Daphnia as an emerging model for toxicological genomics

No abstract is available for this paper.

• Publication year

  2008

• Venue

  Unknown venue

• Publication date

  Unknown publication date

• Fields of study

  Biology, Environmental Science

• Identifiers
  DOI 10.1016/S1872-2423(08)00005-7
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• ( Crustacea : Cladocera ) : the role of host genetics Daphnia The cause of parasitic infection in natural populations of

  2010cited by this paper
• Ecological genomics in Daphnia: stress responses and environmental sex determination

  2008cited by this paper
• Linking molecular and population stress responses in Daphnia magna exposed to cadmium.

  2008influential reference
• Sampling Daphnia's expressed genes: preservation, expansion and invention of crustacean genes with reference to insect genomes

  2007cited by this paper
• Daphnia magna ecotoxicogenomics provides mechanistic insights into metal toxicity.

  2007influential reference
• Daphnia magna and ecotoxicogenomics: gene expression profiles of the anti-ecdysteroidal fungicide fenarimol using energy-, molting- and life stage-related cDNA libraries.

  2007cited by this paper
• Molecular responses during cadmium-induced stress in Daphnia magna: integration of differential gene expression with higher-level effects.

  2007cited by this paper
• Development of a daphnia magna DNA microarray for evaluating the toxicity of environmental chemicals

  2007influential reference
• Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins

  2007influential reference
• Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex

  2007cited by this paper
• Genomics: Applications, Challenges, and Opportunities for the U.S. Environmental Protection Agency

  2006cited by this paper
• The systematics of Australian Daphnia and Daphniopsis (Crustacea: Cladocera): a shared phylogenetic history transformed by habitat-specific rates of evolution

  2006cited by this paper
• Transitions to Asexuality Result in Excess Amino Acid Substitutions

  2006cited by this paper
• Microsatellite markers for European Daphnia

  2006cited by this paper
• Genomic Approaches for Cross-Species Extrapolation in Toxicology

  2006cited by this paper
• Molecular impact of propiconazole on Daphnia magna using a reproduction-related cDNA array.

  2006influential reference
• Warmer does not have to mean sicker: temperature and predators can jointly drive timing of epidemics.

  2006cited by this paper
• HPLC-DAD and Q-TOF MS techniques identify cause of Daphnia biomonitor alarms in the River Meuse.

  2006cited by this paper
• A framework for the use of genomics data at the EPA

  2006cited by this paper
• Comparative toxicity of cadmium, zinc, and mixtures of cadmium and zinc to daphnids

  2006influential reference
• Molecular mapping of quantitative trait loci for zinc toxicity tolerance in rice seedling (Oryza sativa L.)

  2006cited by this paper
• MGED Standards: Work in Progress

  2006cited by this paper
• Empirical Support for Optimal Virulence in a Castrating Parasite

  2006cited by this paper
• Neutral and adaptive variation in gene expression.

  2006cited by this paper
• Expression of target and reference genes in Daphnia magna exposed to ibuprofen

  2006cited by this paper
• Transcriptional readthrough of Hox genes Ubx and Antp and their divergent post‐transcriptional control during crustacean evolution

  2006cited by this paper
• A microsatellite-based genetic linkage map of the waterflea, Daphnia pulex: On the prospect of crustacean genomics.

  2006cited by this paper
• ‚ÄúOmics‚Äù Approaches in the Context of Environmental Toxicology

  2006cited by this paper
• Selection of Surrogate Animal Species for Comparative Toxicogenomics

  2006cited by this paper
• Why Sex?

  2006cited by this paper
• Viral transgenesis of embryonic cell cultures from the freshwater microcrustacean Daphnia.

  2006cited by this paper
• Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic

  2005cited by this paper
• Characterization and comparison of microsatellites derived from repeat-enriched libraries and expressed sequence tags.

  2005influential reference
• Ecological consequences of phenotypic plasticity.

