis of Hemolin, from the Chinese oak silkmoth, Antheraea pernyi.

  2005cites this paper
• Development of a dna vaccine against _streptococcus mutans_: A novel approach to immunization against dental caries

  2005cites this paper
• Overproduction and characterization of xylanase B from Aspergillus niger.

  2005cites this paper
• Complete gene sequence of a human Puumala hantavirus isolate, Puumala Umeå/hu: sequence comparison and characterisation of encoded gene products.

  2004cites this paper
• Functional analyses of the chitin-binding domains and the catalytic domain of Brassica juncea chitinase BjCHI1

  2004cites this paper
• Identification of a Third Boophilus microplus (Acari: Ixodidae) cDNA Presumptively Encoding an Acetylcholinesterase

  2004cites this paper
• Analysis of the role of CD8{490} in co-receptor function.

  2004cites this paper
• Two cDNAs from the purple sea urchin, Strongylocentrotus purpuratus, encoding mosaic proteins with domains found in factor H, factor I, and complement components C6 and C7

  2004cites this paper
• Region-specific Expression and Secretion of the Fibrinogen-related Protein, fgl2, by Epithelial Cells of the Hamster Epididymis and Its Role in Disposal of Defective Spermatozoa*

  2004cites this paper
• Characterization of cDNAs encoding putative laccase-like multicopper oxidases and developmental expression in the tobacco hornworm, Manduca sexta, and the malaria mosquito, Anopheles gambiae.

  2004influential citation
• Investigations on the ORF 167L of Lymphocystis Disease Virus (Iridoviridae)

  2004cites this paper
• Functional cloning of ARM-1, an adhesion-regulating molecule upregulated in metastatic tumor cells

  2004cites this paper
• A novel CD45 transcript involving the alternative splicing of a new exon is widely distributed in lymphoid tissues.

  2004cites this paper
• Organization and expression of thirteen alternatively spliced exons in catfish CD45 homologs.

  2004cites this paper
• Glycosylation Broadens the Substrate Profile of Membrane Type 1 Matrix Metalloproteinase*

  2004cites this paper
• Pseudocowpox virus encodes a homolog of vascular endothelial growth factor.

  2003cites this paper
• Mass spectrometric identification of N- and O-glycosylation sites of full-length rat selenoprotein P and determination of selenide-sulfide and disulfide linkages in the shortest isoform.

  2003cites this paper
• Characterization and cDNA cloning of three major proteins from pharate pupal cuticle of Manduca sexta.

  2003cites this paper
• Properties of catalytic, linker and chitin-binding domains of insect chitinase.

  2003cites this paper
• Developmental changes in the biochemical and immunological characters of the carbohydrate moiety of neuroglycan C, a brain-specific chondroitin sulfate proteoglycan

  2003cites this paper
• Molecular Dynamics Simulations to Determine of the Optimum Length and Type of O-Glycosylation in the Linker Domain of Glucoamylase from Aspergillus awamori

  2003influential citation
• Localization and functional importance of a conserved zona pellucida 2 protein domain in the human and bovine ovary using monoclonal anti-ZP2 peptide antibodies.

  2003cites this paper
• Cell surface expression of C1qRP/CD93 is stabilized by O‐glycosylation

  2003influential citation
• Chitin metabolism in insects: structure, function and regulation of chitin synthases and chitinases

  2003influential citation
• SPACRCAN in the interphotoreceptor matrix of the mouse retina: molecular, developmental and promoter analysis.

  2003cites this paper
• Identification and analysis of gp116 and gp64 structural glycoproteins of yellow head nidovirus of Penaeus monodon shrimp.

  2003cites this paper
• Genetic diversity of avian infectious bronchitis virus California variants isolated between 1988 and 2001 based on the S1 subunit of the spike glycoprotein

  2003cites this paper
• Complete sequencing and expression of three complement components, C1r, C4 and C1 inhibitor, of the classical activation pathway of the complement system in rainbow trout Oncorhynchus mykiss

  2003cites this paper
• SC1/Hevin

  2003cites this paper
• Molecular Cloning and Biological Activity of α-, β-, and γ-Megaspermin, Three Elicitins Secreted by Phytophthora megasperma H20

  2003influential citation
• A molt-associated chitinase cDNA from the spruce budworm, Choristoneura fumiferana.

  2002cites this paper
• The Nogo receptor, its ligands and axonal regeneration in the spinal cord; A review

  2002cites this paper
• Cloning and Sequence Analysis of a cDNA Encoding Pso o II, a Mite Group II Allergen of the Sheep Scab Mite (Acari: Psoroptidae)

  2002influential citation
• Characterization of wood decay enzymes by MALDI-MS for post-translational modification and gene identification.

  2002cites this paper
• Production of HIV-1 p24 protein in transgenic tobacco plants

  2002cites this paper
• Hydrophobins DGH1, DGH2, and DGH3 in the lichen-forming basidiomycete Dictyonema glabratum.

  2002cites this paper
• Molecular characterization of the insect immune protein hemolin and its high induction during embryonic diapause in the gypsy moth, Lymantria dispar.

