Tracking earthworm communities from soil DNA

No abstract is available for this paper.

• Publication year

  2012

• Venue

  Molecular Ecology

• Publication date

  2012-04-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/j.1365-294X.2011.05407.xPMID 22250728
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Meta‐barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity

  2012cited by this paper
• Biological Identifications Through DNA Barcodes

  2012influential reference
• Coelomic fluid: a noninvasive source of DNA in earthworms

  2011cited by this paper
• Field guide to next‐generation DNA sequencers

  2011cited by this paper
• New insight into the genetic structure of the Allolobophora chlorotica aggregate in Europe using microsatellite and mitochondrial data

  2011cited by this paper
• An In silico approach for the evaluation of DNA barcodes

  2010cited by this paper
• DNA Barcoding Reveals Cryptic Diversity in Lumbricus terrestris L., 1758 (Clitellata): Resurrection of L. herculeus (Savigny, 1826)

  2010cited by this paper
• Grunting for worms: seismic vibrations cause Diplocardia earthworms to emerge from the soil

  2009cited by this paper
• Identifying earthworms through DNA barcodes: Pitfalls and promise

  2009cited by this paper
• Universal DNA-based methods for assessing the diet of grazing livestock and wildlife from feces.

  2009cited by this paper
• Earthworm collection from agricultural fields: Comparisons of selected expellants in presence/absence of hand-sorting

  2009influential reference
• DNA barcoding for ecologists.

  2009cited by this paper
• DNA barcodes for soil animal taxonomy

  2009cited by this paper
• Re‐integrating earthworm juveniles into soil biodiversity studies: species identification through DNA barcoding

  2009cited by this paper
• New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach

  2009cited by this paper
• Opening a can of worms: unprecedented sympatric cryptic diversity within British lumbricid earthworms

  2008cited by this paper
• Next-generation DNA sequencing

  2008cited by this paper
• A universal DNA mini-barcode for biodiversity analysis

  2008cited by this paper
• Worm Grunting, Fiddling, and Charming—Humans Unknowingly Mimic a Predator to Harvest Bait

  2008cited by this paper
• Efficacy and side effects of five sampling methods for soil earthworms (Annelida, Lumbricidae).

  2008influential reference
• Efficiency of two widespread non-destructive extraction methods under dry soil conditions for different ecological earthworm groups

  2008influential reference
• The Biology of Soil: A Community and Ecosystem Approach

  2008cited by this paper
• Photoswitchable fluorescent proteins enable monochromatic multilabel imaging and dual color fluorescence nanoscopy

  2008cited by this paper
• bold: The Barcode of Life Data System (http://www.barcodinglife.org)

  2007cited by this paper
• Identifying earthworms through DNA barcodes

  2007cited by this paper
• Thematic Issue on Horizontal Gene Transfer Review Release and persistence of extracellular DNA in the environment

  2007cited by this paper
• Inefficiency of mustard extraction technique for assessing size and structure of earthworm communities in UK pasture

  2006influential reference
• The use of earthworms in ecological soil classification and assessment concepts.

  2005cited by this paper
• Use of 18S, 16S rDNA and cytochrome c oxidase sequences in earthworm taxonomy (Oligochaeta, Lumbricidae): The 7th international symposium on earthworm ecology · Cardiff · Wales · 2002

  2003cited by this paper
• Use of 18S, 16S rDNA and cytochrome c oxidase sequences in earthworm taxonomy (Oligochaeta, Lumbricidae)

  2003cited by this paper
• Biological identifications through DNA barcodes

  2003cited by this paper
• Allyl isothiocyanate: an alternative chemical expellant for sampling earthworms

  2003cited by this paper
• PHYLOGEOGRAPHIC HISTORY OF THE LAND SNAIL CANDIDULA UNIFASCIATA (HELICELLINAE, STYLOMMATOPHORA): FRAGMENTATION, CORRIDOR MIGRATION, AND SECONDARY CONTACT

  2002cited by this paper
• Evaluating mustard extracts for earthworm sampling

  2001cited by this paper
• Appraisal of the electrical octet method for estimating earthworm populations in arable land

  2001cited by this paper
• BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT

  1999influential reference
• Earthworms as indicators of sustainable production in dryland cropping in southern Australia

  1997cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997influential reference
• Relative abundance and seasonal activity of earthworms (Lumbricidae and Megascolecidae) as determined by hand-sorting and formalin extraction in forest soils on the southern Appalachian Piedmont

  1997cited by this paper
• SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny

  1996influential reference
• Nucleic acids II: the polymerase chain reaction

  1996cited by this paper
• Reliable genotyping of samples with very low DNA quantities using PCR.