  2005cited by this paper
• wFleaBase: the Daphnia genome database

  2005cited by this paper
• Advances in toxicogenomics.

  2005cited by this paper
• Expressed sequence tag-linked microsatellites as a source of gene-associated polymorphisms for detecting signatures of divergent selection in atlantic salmon (Salmo salar L.).

  2005influential reference
• Stress signaling: coregulation of hemoglobin and male sex determination through a terpenoid signaling pathway in a crustacean

  2005cited by this paper
• Inferring gene transcriptional modulatory relations: a genetical genomics approach.

  2005cited by this paper
• Evolutionary genetics of aging in Daphnia.

  2005cited by this paper
• Better the devil you know? A precautionary approach to using amphipods and daphnids in endocrine disruptor studies: To the editor

  2005cited by this paper
• Genetical Genomics Analysis of a Yeast Segregant Population for Transcription Network Inference

  2005cited by this paper
• Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease

  2005cited by this paper
• Analysis of expressed sequence tags of the water flea Daphnia magna.

  2005influential reference
• Evolution of phenotypic plasticity: where are we going now?

  2005cited by this paper
• BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

  2005influential reference
• Physiological characterisation of a pH- and calcium-dependent sodium uptake mechanism in the freshwater crustacean, Daphnia magna

  2005cited by this paper
• Methodological aspects of the genetic dissection of gene expression

  2005cited by this paper
• Production of male neonates in Daphnia magna (Cladocera, Crustacea) exposed to juvenile hormones and their analogs.

  2005cited by this paper
• The genetic dissection of immune response using gene-expression studies and genome mapping.

  2005cited by this paper
• Species diversity and endemism in the Daphnia of Argentina: a genetic investigation

  2004cited by this paper
• Genomic and proteomic profiling for biomarkers and signature profiles of toxicity.

  2004cited by this paper
• Morphological responses of Daphnia pulex to Chaoborus americanus kairomone in the presence and absence of metals

  2004cited by this paper
• At the Crossroads of Genomics and Ecology: The Promise of a Canary on a Chip

  2004influential reference
• Genetic analysis of genome-wide variation in human gene expression

  2004cited by this paper
• Genome-wide transcription profile of field- and laboratory-selected dichlorodiphenyltrichloroethane (DDT)-resistant Drosophila.

  2004cited by this paper
• FlyBase: genes and gene models

  2004cited by this paper
• Genomic and proteomic profiling for biomarkers and signature profiles of toxicity.

  2004cited by this paper
• Lactose causes heart arrhythmia in the water flea Daphnia pulex.

  2004cited by this paper
• Gene finding in novel genomes

  2004influential reference
• The Evolution of Virulence When Parasites Cause Host Castration and Gigantism

  2004cited by this paper
• Epistasis: too often neglected in complex trait studies?

  2004cited by this paper
• Promoting comparative molecular studies in environmental health research: an overview of the comparative toxicogenomics database (CTD)

  2004cited by this paper
• Five hundred and twenty-eight microsatellite markers for ecological genomic investigations using Daphnia

  2004influential reference
• Genetic Determination of Tolerance to Lethal and Sublethal Copper Concentrations in Field Populations of Daphnia longispina

  2004cited by this paper
• New microsatellite primers for Daphnia galeata mendotae

  2004cited by this paper
• A multi-environment comparison of senescence between sister species of Daphnia

  2003cited by this paper
• Maternal transfer of strain-specific immunity in an invertebrate.

  2003cited by this paper
• Genomic and proteomic profiling of responses to toxic metals in human lung cells.

  2003cited by this paper
• Developmental plasticity and evolution

  2003cited by this paper
• Hexapod Origins: Monophyletic or Paraphyletic?

  2003cited by this paper
• Reconstruction of Centuries-old Daphnia Communities in a Lake Recovering from Acidification and Metal Contamination

  2003cited by this paper
• Insecticidal juvenile hormone analogs stimulate the production of male offspring in the crustacean Daphnia magna.

