Genotype‐based matching to correct for population stratification in large‐scale case‐control genetic association studies

No abstract is available for this paper.

• Publication year

  2009

• Venue

  Genetic Epidemiology

• Publication date

  2009-09-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1002/gepi.20403PMID 19170134PMCID PMC2732762
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• On the use of general control samples for genome-wide association studies: genetic matching highlights causal variants.

  2008influential reference
• A simple and improved correction for population stratification in case-control studies.

  2007cited by this paper
• A genome-wide association study identifies novel risk loci for type 2 diabetes

  2007cited by this paper
• A second generation human haplotype map of over 3.1 million SNPs

  2007cited by this paper
• A randomization test for controlling population stratification in whole-genome association studies.

  2007cited by this paper
• GENOME: a rapid coalescent-based whole genome simulator

  2007cited by this paper
• Genome-Wide Association Analysis Identifies Loci for Type 2 Diabetes and Triglyceride Levels

  2007cited by this paper
• Replication of Genome-Wide Association Signals in UK Samples Reveals Risk Loci for Type 2 Diabetes

  2007cited by this paper
• Principal components analysis corrects for stratification in genome-wide association studies

  2006cited by this paper
• A Computational Study of Cost Reoptimization for Min-Cost Flow Problems

  2006cited by this paper
• Optimal Full Matching and Related Designs via Network Flows

  2006cited by this paper
• Centralizing the non‐central chi‐square: a new method to correct for population stratification in genetic case‐control association studies

  2006cited by this paper
• High-resolution whole-genome association study of Parkinson disease.

  2005cited by this paper
• Mapping determinants of human gene expression by regional and genome-wide association

  2005cited by this paper
• Complement Factor H Polymorphism in Age-Related Macular Degeneration

  2005cited by this paper
• A note on exact tests of Hardy-Weinberg equilibrium.

  2005cited by this paper
• An algorithm to construct genetically similar subsets of families with the use of self-reported ethnicity information.

  2005cited by this paper
• Robustness of case-control studies of genetic factors to population stratification: magnitude of bias and type I error.

  2004cited by this paper
• K-means clustering via principal component analysis

  2004cited by this paper
• Full Matching in an Observational Study of Coaching for the SAT

  2004cited by this paper
• Assessing the impact of population stratification on genetic association studies

  2004cited by this paper
• DETECTING GENETIC ASSOCIATION IN CASE-CONTROL STUDIES USING SIMILARITY-BASED ASSOCIATION TESTS

  2002cited by this paper
• Association mapping in structured populations.

  2000cited by this paper
• Genomic Control for Association Studies

  1999influential reference
• Coalescents and genealogical structure under neutrality.

  1995cited by this paper
• RELAX-IV : a faster version of the RELAX code for solving minimum cost flow problems

  1994cited by this paper
• Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus (IDDM).

  1993cited by this paper
• A Characterization of Optimal Designs for Observational Studies

  1991influential reference
• Gene genealogies and the coalescent process.

  1990cited by this paper
• Properties of a neutral allele model with intragenic recombination.

  1983cited by this paper
• The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations.

  1969cited by this paper
• Population subdivision with respect to multiple alleles

  1969cited by this paper
• On the efficiency of matched pairs in Bernoulli trials

  1968cited by this paper
• Supporting Online Material Materials and Methods Figs. S1 to S8 Tables S1 to S10 References a Genome-wide Association Study of Type 2 Diabetes in Finns Detects Multiple Susceptibility Variants

  year unknowncited by this paper

• Determining population structure from k-mer frequencies

  2022cites this paper
• Rare variant association tests for ancestry-matched case-control data based on conditional logistic regression

  2022cites this paper
• Recommendations for Statistical Reporting in Cardiovascular Medicine: A Special Report From the American Heart Association.

