Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean[OPEN]

No abstract is available for this paper.

• Publication year

  2016

• Venue

  The Plant Cell

• Publication date

  2016-03-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1105/tpc.15.00928PMID 26941092PMCID PMC4826011
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Phytochrome signaling: time to tighten up the loose ends.

  2015cited by this paper
• Tara Oceans studies plankton at planetary scale

  2015cited by this paper
• Eukaryotic algal phytochromes span the visible spectrum

  2015cited by this paper
• JPred4: a protein secondary structure prediction server

  2015cited by this paper
• Phytochrome diversity in green plants and the origin of canonical plant phytochromes

  2015cited by this paper
• The Acclimation of Phaeodactylum tricornutum to Blue and Red Light Does Not Influence the Photosynthetic Light Reaction but Strongly Disturbs the Carbon Allocation Pattern

  2014cited by this paper
• The Cryptochrome/Photolyase Family in aquatic organisms.

  2014cited by this paper
• System Responses to Equal Doses of Photosynthetically Usable Radiation of Blue, Green, and Red Light in the Marine Diatom Phaeodactylum tricornutum

  2014cited by this paper
• Genome engineering empowers the diatom Phaeodactylum tricornutum for biotechnology

  2014cited by this paper
• The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

  2014cited by this paper
• Marine algae and land plants share conserved phytochrome signaling systems

  2014cited by this paper
• Primary endosymbiosis and the evolution of light and oxygen sensing in photosynthetic eukaryotes

  2014cited by this paper
• Eukaryotic algal phytochromes span the visible spectrum

  2014influential reference
• Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana

  2013cited by this paper
• The number, speed, and impact of plastid endosymbioses in eukaryotic evolution.

  2013cited by this paper
• AUREOCHROME1a-Mediated Induction of the Diatom-Specific Cyclin dsCYC2 Controls the Onset of Cell Division in Diatoms (Phaeodactylum tricornutum)[W]

  2013cited by this paper
• MAREDAT: towards a world atlas of MARine Ecosystem DATa

  2013cited by this paper
• MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

  2012cited by this paper
• A global diatom database – abundance, biovolume and biomass in the world ocean

  2012cited by this paper
• Gene Regulation of Carbon Fixation, Storage, and Utilization in the Diatom Phaeodactylum tricornutum Acclimated to Light/Dark Cycles1[C][W][OA]

  2012cited by this paper
• Deep carbon export from a Southern Ocean iron-fertilized diatom bloom

  2012cited by this paper
• Thiol-based photocycle of the blue and teal light-sensing cyanobacteriochrome Tlr1999.

  2012influential reference
• Bacterial phytochromes: More than meets the light

  2011cited by this paper
• HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

  2011cited by this paper
• Creating the CIPRES Science Gateway for inference of large phylogenetic trees

  2010influential reference
• Phytochrome functions in Arabidopsis development.

  2010cited by this paper
• Deep silicon maxima in the stratified oligotrophic Mediterranean Sea

  2010cited by this paper
• Fungi, hidden in soil or up in the air: light makes a difference.

  2010cited by this paper
• Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity

  2009influential reference
• An Integrated Analysis of Molecular Acclimation to High Light in the Marine Diatom Phaeodactylum tricornutum

  2009cited by this paper
• Gene silencing in the marine diatom Phaeodactylum tricornutum

  2009cited by this paper
• Genomic Footprints of a Cryptic Plastid Endosymbiosis in Diatoms

  2009cited by this paper
• Photosystem I complexes associated with fucoxanthin-chlorophyll-binding proteins from a marine centric diatom, Chaetoceros gracilis.

  2008cited by this paper
• Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein

  2008cited by this paper
• The Phaeodactylum genome reveals the evolutionary history of diatom genomes

  2008cited by this paper
• Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum.

  2007cited by this paper
• Clustal W and Clustal X version 2.0

  2007cited by this paper
• The monomeric photosystem I-complex of the diatom Phaeodactylum tricornutum binds specific fucoxanthin chlorophyll proteins (FCPs) as light-harvesting complexes.

  2007cited by this paper
• IDENTIFICATION AND COMPARATIVE GENOMIC ANALYSIS OF SIGNALING AND REGULATORY COMPONENTS IN THE DIATOM THALASSIOSIRA PSEUDONANA 1

  2007cited by this paper
• The origin and evolution of the diatoms: their adaptation to a planktonic existence

  2007cited by this paper
• Circadian variability in the photobiology of Phaeodactylum tricornutum: pigment content

  2007cited by this paper
• Phytochrome structure and signaling mechanisms.