  1996cited by this paper
• Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris.

  1995cited by this paper
• DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

  1994cited by this paper
• A multiple-tubes approach for accurate genotyping of very small DNA samples by using PCR: statistical considerations.

  1992cited by this paper
• Basic local alignment search tool.

  1990cited by this paper
• Escape Reflexes in Earthworms and Other Annelids

  1984cited by this paper
• Lombriciens de France : écologie et systématique

  1973influential reference
• A general method applicable to the search for similarities in the amino acid sequence of two proteins.

  1970cited by this paper

• Advances in soil arthropod identification: Integrating morphological, molecular, and AI-based approaches

  2026cites this paper
• Properties and Limitations of eDNA Substrates for Terrestrial Animal Monitoring

  2026cites this paper
• Use of quantitative PCR to detect and differentiate earthworm species

  2025cites this paper
• Evaluating DNA extraction methods for eDNA metabarcoding of soil invertebrate diversity

  2025cites this paper
• Spider Webs, Soil or Leaf Swabs to Detect Environmental DNA From Terrestrial Vertebrates: What Is the Best Substrate?

  2025cites this paper
• DNA Barcoding Reveals a Single Genetic Lineage of the Peregrine Earthworm Lumbricus rubellus (Annelida, Lumbricidae) in the Northeastern Palearctic

  2025cites this paper
• A DNA metabarcoding workflow for the detection of terrestrial gastropods from ingested DNA

  2025cites this paper
• Comparison of Morphological and DNA‐Based Identification Methods to Assess Earthworm (Clitellata: Lumbricidae) Diversity at 25 Permanent Soil Monitoring Sites in Germany

  2025cites this paper
• Earthworm and enchytraeid indicator taxa of different land-use types identified using soil DNA metabarcoding

  2025influential citation
• Environmental DNA is more effective than hand sorting in evaluating earthworm biodiversity recovery under regenerative agriculture.

  2025cites this paper
• Assessing the value of environmental DNA into conservation planning: A case study of freshwater bivalves in France.

  2025cites this paper
• Comparison of microbial communities and nitrite formation in two different beet sugar extraction systems

  2024cites this paper
• Urban parks affect soil macroinvertebrate communities: The case of Tehran, Iran.

  2024cites this paper
• Development of an assay for the detection of the federally threatened Florida eastern indigo snake (Drymarchon couperi) using soil eDNA

  2024cites this paper
• The development of terrestrial ecosystems emerging after glacier retreat

  2024cites this paper
• Challenges of molecular barcode-based identification of earthworm specimens for biodiversity assessment

  2024cites this paper
• Environmental DNA: The next chapter

  2024cites this paper
• Nightmare of forests: Secondary forestation silently alters soil macroinvertebrate communities

  2024cites this paper
• Earthworms shape prokaryotic communities and affect extracellular enzyme activities in agricultural soil

  2023cites this paper
• Harnessing the power of eDNA technology for macroalgal ecological studies: Recent advances, challenges, and future perspectives

  2023cites this paper
• Applications of environmental DNA (eDNA) to detect subterranean and aquatic invasive species: A critical review on the challenges and limitations of eDNA metabarcoding

  2023cites this paper
• Mare-MAGE curated reference database of fish mitochondrial genes

  2023cites this paper
• Comparing earthworm biodiversity estimated by DNA metabarcoding and morphology-based approaches

  2023cites this paper
• Monitoring of honey bee floral resources with pollen DNA metabarcoding as a complementary tool to vegetation surveys

  2022cites this paper
• The topological nature of tag jumping in environmental DNA metabarcoding studies

  2022cites this paper
• Exploring the Biodiversity of a European NATURA 2000 Mediterranean Lagoon through eDNA Metabarcoding

  2022cites this paper
• Gut content metabarcoding and citizen science reveal the earthworm prey of the exotic terrestrial flatworm, Obama nungara

  2022cites this paper
• Population structure and genetic variance among local populations of a non-native earthworm species in Minnesota, USA

  2022cites this paper
• Environmental DNA Metabarcoding: A Novel Contrivance for Documenting Terrestrial Biodiversity

  2022influential citation
• Effects of Seasonal Variation of Abiotic Factors on eDNA Detection of two Groundwater Crayfish Species

  2022cites this paper
• Applications of environmental DNA (eDNA) in agricultural systems: Current uses, limitations and future prospects.