  2021cites this paper
• Novel score test to increase power in association test by integrating external controls

  2020cites this paper
• The Effects of Single Nucleotide Polymorphisms in Cancer RNAi Therapies

  2020cites this paper
• Genetic Markers of Extreme Human Longevity

  2019cites this paper
• Editorial focus: understanding off-target effects as the key to successful RNAi therapy

  2019cites this paper
• Identification of genetic risk factors in the Chinese population implicates a role of immune system in Alzheimer’s disease pathogenesis

  2018cites this paper
• Polymorphisms in Pharmacogenetics of Personalized Cancer Therapy

  2017cites this paper
• Ancestry inference using principal component analysis and spatial analysis: a distance-based analysis to account for population substructure

  2017cites this paper
• The frequency of HLA alleles in the Romanian population

  2016cites this paper
• Principal Component Regression and Linear Mixed Model in Association Analysis of Structured Samples: Competitors or Complements?

  2015cites this paper
• Strategies to improve the performance of rare variant association studies by optimizing the selection of controls

  2015cites this paper
• Novel genetic matching methods for handling population stratification in genome-wide association studies

  2015cites this paper
• Extensive Genomic Variability of Knops Blood Group Polymorphisms Is Associated with Sickle Cell Disease in Africa

  2015cites this paper
• Assessing Threats to Inference with Simultaneous Sensitivity Analysis: The Case of US Supreme Court Oral Arguments*

  2015cites this paper
• Ancestry estimation and control of population stratification for sequence-based association studies

  2014cites this paper
• Characterization of normal facial features and their association with genes

  2014cites this paper
• Adjusting for Population Stratification in a Fine Scale With Principal Components and Sequencing Data

  2013cites this paper
• Adjustment for Population Stratification via Principal Components in Association Analysis of Rare Variants

  2013cites this paper
• Design of efficient and statistically powerful approaches for human genetics

  2013cites this paper
• Rare and Low Frequency Variant Stratification in the UK Population: Description and Impact on Association Tests

  2012cites this paper
• Stratification‐Score Matching Improves Correction for Confounding by Population Stratification in Case‐Control Association Studies

  2012cites this paper
• Manifold Learning for Human Population Structure Studies

  2012influential citation
• A hierarchical clustering algorithm based on density for data stratification

  2012cites this paper
• Optimal Matching with Minimal Deviation from Fine Balance in a Study of Obesity and Surgical Outcomes

  2012cites this paper
• hzAnalyzer: detection, quantification, and visualization of contiguous homozygosity in high-density genotyping datasets

  2011cites this paper
• Genetic association and gene-environment interaction: a new method for overcoming the lack of exposure information in controls.

  2011cites this paper
• Accounting for Population Stratification in Practice: A Comparison of the Main Strategies Dedicated to Genome-Wide Association Studies

  2011cites this paper
• Overview of techniques to account for confounding due to population stratification and cryptic relatedness in genomic data association analyses

  2011cites this paper
• Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe

  2011cites this paper
• Using principal components of genetic variation for robust and powerful detection of gene-gene interactions in case-control and case-only studies.

  2010cites this paper
• Clustering by genetic ancestry using genome-wide SNP data

  2010cites this paper
• Robust tests for matched case-control genetic association studies

  2010cites this paper
• Variance component model to account for sample structure in genome-wide association studies

  2010cites this paper
• Studying the Joint Effects of Population Stratification and Sampling in Case-Control Association Studies

  2010cites this paper
• Title Robust tests for matched case-control genetic associationstudies

  2010cites this paper
• Noise induced hypertension and prehypertension in Pakistan.

  2010cites this paper
• The Potential for Enhancing the Power of Genetic Association Studies in African Americans through the Reuse of Existing Genotype Data

  2010cites this paper
• Using ancestry matching to combine family‐based and unrelated samples for genome‐wide association studies

  2010cites this paper
• Replication in genome-wide association studies.

  2009cites this paper
• Genotype imputation.

  2009cites this paper
• Open Access Research Article Population Based Allele Frequencies of Disease Associated Polymorphisms in the Personalized Medicine Research Project

  year unknowncites this paper