  2006cited by this paper
• Goulphar: rapid access and expertise for standard two-color microarray normalization methods

  2006cited by this paper
• Metabolic engineering to produce phytochromes with phytochromobilin, phycocyanobilin, or phycoerythrobilin chromophore in Escherichia coli

  2006cited by this paper
• The evolution and function of blue and red light photoreceptors.

  2005cited by this paper
• A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome

  2005influential reference
• A New Type of Bacteriophytochrome Acts in Tandem with a Classical Bacteriophytochrome to Control the Antennae Synthesis in Rhodopseudomonas palustris*

  2005cited by this paper
• The biliverdin chromophore binds covalently to a conserved cysteine residue in the N-terminus of Agrobacterium phytochrome Agp1.

  2004cited by this paper
• Light as an information carrier underwater

  2004cited by this paper
• Double-joint PCR: a PCR-based molecular tool for gene manipulations in filamentous fungi.

  2004cited by this paper
• The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism

  2004cited by this paper
• Diversification and spectral tuning in marine proteorhodopsins

  2003cited by this paper
• The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties

  2003cited by this paper
• Convection and primary production in winter

  2003cited by this paper
• A new mathematical model for relative quantification in real-time RT-PCR.

  2001cited by this paper
• Light spectral composition in a tropical forest: measurements and model.

  2000influential reference
• Light spectral composition in a tropical forest: measurements and model.

  2000influential reference
• Protein secondary structure prediction based on position-specific scoring matrices.

  1999cited by this paper
• Semi-quantitative RT-PCR analysis of photoregulated gene expression in marine diatoms

  1999cited by this paper
• Cluster analysis and display of genome-wide expression patterns.

  1998cited by this paper
• Primary production of the biosphere: integrating terrestrial and oceanic components

  1998cited by this paper
• Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry.

  1998cited by this paper
• Photoperception and signalling of induction reactions by different phytochromes

  1996cited by this paper
• Spotlight on phytochrome nomenclature

  1994cited by this paper
• Light and Water: Radiative Transfer in Natural Waters

  1994cited by this paper
• Comparison of numerical models for computing underwater light fields

  1994cited by this paper
• Comparison of numerical models for computing underwater light fields.

  1993cited by this paper
• Penetration of light into soil and its role in the control of seed germination

  1985influential reference
• Role of sinking in diatom life-history cycles: ecological, evolutionary and geological significance

  1985cited by this paper
• Life-forms of phytoplankton as survival alternatives in an unstable environment

  1978cited by this paper
• Culture of Phytoplankton for Feeding Marine Invertebrates

  1975influential reference
• Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

  1970cited by this paper

• Plants and the moonlight: A controversial subject revisited

  2026cites this paper
• Far-red light regulates phototactic behavior of benthic pennate epipelic diatoms under low irradiance

  2026cites this paper
• Circadian regulation of key physiological processes by the RITMO1 clock protein in the marine diatom Phaeodactylum tricornutum

  2025cites this paper
• Genetic engineering in diatoms: advances and prospects

  2025cites this paper
• Algal and cyanobacterial photolyases as resources for the cosmetic industry: Overview and perspective

  2025cites this paper
• Understanding the Biological Rhythms of Eukaryotic Microalgae and Their Biotechnological and Ecological Applications

  2025cites this paper
• Exploring the Synergistic Effects of Mixing, Initial pH Variability, and Light Wavelength on Diatom-Mediated Wastewater Remediation

  2024cites this paper
• Phycocyanobilin Binding and Specific Amino Acid Residues Near The Chromophore Contribute To Orange Light Perception By The Dualchrome Phytochrome Region

  2024cites this paper
• A rapid aureochrome opto-switch enables diatom acclimation to dynamic light

  2024cites this paper
• More than a photoreceptor: aureochromes are intrinsic to the diatom light-regulated transcriptional network

  2024cites this paper
• Transcriptome analysis of the harmful alga Heterosigma akashiwo under a 24-hour light-dark cycle.

  2024cites this paper
• SLC24A-mediated calcium exchange as an indispensable component of the diatom cell density-driven signaling pathway

  2024cites this paper
• Diatom phytochromes integrate the underwater light spectrum to sense depth

  2024cites this paper
• Diatoms: harnessing nature’s microscopic marvels for biosensing and multifaceted applications

  2024cites this paper
• Recent advances in genetic engineering of microalgae: bioengineering strategies, regulatory challenges and future perspectives

  2024cites this paper
• Effects of light spectra on growth and compositions of biomass, fatty acids, and pigments in three typical microalgae from different phyla

  2024cites this paper
• Phytochromes Enable Social Behavior in Marine Diatoms

  2024influential citation
• Ecological benefits of artificial light at night (ALAN): Accelerating the development and metamorphosis of marine shellfish larvae.