  2003cited by this paper
• ‘Ancient’ DNA in the resting egg bank of a microcrustacean can serve as a palaeolimnological database

  2002cited by this paper
• Array technology as a tool to monitor exposure of fish to xenoestrogens.

  2002cited by this paper
• The generic genome browser: a building block for a model organism system database.

  2002influential reference
• Gene expression analysis reveals chemical-specific profiles.

  2002cited by this paper
• The genetics of variation in gene expression

  2002cited by this paper
• STRONG INBREEDING DEPRESSION IN A DAPHNIA METAPOPULATION

  2002cited by this paper
• Prediction of compound signature using high density gene expression profiling.

  2002cited by this paper
• Tempo and mode in evolution: phylogenetic inertia, adaptation and comparative methods

  2002cited by this paper
• Genomic interrogation of mechanism(s) underlying cellular responses to toxicants.

  2002cited by this paper
• The Mannose-Sensitive Hemagglutinin ofVibrio cholerae Promotes Adherence to Zooplankton

  2001cited by this paper
• NATURAL SELECTION FOR GRAZER RESISTANCE TO TOXIC CYANOBACTERIA: EVOLUTION OF PHENOTYPIC PLASTICITY?

  2001cited by this paper
• Rapid, local adaptation of zooplankton behavior to changes in predation pressure in the absence of neutral genetic changes

  2001cited by this paper
• Quantitative trait loci in Drosophila

  2001cited by this paper
• Genetical genomics: the added value from segregation.

  2001cited by this paper
• Unique gene expression patterns in liver and kidney associated with exposure to chemical toxicants.

  2001cited by this paper
• Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles.

  2001cited by this paper
• Microarray analysis of hepatotoxins in vitro reveals a correlation between gene expression profiles and mechanisms of toxicity.

  2001cited by this paper
• Hypoxia-induced gene expression profiling in the euryoxic fish Gillichthys mirabilis.

  2001cited by this paper
• The senescence of Daphnia from risky and safe habitats

  2001cited by this paper
• Casarett and Doull's toxicology : the basic science of poisons

  2001cited by this paper
• Haber's rule: a special case in a family of curves relating concentration and duration of exposure to a fixed level of response for a given endpoint.

  2000cited by this paper
• Molecular systematics of European Hyalodaphnia: the role of contemporary hybridization in ancient species

  2000cited by this paper
• A FUNDAMENTAL TRADE‐OFF IN RESOURCE EXPLOITATION BY DAPHNIA AND CONSEQUENCES TO PLANKTON COMMUNITIES

  2000cited by this paper
• Multi‐locus genetic evidence for rapid ecologically based speciation in Daphnia

  2000cited by this paper
• Functional discovery via a compendium of expression profiles.

  2000cited by this paper
• Lake ecosystems: Rapid evolution revealed by dormant eggs

  1999cited by this paper
• Genetics and analysis of quantitative traits

  1999influential reference

• Antibiotics Induce Metabolic and Physiological Responses in Daphnia magna

  2026cites this paper
• Metabolomics identified distinct molecular-level responses in Daphnia magna after exposure to phenanthrene and its oxygen and nitrogen containing analogs.

  2025cites this paper
• Quercetin enhances antioxidant capacity and reproductive performance in daphnia pulex.

  2025cites this paper
• The effects of tritiated water on competitive outcomes of two Daphnia species in lakes: A reaction-diffusion tritium-taxis model.

  2025cites this paper
• Investigating the translational effects of in vitro LC50 on in vivo responses: Comparative toxicity analysis of bisphenol A (BPA) in Daphnia magna

  2025cites this paper
• Proteomic Profile of Daphnia pulex in Response to Heavy Metal Pollution in Lakes of Northern Patagonia

  2025cites this paper
• Revision of Lathonurarectirostris (O.F. Müller, 1785) (Anomopoda, Macrothricidae) leads to translocation of East Asian populations to a separate species, Lathonurabekkerae sp. nov.