  2022cites this paper
• A review of applications of environmental DNA for reptile conservation and management

  2022cites this paper
• Why eDNA fractions need consideration in biomonitoring

  2022cites this paper
• Mitonuclear discordance and patterns of reproductive isolation in a complex of simultaneously hermaphroditic species, the Allolobophora chlorotica case study

  2022cites this paper
• Spider webs as eDNA samplers: Biodiversity assessment across the tree of life

  2022cites this paper
• A Review of Environmental DNA Field and Laboratory Protocols Applied in Fish Ecology and Environmental Health

  2022cites this paper
• Environmental DNA of insects and springtails from caves reveals complex processes of eDNA transfer in soils.

  2022cites this paper
• Trophic relations based on fecal DNA in tundra terrestrial food webs near Kongsfjorden, Svalbard, Norway

  2022cites this paper
• Reproductive strategies in a complex of simultaneously hermaphroditic species, the Allolobophora chlorotica case study

  2022cites this paper
• Metabarcoding data reveal vertical multitaxa variation in topsoil communities during the colonization of deglaciated forelands

  2022cites this paper
• Metabarcoding Malaise traps and soil eDNA reveals seasonal and local arthropod diversity shifts

  2021cites this paper
• Novel Technologies and Their Application for Protected Area Management: A Supporting Approach in Biodiversity Monitoring

  2021cites this paper
• Multi‐taxa colonisation along the foreland of a vanishing equatorial glacier

  2021cites this paper
• Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations

  2021cites this paper
• Potential of high-throughput eDNA sequencing of soil fungi and bacteria for monitoring ecological restoration in ultramafic substrates: The case study of the New Caledonian biodiversity hotspot

  2021cites this paper
• Optimal sequence similarity thresholds for clustering of molecular operational taxonomic units in DNA metabarcoding studies

  2021cites this paper
• A novel trap design for non-lethal monitoring of dung beetles using eDNA metabarcoding

  2021cites this paper
• Woody encroachment in grassland elicits complex changes in the functional structure of above‐ and belowground biota

  2021cites this paper
• Airborne environmental DNA for terrestrial vertebrate community monitoring

  2021cites this paper
• Unearthing the Potential of Soil eDNA Metabarcoding—Towards Best Practice Advice for Invertebrate Biodiversity Assessment

  2021cites this paper
• Environmental DNA detection of an invasive ant species (Linepithema humile) from soil samples

  2021cites this paper
• Reinforcement of Environmental DNA Based Methods (Sensu Stricto) in Biodiversity Monitoring and Conservation: A Review

  2021cites this paper
• DNA‐RNA Barcoding and Gene Sequencing

  2021cites this paper
• Bar-HRM for identification of cryptic earthworm species

  2020cites this paper
• Insights into the earthworm gut multi-kingdom microbial communities.

  2020cites this paper
• Exploration of four new Kanchuria sp. of earthworms (Oligochaeta: Megascolecidae) from the North Eastern Region of India using DNA bar-coding approach

  2020cites this paper
• Environmental DNA sampling in a terrestrial environment: methods to detect a critically endangered frog and a global pathogen

  2020cites this paper
• Sedimentary ancient DNA: Exploring methods of ancient DNA analysis for different taxonomic groups

  2020cites this paper
• Feeding behaviour of red fox and domestic cat populations in suburban areas in the south of Paris

  2020cites this paper
• Environmental conditions influence eDNA particle size distribution in aquatic systems

  2020cites this paper
• Methods and approaches to advance soil macroecology

  2020cites this paper
• Tools for monitoring and study of peregrine pheretimoid earthworms (Megascolecidae)

  2020cites this paper
• Soil biodiversity and biogeochemical function in managed ecosystems

  2020cites this paper
• Drivers of tropical soil invertebrate community composition and richness across tropical secondary forests using DNA metasystematics

  2020cites this paper
• Molecular characterization and DNA methylation profile of Libyodrilus violaceous from oil polluted soil

  2020cites this paper
• Spider webs as eDNA tool for biodiversity assessment of life’s domains

  2020cites this paper
• Applications of environmental DNA (eDNA) in ecology and conservation: opportunities, challenges and prospects

  2020cites this paper
• Investigating the Clitellata (Annelida) of Icelandic springs with alternative barcodes

  2019cites this paper
• Targeted Amplification and Sequencing of Ancient Environmental and Sedimentary DNA.