  2023cites this paper
• Diatom phytochromes integrate the entire visible light spectra for photosensing in marine environments

  2023cites this paper
• Identification of promoter targets by Aureochrome 1a in the diatom Phaeodactylum tricornutum

  2023cites this paper
• Overexpression of PtVDL1 in Phaeodactylum tricornutum Increases Fucoxanthin Content under Red Light

  2023cites this paper
• Cyanobacteriochromes from Gloeobacterales provide new insight into the diversification of cyanobacterial photoreceptors.

  2023cites this paper
• LHCF15 facilitates the absorption of longer wavelength light and promotes growth of Phaeodactylum tricornutum under red light

  2023cites this paper
• Expansion of photoreception-related gene families may drive ecological adaptation of the dominant diatom species Skeletonema marinoi.

  2023cites this paper
• The C-terminus of a diatom plant-like cryptochrome influences the FAD redox state and binding of interaction partners.

  2022cites this paper
• The Land-Sea Connection: Insights Into the Plant Lineage from a Green Algal Perspective.

  2022cites this paper
• Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros

  2022cites this paper
• Light-driven processes: key players of the functional biodiversity in microalgae.

  2022cites this paper
• Rhythms and Clocks in Marine Organisms.

  2022cites this paper
• Potential for the Production of Carotenoids of Interest in the Polar Diatom Fragilariopsis cylindrus

  2022cites this paper
• Evidence for evolutionary relationship between archaeplastidal and cyanobacterial phytochromes based on their chromophore pockets

  2022cites this paper
• Crystal structure of chloroplast fructose-1,6-bisphosphate aldolase from the green alga Chlamydomonas reinhardtii.

  2022cites this paper
• Enhanced production of astaxanthin and co-bioproducts from microalga Haematococcus sp. integrated with valorization of industrial wastewater under two-stage LED light illumination strategy

  2022cites this paper
• Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida

  2022cites this paper
• Multiple Profile Models Extract Features from Protein Sequence Data and Resolve Functional Diversity of Very Different Protein Families

  2022cites this paper
• Ecological impacts of photosynthetic light harvesting in changing aquatic environments: A systematic literature map

  2022cites this paper
• Aureochromes maintain polyunsaturated fatty acid content in Nannochloropsis oceanica.

  2022cites this paper
• Genetic manipulation of microalgae for enhanced biotechnological applications

  2022cites this paper
• Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities

  2021influential citation
• Regulation of Phaeodactylum plastid gene transcription by redox, light, and circadian signals

  2021cites this paper
• Phytochromes and Cyanobacteriochromes: Photoreceptor Molecules Incorporating a Linear Tetrapyrrole Chromophore.

  2021cites this paper
• Aureochromes are necessary for maintaining polyunsaturated fatty acid content in Nannochloropsis oceanica

  2021cites this paper
• Phytochromes in Agrobacterium fabrum

  2021cites this paper
• MyCLADE: a multi-source domain annotation server for sequence functional exploration

  2021cites this paper
• From Sea to Skin: Is There a Future for Natural Photoprotectants?

  2021cites this paper
• Effects of Light Intensity and Wavelength on the Phototaxis of the Crassostrea gigas (♂) and Crassostrea sikamea (♀) Hybrid Larvae

  2021cites this paper
• Effects of light qualities on growth, lipid contents and fatty acids profiles of Cylindrotheca closterium

  2021cites this paper
• Red/far-red light signals regulate the activity of the carbon-concentrating mechanism in cyanobacteria

  2021cites this paper
• Light intensity and spectral composition drive reproductive success in the marine benthic diatom Seminavis robusta

  2021cites this paper
• Silencing of a Pseudo-nitzschia arenysensis lipoxygenase transcript leads to reduced oxylipin production and impaired growth.

  2021cites this paper
• Photophobic Responses of Diatoms – Motility and Inter‐Species Modulation

  2021cites this paper
• The Red Edge: Bilin-Binding Photoreceptors as Optogenetic Tools and Fluorescence Reporters

  2021cites this paper
• Chlorophyll fluorescence as a light signal enhances iron uptake by the marine diatom Phaeodactylum tricornutum under high-cell density conditions

  2021cites this paper
• Pelagic diatoms communicate through synchronized beacon natural fluorescence signaling

  2021cites this paper
• Chlorophyll fluorescence as a light signal enhances iron uptake by the marine diatom Phaeodactylum tricornutum under high-cell density conditions

  2021influential citation
• Multiple probabilistic models extract features from protein sequence data

  2021cites this paper
• Spectral and photochemical diversity of tandem cysteine cyanobacterial phytochromes

  2020cites this paper
• Interactive effects of iron and light limitation on the molecular physiology of the Southern Ocean diatom Fragilariopsis kerguelensis

  2020cites this paper
• Systematic and functional analysis of horizontal gene transfer events in diatoms

  2020cites this paper
• The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms

  2020cites this paper
• Red Light Variation an Effective Alternative to Regulate Biomass and Lipid Profiles in Phaeodactylum tricornutum

  2020cites this paper
• Artificial Light at Night: A New Challenge in Microphytobenthos Research

  2020cites this paper
• Comprehensive and Functional Analysis of Horizontal Gene Transfer Events in Diatoms.