  2025cites this paper
• Design and optimization of a recirculating aquaculture system (RAS) for live feed production in aquaculture: a case study using Daphnia magna

  2025cites this paper
• A non‐monophyly of ‘crowned’ Daphnia (Ctenodaphnia) Dybowski et Grochowski, 1895 (Cladocera: Daphniidae): From genomes to morphology

  2024cites this paper
• The toxicity assessment of phosmet on development, reproduction, and gene expression in Daphnia magna

  2024cites this paper
• Zooplankton-Based Adverse Outcome Pathways: A Tool for Assessing Endocrine Disrupting Compounds in Aquatic Environments.

  2024cites this paper
• Biomarkers in aquatic systems: Advancements, applications and future directions

  2024cites this paper
• Polystyrene microplastics induce molecular toxicity in Simocephalus vetulus: A transcriptome and intestinal microorganism analysis.

  2024cites this paper
• Toxic Effects of Acute and Chronic Atorvastatin Exposure on Antioxidant Systems, Autophagy Processes, Energy Metabolism and Life History in Daphnia magna.

  2024cites this paper
• Microplastics originated from Plasmix-based materials caused biochemical and behavioral adverse effects on Daphnia magna.

  2024cites this paper
• A web-based histology atlas for the freshwater sentinel species Daphnia magna

  2024cites this paper
• Chronic Exposure to Low Molecular Weight Polycyclic Aromatic Hydrocarbons Promotes Metabolic Inflammation in Vertebrate and Invertebrate Systems

  2023influential citation
• History of exposure to copper influences transgenerational gene expression responses in Daphnia magna

  2023cites this paper
• Infiltration of freshwater food chain by nanoplastics: An examination of trophic transfer and biological impact.

  2023cites this paper
• Toxicant Responses and Culturing Characteristics of Long‐Term Laboratory‐Reared and Field Populations of Ceriodaphnia dubia

  2023cites this paper
• Toxicity of microplastics and nanoplastics to Daphnia magna: Current status, knowledge gaps and future directions

  2023cites this paper
• Toxicity of “green solvents” - The impact of butyl methylimidazolium ionic liquids on daphnids

  2023cites this paper
• The Precision Toxicology Initiative.

  2023cites this paper
• A web-based histology atlas for the freshwater crustacean Daphnia magna

  2023cites this paper
• Novel peptide identified from viable-cell based phage display technique regulates growth cycle of Daphnia magna.

  2023cites this paper
• Acute and Transgenerational Effects of Non-Steroidal Anti-Inflammatory Drugs on Daphnia magna

  2023cites this paper
• Detection of Salmonella dublin using the vitellogenin 2 promoter of Daphnia magna.

  2023cites this paper
• Molecular Responses of Daphnids to Chronic Exposures to Pharmaceuticals

  2023cites this paper
• Recent advances in crustacean genomics and their potential application in aquaculture

  2023cites this paper
• TOXICITY EVALUATION AND BEHAVIOURAL STUDIES OF LABEO ROHITA AND CTENOPHARYNGDON

  2022cites this paper
• Review on the ecotoxicological impacts of plastic pollution on the freshwater invertebrate Daphnia

  2022influential citation
• Bivalve molluscs as biosensors of water quality: state of the art and future directions

  2022cites this paper
• Discovery of a New Species of Daphnia (Crustacea: Cladocera) from the Arabian Peninsula Revealed a Southern Origin of a Common Northern Eurasian Species Group

  2022cites this paper
• Multigenerational DNA methylation responses to copper exposure in daphnia: Potential targets for epigenetic biomarkers?

  2022cites this paper
• History of Colonization of Jeju Island (Republic of Korea) by the Water Fleas (Crustacea: Cladocera) Is Reflected by the Seasonal Changes in Their Fauna and Species Associations

  2022cites this paper
• Thermal stress and mutation accumulation increase heat shock protein expression in Daphnia

  2022cites this paper
• Contribution of freshwater metazooplankton to aquatic ecosystem services: an overview

  2022cites this paper
• Toxicity Reduction of Microcystis Aeruginosa Using Microbubble Ozonation

  2022cites this paper
• Genome-wide identification of 194 G protein-coupled receptor (GPCR) genes from the water flea Daphnia magna.