  2019cites this paper
• Detection of elusive fire salamander larvae (Salamandra salamandra) in streams via environmental DNA

  2019cites this paper
• How Do Richness and Composition of Diet Shape Trace Metal Exposure in a Free-Living Generalist Rodent, Apodemus sylvaticus.

  2019cites this paper
• Environmental DNA and metabarcoding for the study of amphibians and reptiles: species distribution, the microbiome, and much more

  2019cites this paper
• Single Fragment or Bulk Soil DNA Metabarcoding: Which is Better for Characterizing Biological Taxa Found in Surface Soils for Sample Separation?

  2019cites this paper
• Testing different (e)DNA metabarcoding approaches to assess aquatic oligochaete diversity and the biological quality of sediments

  2019cites this paper
• Diversity of Wadden Sea macrofauna and meiofauna communities highest in DNA from extractions preceded by cell lysis

  2019cites this paper
• Seasonal variations in exotic earthworm populations in wheat fields of the Inland Pacific Northwest, U.S.A.

  2019cites this paper
• Environmental DNA: An Emerging Tool in Ecological Assessment

  2019cites this paper
• A DNA metabarcoding approach to characterize soil arthropod communities

  2018cites this paper
• DNA metabarcoding identification of prescription ingredients in traditional medicine Ruyi Jinhuang San

  2018cites this paper
• Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples

  2018influential citation
• The sceptical optimist: challenges and perspectives for the application of environmental DNA in marine fisheries

  2018cites this paper
• Supplementary material 9 from: Weigand AM, Macher J-N (2018) A DNA metabarcoding protocol for hyporheic freshwater meiofauna: Evaluating highly degenerate COI primers and replication strategy. Metabarcoding and Metagenomics 2: e26869. https://doi.org/10.3897/mbmg.2.26869

  2018cites this paper
• A DNA metabarcoding protocol for hyporheic freshwater meiofauna: Evaluating highly degenerate COI primers and replication strategy

  2018cites this paper
• Does pollution influence small mammal diet in the field? A metabarcoding approach in a generalist consumer

  2018cites this paper
• Clitellate worms (Annelida) in lateglacial and Holocene sedimentary DNA records from the Polar Urals and northern Norway

  2018cites this paper
• Soil Biology and Soil Health Partnership Project 3: Molecular approaches for routine soil-borne disease and soil health assessment – establishing the scope

  2018cites this paper
• Improving eDNA methodologies to detect amphibians in turbid waters

  2018cites this paper
• Conservation de l’entomofaune ordinaire : enjeux scientifiques et sociétaux

  2018cites this paper
• LUCAS Soil, the largest expandable soil dataset for Europe: a review

  2018cites this paper
• Blood, sweat and tears: a review of non-invasive DNA sampling

  2018cites this paper
• Molecular Tools for Assessing Saproxylic Insect Diversity

  2018cites this paper
• DNA barcoding: How many earthworm species are there in the south of West Siberia?

  2017cites this paper
• L’ancienneté n’est pas un déterminant majeur de la biodiversité dans les massifs forestiers des Préalpes du Nord

  2017cites this paper
• Using nested PCR to improve detection of earthworm eDNA in Canada

  2017cites this paper
• DNA barcoding of the Thai species of terrestrial earthworms in the genera Amynthas and Metaphire (Haplotaxida: Megascolecidae)

  2017cites this paper
• A reference library of DNA barcodes for the earthworms from Upper Normandy: Biodiversity assessment, new records, potential cases of cryptic diversity and ongoing speciation

  2017cites this paper
• Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

  2017cites this paper
• From models to data : understanding biodiversity patterns from environmental DNA data

  2017cites this paper
• Filling reference gaps via assembling DNA barcodes using high-throughput sequencing—moving toward barcoding the world

  2017cites this paper
• An eDNA-Based SNP Assay for Ungulate Species and Sex Identification

  2017cites this paper