  2020influential citation
• Rapid and precise genome editing in a marine diatom, Thalassiosira pseudonana by Cas9 nickase (D10A)

  2020cites this paper
• Light-Harvesting Complexes of Diatoms: Fucoxanthin-Chlorophyll Proteins

  2020cites this paper
• The brown clock: circadian rhythms in stramenopiles.

  2020cites this paper
• The Aureochrome Photoreceptor PtAUREO1a Is a Highly Effective Blue Light Switch in Diatoms

  2020cites this paper
• bHLH-PAS protein RITMO1 regulates diel biological rhythms in the marine diatom Phaeodactylum tricornutum

  2019cites this paper
• ProfileView: multiple probabilistic models resolve protein families functional diversity

  2019cites this paper
• Biological aspects and biotechnological potential of marine diatoms in relation to different light regimens

  2019cites this paper
• Diatom Molecular Research Comes of Age: Model Species for Studying Phytoplankton Biology and Diversity[OPEN]

  2019cites this paper
• Plant Diversity and Adaptation

  2019cites this paper
• Phytochrome Evolution in 3D: Deletion, Duplication, and Diversification.

  2019cites this paper
• Fe limitation decreases transcriptional regulation over the diel cycle in the model diatom Thalassiosira pseudonana

  2019cites this paper
• RNA-Seq Analysis Reveals Genes Related to Photoreception, Nutrient Uptake, and Toxicity in a Noxious Red-Tide Raphidophyte Chattonella antiqua

  2019cites this paper
• Far-red light acclimation in diverse oxygenic photosynthetic organisms

  2019cites this paper
• Far red light induces the expression of LHCSR to trigger nonphotochemical quenching in the intertidal green macroalgae Ulva prolifera

  2019cites this paper
• A bHLH-PAS protein regulates light-dependent diurnal rhythmic processes in the marine diatom Phaeodactylum tricornutum

  2018cites this paper
• Genome editing in diatoms: achievements and goals

  2018cites this paper
• The fluorescent blue glow of banana fruits is not due to symplasmic plastidial catabolism but arises from insoluble phenols estherified to the cell wall.

  2018cites this paper
• Diurnal fluctuations in chloroplast GSH redox state regulate susceptibility to oxidative stress and cell fate in a bloom‐forming diatom

  2018cites this paper
• Advanced genetic tools enable synthetic biology in the oleaginous microalgae Nannochloropsis sp.

  2018cites this paper
• Light and photosynthetic microalgae: A review of cellular- and molecular-scale optical processes

  2018cites this paper
• Enhancement of carotenoid biosynthesis and antioxidant responses in diatoms by light modulation

  2018influential citation
• Toward Future Engineering of the N-Glycosylation Pathways in Microalgae for Optimizing the Production of Biopharmaceuticals

  2018cites this paper
• The Effects of Wavelength on the Growth of Licmophora abbreviata

  2018cites this paper
• One-step generation of multiple gene knock-outs in the diatom Phaeodactylum tricornutum by DNA-free genome editing

  2018cites this paper
• Light driven reactions in model algae.

  2017cites this paper
• Genetic and metabolic engineering in diatoms

  2017cites this paper
• The Influence of a Cryptochrome on the Gene Expression Profile in the Diatom Phaeodactylum tricornutum under Blue Light and in Darkness

  2017cites this paper
• An update on aureochromes: Phylogeny - mechanism - function.

  2017cites this paper
• The cryptochrome-photolyase protein family in diatoms.

  2017cites this paper
• Cryptochrome photoreceptors in green algae: Unexpected versatility of mechanisms and functions.

  2017cites this paper
• Phytochrome diversification in cyanobacteria and eukaryotic algae.

  2017cites this paper
• Recent progress in diatom genomics and epigenomics.

  2017cites this paper
• A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum

  2017cites this paper
• Red-light phenotype in a marine diatom involves a specialized oligomeric red-shifted antenna and altered cell morphology

  2017cites this paper
• Étude de la transcription par des techniques à haut-débit chez le dinoflagellé Lingulodinium polyedrum

  2017cites this paper
• Light sensing and responses in marine microalgae.

  2017cites this paper
• Molecular mechanisms and ecological function of far-red light signalling.

  2017cites this paper