  2022cites this paper
• Does a Diet Rich in the Bacterium Rhodopirellula rubra Improve Daphnia magna Performance?

  2022cites this paper
• Pollution induces epigenetic effects that are stably transmitted across multiple generations

  2022cites this paper
• The freshwater water flea Daphnia magna NIES strain genome as a resource for CRISPR/Cas9 gene targeting: The glutathione S-transferase omega 2 gene.

  2021cites this paper
• Bioaccumulation assessment of nanomaterials using freshwater invertebrate species

  2021cites this paper
• Circadian Rhythm in Feeding Behavior of Daphnia dentifera

  2021cites this paper
• NMR spectroscopy of wastewater: A review, case study, and future potential.

  2021cites this paper
• Combined targeted/untargeted analytical and chemometric approaches in the characterization of Daphnia magna metabolomic changes under bisphenol A exposure

  2021cites this paper
• Emerging trends in nanoparticle toxicity and the significance of using Daphnia as a model organism.

  2021cites this paper
• Experimental sound exposure modifies swimming activities and increases food handling error in adult zebrafish

  2021cites this paper
• The effect of microplastics on the speed, mortality rate, and swimming patterns of Daphnia Magna

  2021cites this paper
• The genome of the marine water flea Diaphanosoma celebensis: Identification of phase I, II, and III detoxification genes and potential applications in marine molecular ecotoxicology.

  2021cites this paper
• Polystyrene nanoplastic induces oxidative stress, immune defense, and glycometabolism change in Daphnia pulex: Application of transcriptome profiling in risk assessment of nanoplastics.

  2021cites this paper
• Linking multiple biomarker responses in Daphnia magna under thermal stress.

  2020cites this paper
• A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex

  2020cites this paper
• Acute ecotoxicity and genotoxicity assessment of two wastewater treatment units

  2020cites this paper
• Two sigma and two mu class genes of glutathione S-transferase in the waterflea Daphnia pulex: Molecular characterization and transcriptional response to nanoplastic exposure.

  2020cites this paper
• Assessment of hazardous property HP 14 using ecotoxicological tests: a case study of weathered coal fly ash

  2020cites this paper
• Biofilms grown in aquatic microcosms affect mercury and selenium accumulation in Daphnia

  2020cites this paper
• University of Birmingham Development and application of a ratiometric nanosensor for measuring pH inside the gastrointestinal tract of zooplankton

  2020cites this paper
• Embryogenesis plasticity and the transmission of maternal effects in Daphnia pulex

  2020cites this paper
• Metal exposure causes rDNA copy number to fluctuate in mutation accumulation lines of Daphnia pulex.

  2020cites this paper
• NMR assignment of the in vivo daphnia magna metabolome.

  2020cites this paper
• Calmodulin inhibition as a mode of action of antifungal imidazole pharmaceuticals in non-target organisms

  2020cites this paper
• Cytotoxicological evaluation of copper oxide nanoparticles on green algae, bacteria and crustacean systems

  2020cites this paper
• Impact of bovine serum albumin - A protein corona on toxicity of ZnO NPs in environmental model systems of plant, bacteria, algae and crustaceans.

  2020cites this paper
• Assessment of Rhodopirellula rubra as a supplementary and nutritional food source to the microcrustacean Daphnia magna

  2019cites this paper
• A fossil-calibrated phylogenomic analysis of Daphnia and the 1 Daphniidae 2 3 4

  2019cites this paper
• Evaluation of 4-nonylphenol and bisphenol A toxicity using multiple molecular biomarkers in the water flea Daphnia magna

  2019cites this paper
• Alaksen National Wildlife Area: Reservoir suitability for the introduction of the endangered Western Painted Turtle

  2019cites this paper
• The ecotoxicological impact of microplastics on freshwater invertebrates

  2019cites this paper
• A fossil-calibrated phylogenomic analysis of Daphnia and the Daphniidae.