  2002cites this paper
• Partial Structure of Glutamic Acid and Alanine-rich Protein, a Major Surface Glycoprotein of the Insect Stages of Trypanosoma congolense *

  2002cites this paper
• Identification and Immunohistochemical Characterization of a Mucin-Like Glycoprotein Expressed in Early Stage Breast Carcinoma

  2002cites this paper
• Cloning and characterization of WMSU1, a Williopsis saturnus var. mrakii gene encoding a new yeast SUN protein involved in the cell wall structure

  2002influential citation
• Variation in Simian Immunodeficiency Virus env V1 Region in Simian AIDS-Associated Lymphoma

  2001cites this paper
• Posttranslational modifications of microfibril associated glycoprotein-1 (MAGP-1).

  2001cites this paper
• Cloning and Relative Expression Analysis of Rat Stromal Cell Derived Factor-1 (SDF-1): SDF-1 α mRNA Is Selectively Induced in Rat Model of Myocardial Infarction

  2001cites this paper
• Identification, isolation, and cloning of growth hormone (GH)-inducible interscapular brown adipose complementary deoxyribonucleic acid from GH antagonist mice.

  2001cites this paper
• LINUCS: linear notation for unique description of carbohydrate sequences.

  2001cites this paper
• An alternatively spliced Muc10 glycoprotein ligand for putative L-selectin binding during mouse embryonic submandibular gland morphogenesis.

  2001cites this paper
• A hatching enzyme substrate in the Xenopus laevis egg envelope is a high molecular weight ZPA homolog

  2001cites this paper
• Database analysis of O-glycosylation sites in proteins.

  2001cites this paper
• Molecular cloning and characterization of placental tissue protein 18 (PP18a)/human mitochondrial branched-chain aminotransferase (BCATm) and its novel alternatively spliced PP18b variant.

  2001cites this paper
• Identification of a nuclear variant of MGEA5, a cytoplasmic hyaluronidase and a beta-N-acetylglucosaminidase.

  2001cites this paper
• Differential screening and characterization analysis of the egg envelope glycoprotein ZP3 cDNAs between gynogenetic and gonochoristic crucian carp

  2001cites this paper
• Developmentally regulated glycosylation of the CD8alphabeta coreceptor stalk modulates ligand binding.

  2001cites this paper
• Computational tools for protein modeling.

  2000cites this paper
• Early steps in O-linked glycosylation and clustered O-linked glycans of herpes simplex virus type 1 glycoprotein C: effects on glycoprotein properties.

  2000cites this paper
• Isolation of MYADM, a novel hematopoietic‐associated marker gene expressed in multipotent progenitor cells and up‐regulated during myeloid differentiation

  2000cites this paper
• Ovine Interleukin-12: Analysis of Biologic Function and Species Comparison

  2000cites this paper
• Evidence that the lizard helospectin peptides are O-glycosylated.

  2000cites this paper
• Imidazoline Receptor Antisera-Selected (IRAS) cDNA: Cloning and Characterization

  2000cites this paper
• The AATPAP sequence is a very efficient signal for O-glycosylation in CHO cells

  1999cites this paper
• The human and rat recombinant receptors for advanced glycation end products have a high degree of homology but different pharmacokinetic properties in rats.

  1999cites this paper
• A 24 kDa parasitism-specific protein from the Caribbean fruit fly, Anastrepha suspensa: cDNA and deduced amino acid sequence.

  1999cites this paper
• FSP95, a testis-specific 95-kilodalton fibrous sheath antigen that undergoes tyrosine phosphorylation in capacitated human spermatozoa.

  1999cites this paper
• Partial Purification and Characterization ofBacillus thuringiensis Cry1A Toxin Receptor A fromHeliothis virescens and Cloning of the Corresponding cDNA

  1999cites this paper
• The role of a single N-linked glycosylation site for a functional epitope of herpes simplex virus type 1 envelope glycoprotein gC.

  1999influential citation
• Biochemical characterization and molecular cloning of a novel endothelial-specific sialomucin.

  1999cites this paper
• Ovochymase, a Xenopus laevis egg extracellular protease, is translated as part of an unusual polyprotease.

  1999cites this paper
• Versican/PG-M isoforms in vascular smooth muscle cells.

  1999cites this paper
• Multiple Isoforms of Heparan Sulfate d-Glucosaminyl 3-O-Sulfotransferase

  1999cites this paper
• Versican / PGM Isoforms in Vascular Smooth Muscle Cells

  1999cites this paper
• Glycosylation of natural human neutrophil gelatinase B and neutrophil gelatinase B-associated lipocalin.

  1999cites this paper
• O-Glycosylation of the V2 vasopressin receptor.

  1999cites this paper
• Eukaryotic glycosylation: whim of nature or multipurpose tool?

  1999cites this paper
• Chromogranin A from bovine adrenal medulla: molecular characterization of glycosylations, phosphorylations, and sequence heterogeneities by mass spectrometry.

  1999cites this paper
• Oviductin, the Xenopus laevis oviductal protease that processes egg envelope glycoprotein gp43, increases sperm binding to envelopes, and is translated as part of an unusual mosaic protein composed of two protease and several CUB domains.

  1999cites this paper
• Cloning and Sequencing of Human Oncodevelopmental Soluble Placental Tissue Protein 17 (PP17): Homology with Adipophilin and the Mouse Adipose Differentiation-Related Protein

  1999cites this paper
• Isolation and sequence analysis of a cDNA encoding human placental tissue protein 13 (PP13), a new lysophospholipase, homologue of human eosinophil Charcot-Leyden Crystal protein.

  1999cites this paper