High-throughput sequencing reveals differential expression of miRNAs in tomato inoculated with Phytophthora infestans

No abstract is available for this paper.

• Publication year

  2015

• Venue

  Planta

• Publication date

  2015-02-20

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/s00425-015-2267-7PMID 25697288
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Transciptome Analysis of the Gill and Swimbladder of Takifugu rubripes by RNA-Seq

  2014cited by this paper
• The Arabidopsis miR472-RDR6 Silencing Pathway Modulates PAMP- and Effector-Triggered Immunity through the Post-transcriptional Control of Disease Resistance Genes

  2014influential reference
• Comparative expression profiling of miRNAs between the cytoplasmic male sterile line MeixiangA and its maintainer line MeixiangB during rice anther development

  2014cited by this paper
• Identification and functional analysis of novel and conserved microRNAs in tomato

  2014cited by this paper
• The Ph-3 gene from Solanum pimpinellifolium encodes CC-NBS-LRR protein conferring resistance to Phytophthora infestans

  2014influential reference
• Prediction and validation of potential pathogenic microRNAs involved in Phytophthora infestans infection

  2014cited by this paper
• Differential Expression of miRNAs in Brassica napus Root following Infection with Plasmodiophora brassicae

  2014cited by this paper
• [Mining and characterization of miRNAs closely associated with the pathogenicity in tomato].

  2014cited by this paper
• Molecular cloning and characterization of a pathogen-induced WRKY transcription factor gene from late blight resistant tomato varieties Solanum pimpinellifolium L3708

  2014influential reference
• SpMYB overexpression in tobacco plants leads to altered abiotic and biotic stress responses.

  2014cited by this paper
• MicroRNAs responding to southern rice black-streaked dwarf virus infection and their target genes associated with symptom development in rice.

  2014cited by this paper
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  2014cited by this paper
• Biogenesis, evolution, and functions of plant microRNAs

  2013cited by this paper
• Development of the gene-based SCARs for the Ph-3 locus, which confers late blight resistance in tomato

  2013cited by this paper
• Solanum resistance genes against Phytophthora infestans and their corresponding avirulence genes.

  2013cited by this paper
• Small yet mighty - microRNAs in plant-microbe interactions.

  2013cited by this paper
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  2013cited by this paper
• Comparative RNA-Seq Analysis of Early-Infected Peach Leaves by the Invasive Phytopathogen Xanthomonas arboricola pv. pruni

  2013cited by this paper
• Plant Nucleotide Binding Site–Leucine-Rich Repeat (NBS-LRR) Genes: Active Guardians in Host Defense Responses

  2013cited by this paper
• MicroRNA regulation of plant innate immune receptors

  2012influential reference
• Role of recently evolved miRNA regulation of sunflower HaWRKY6 in response to temperature damage.

  2012cited by this paper
• The tomato genome sequence provides insights into fleshy fruit evolution

  2012cited by this paper
• Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis

  2012influential reference
• Selective genotyping to identify late blight resistance genes in an accession of the tomato wild species Solanum pimpinellifolium

  2012cited by this paper
• Analysis of tomato microRNAs expression profile induced by Cucumovirus and Tobamovirus infections.

  2012cited by this paper
• A MicroRNA Superfamily Regulates Nucleotide Binding Site–Leucine-Rich Repeats and Other mRNAs[W][OA]

  2012cited by this paper
• miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants

  2011influential reference
• Viral Infection Induces Expression of Novel Phased MicroRNAs from Conserved Cellular MicroRNA Precursors

  2011cited by this paper
• MicroRNAs in tomato plants

  2011cited by this paper
• MicroRNAs as post-transcriptional machines and their interplay with cellular networks.

  2011cited by this paper
• MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.

  2011cited by this paper
• Bacteria-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks

  2010cited by this paper
• Construction of genetic linkage map and QTL analysis of Phytophthora infestans resistant gene Ph-2 in tomato.

  2010cited by this paper
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  2010cited by this paper
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  2010cited by this paper
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  2009cited by this paper
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  2008cited by this paper
• SOAP: short oligonucleotide alignment program

  2008influential reference
• Genetics, Genomics and Breeding of Late Blight and Early Blight Resistance in Tomato

  2008cited by this paper
• Methods for transient assay of gene function in floral tissues

  2007cited by this paper
• Specific Enrichment of miRNAs in Arabidopsis thaliana Infected with Tobacco mosaic virus

  2007cited by this paper
• Plant NBS-LRR proteins: adaptable guards

  2006influential reference
• The plant immune system

  2006cited by this paper
• Using half-normal probability plot and regression analysis to differentiate complex traits: differentiating disease response of multigenic resistance and susceptibility in tomatoes to multiple pathogen isolates

  2005cited by this paper
• Transfer to Processing Tomato and Characterization of Late Blight Resistance Derived from Solanum pimpinellifolium L. L3708

  2005influential reference
• The microRNA Registry

  2004cited by this paper
• Physical interaction between RRS1-R, a protein conferring resistance to bacterial wilt, and PopP2, a type III effector targeted to the plant nucleus

  2003cited by this paper
• RIN 4 Interacts with Pseudomonas syringae Type III Effector Molecules and Is Required for RPM 1-Mediated Resistance in Arabidopsis

  2002cited by this paper
• RIN4 interacts with Pseudomonas syringae type III effector molecules and is required for RPM1-mediated resistance in Arabidopsis.

  2002cited by this paper
• Direct interaction of resistance gene and avirulence gene products confers rice blast resistance

  2000cited by this paper
• Population Genetics and Intercontinental Migrations of Phytophthora Infestans

  1992cited by this paper
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  1991cited by this paper
• Plant Methods Protocol: a Highly Sensitive Rt-pcr Method for Detection and Quantification of Micrornas

  year unknowncited by this paper

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  2024influential citation
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  2023cites this paper
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  2023cites this paper
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  2020cites this paper
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  2020cites this paper
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  2020cites this paper
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  2020cites this paper
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  2020cites this paper
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  2019cites this paper
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  2019cites this paper
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  2019cites this paper
• Status and Prospects of Next Generation Sequencing Technologies in Crop Plants.

  2018cites this paper
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