  2019cites this paper
• Metabolic profiling of Daphnia magna exposure to a mixture of hydrophobic organic contaminants in the presence of dissolved organic matter.

  2019cites this paper
• Effects of insecticides, fipronil and imidacloprid, on the growth, survival, and behavior of brown shrimp Farfantepenaeus aztecus

  2019cites this paper
• The genome of the freshwater water flea Daphnia magna: A potential use for freshwater molecular ecotoxicology.

  2019cites this paper
• Exploring and analyzing omics using bioinformatics tools and techniques

  2018cites this paper
• Toxicogenomic responses of low level anticancer drug exposures in Daphnia magna.

  2018cites this paper
• Metabolomics Discovers Early-Response Metabolic Biomarkers that Can Predict Chronic Reproductive Fitness in Individual Daphnia magna

  2018cites this paper
• Lethal and sub-lethal effects of the insecticide fipronil on juvenile brown shrimp Farfantepenaeus aztecus

  2018cites this paper
• Analysis of the microRNA transcriptome of Daphnia pulex during aging.

  2018cites this paper
• Novel approach for evaluating pharmaceuticals toxicity using Daphnia model: analysis of the mode of cytochrome P450-generated metabolite action after acetaminophen exposure.

  2018cites this paper
• Gamma radiation induces dose-dependent oxidative stress and transcriptional alterations in the freshwater crustacean Daphnia magna.

  2018cites this paper
• Dopamine synergizes with caffeine to increase the heart rate of Daphnia

  2018cites this paper
• Influence of maternal age on the effects of seleno-l-methionine in the model organism Daphnia pulex under standard and heat stress conditions.

  2018cites this paper
• rDNA Copy Number Change and Sequence Variation in Mutation Accumulation Lines of Daphnia pulex

  2018influential citation
• Invertebrate Model Species in AOP Development

  2018cites this paper
• The evolutionary role of epigenetic mechanisms : the adaptation of freshwater organisms to climate change

  2018cites this paper
• Novel resilience in response to revitalisation after exposure to lethal salinity causes differential reproductive success in an extremely plastic organism

  2018cites this paper
• Periconception in Physiology and Medicine

  2017cites this paper
• The Future of Environmental Epigenetics: Insights Using the Clonal Water Flea Model

  2017cites this paper
• Introduction: Second Edition

  2017cites this paper
• University of Birmingham Miniaturising acute toxicity and feeding rate measurements in Daphnia magna

  2017cites this paper
• Bi-directional effects of vitamin B12 and methotrexate on Daphnia magna fitness and genomic methylation

  2017cites this paper
• Miniaturising acute toxicity and feeding rate measurements in Daphnia magna.

  2017cites this paper
• Exploitation of Non-mammalian Model Organisms in Epigenetic Research.

  2017cites this paper
• Integrative assessment of systematic gene expression variation in response to osmotic shock and environmental toxicants

  2017cites this paper
• Environmental Toxicants and Unsaturated Fatty Acids Alter Toxicant Sensitivity and Allocation of Polar Lipids in Daphnia Magna

  2016cites this paper
• Daphnia in water quality biomonitoring - “omic” approaches

  2016cites this paper
• The effect of a low iron diet and early life methylmercury exposure in Daphnia pulex.

  2016cites this paper
• Toxicity of Zinc Dissolved In Saigon River to the Tropical Micro-Crustacean Daphnia Lumholtzi

  2016cites this paper
• Feasibility of planctomycetes as a nutritional or supplementary food source for Daphnia spp

  2016cites this paper
• Ecotoxicological Effects of Gold Nanoparticles and Microplastics in Daphnia magna

  2016cites this paper