Flexible and practical modeling of animal telemetry data: hidden Markov models and extensions.

No abstract is available for this paper.

• Publication year

  2012

• Venue

  Ecology

• Publication date

  2012-11-01

• Fields of study

  Biology, Medicine, Computer Science, Environmental Science

• Identifiers
  DOI 10.1890/11-2241.1PMID 23236905
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A general discrete‐time modeling framework for animal movement using multistate random walks

  2012cited by this paper
• On the application of mixed hidden Markov models to multiple behavioural time series

  2012cited by this paper
• Some applications of nonlinear and non-Gaussian state–space modelling by means of hidden Markov models

  2011cited by this paper
• Estimation methods for nonlinear state-space models in ecology

  2011cited by this paper
• Energy gains predict the distribution of plains bison across populations and ecosystems.

  2011cited by this paper
• Estimating animal behavior and residency from movement data

  2011cited by this paper
• Hidden Markov Models for Time Series – An Introduction Using R

  2011cited by this paper
• Hidden Markov models with arbitrary state dwell-time distributions

  2011cited by this paper
• Inference in hidden Markov models

  2010cited by this paper
• Classifying movement behaviour in relation to environmental conditions using hidden Markov models.

  2009influential reference
• State-space models of individual animal movement.

  2008cited by this paper
• Modeling loggerhead turtle movement in the Mediterranean: importance of body size and oceanography.

  2008cited by this paper
• Modeling Time Series of Animal Behavior by Means of a Latent‐State Model with Feedback

  2008cited by this paper
• Continuous-time correlated random walk model for animal telemetry data.

  2008influential reference
• Random walk models in biology

  2008cited by this paper
• Mixed Hidden Markov Models

  2007cited by this paper
• Robust hierarchical state-space models reveal diel variation in travel rates of migrating leatherback turtles.

  2006cited by this paper
• Prediction of wolf (Canis lupus) kill-sites using hidden Markov models

  2006cited by this paper
• Hidden Markov models for circular and linear-circular time series

  2006cited by this paper
• ROBUST STATE-SPACE MODELING OF ANIMAL MOVEMENT DATA

  2005cited by this paper
• EXTRACTING MORE OUT OF RELOCATION DATA: BUILDING MOVEMENT MODELS AS MIXTURES OF RANDOM WALKS

  2004influential reference
• Bayesian inference for Markov processes with diffusion and discrete components

  2003cited by this paper
• Estimating Hidden Semi-Markov Chains From Discrete Sequences

  2003influential reference

• Estimating the distance at which narwhal $(\textit{Monodon monoceros})$ respond to disturbance: a penalized threshold hidden Markov model

  2026cites this paper
• Movement behavior, space use and intraspecific interactions of cattle and horses: their role as mobile links in grassland restoration

  2026cites this paper
• Inferring behavioural states from tracking data with hidden Markov models – a validation study using GPS video-camera collars

  2026cites this paper
• Behavioural state inference from movement and environmental data using Markovian step selection functions

  2026cites this paper
• Ringed Seal (Pusa hispida) Haul‐Out Behavior and Emergence Timing in the Bering, Chukchi, and Beaufort Seas

  2026cites this paper
• Mapping activity of grazing cattle using commercial virtual fencing technology

  2025cites this paper
• Sociality helps mitigate anthropogenic risks: Evidence from elk crossing a major highway.

  2025cites this paper
• Open-source, environmentally dynamic machine learning models demonstrate behavior-dependent utilization of mixed-use landscapes by jaguars (Panthera onca)

  2025cites this paper
• Applying movement ecology models to comparative cognition experiments: a field test in hummingbirds

  2025cites this paper
• Rest to roam: behavioural adaptations of tigers in anthropogenically altered landscapes

  2025cites this paper
• The role of acoustic telemetry to assess the effects of offshore wind infrastructure on fish behaviour, populations and predation

  2025cites this paper
• The tortoise and the antilocaprid: adapting GPS tracking and terrain data to model wildlife walking functions

  2025cites this paper
• Putting the health in hidden Markov models: incorporating allostatic load indices into movement ecology analyses

  2025cites this paper
• Movement ecology and conservation of capuchin monkeys in pine plantation landscapes

  2025cites this paper
• Home range and activity budget in the Falkland Steamer Duck (Tachyeres brachypterus)

  2025cites this paper
• Proper account of auto-correlations improves decoding performances of state-space (semi) Markov models

  2025influential citation
• Impacts of infectious diseases on movement metrics in a large carnivore: Highly pathogenic avian influenza, leptospirosis, and pumas

  2025cites this paper
• European eel larvae are sensitive to vibration and light

  2025cites this paper
• An information theory framework for hierarchical path segmentation and analysis of animal movement

  2025cites this paper
• Grass carp (Ctenopharyngodon idella) movement states and backwater use can inform removal efforts

  2025cites this paper
• Horizontal and vertical movement ecology of the oceanic whitetip shark (Carcharhinus Longimanus) in French Polynesia

  2025influential citation
• The foraging distribution and habitat use of chick-rearing snow petrels from two colonies in Dronning Maud Land, Antarctica

  2025cites this paper
• Three-dimensional correlated random walks for animal movement and habitat selection

  2025cites this paper
• FInCH: Fast statistical inference for continuous‐time animal movement

  2025cites this paper
• Persistence of breeding philopatry and cultural memory of the Great Barrier Reef as a humpback whale breeding ground

  2025cites this paper
• Selección de hábitat

  2025cites this paper
• Scale dependence in hidden Markov models for animal movement

  2025influential citation
• Tensor-product interactions in Markov-switching models

  2025cites this paper
• An introduction to statistical models used to characterize species-habitat associations with animal movement data

  2025cites this paper
• Method selection and temporal scale greatly influence ecological inferences on estimated animal behavioral states

  2025cites this paper
• Exploratory Movements and Natal Dispersal of Gray Hawks (Buteo plagiatus) in South Texas, USA

  2025cites this paper
• Formula One: Racing Intelligence in the Age of AI

  2025cites this paper
• Female biased offspring sex ratios of eastern wild turkeys across the southeastern United States

  2025cites this paper
• Inferring activity patterns of aquatic animals from single‐receiver acoustic telemetry setups

  2025influential citation
• Efficient statistical inference of turning points in animal movement data

  2025cites this paper
• Movement ecology of a large ungulate following human abandonment of areas contaminated by the Fukushima Dai-ichi nuclear accident.

  2025cites this paper
• Exploring the adaptive behaviour and environmental acclimation of artificially-bred Chinese sturgeon (Acipenser sinensis) in semi-open marine environment: insights for endangered species conservation

  2024cites this paper
• Seasonal resource tracking and use of sea-ice foraging habitats by albatrosses and large petrels

  2024cites this paper
• Movement behavior in a dominant ungulate underlies successful adjustment to a rapidly changing landscape following megafire

  2024cites this paper
• Using multiple scales of movement to highlight risk–reward strategies of coyotes (Canis latrans) in mixed‐use landscapes

  2024cites this paper
• Behavioral state-dependent selection of roads by guanacos

  2024cites this paper
• The statistical building blocks of animal movement simulations

  2024cites this paper
• ExMove: An open-source toolkit for processing and exploring animal-tracking data in R.

  2024cites this paper
• Player Activity and Load Profiling with Hidden Markov Models: A Novel Application in Rugby League

  2024cites this paper
• Changes in daily activity patterns throughout the year in a free-living South American subterranean rodent (Ctenomys coludo)

  2024cites this paper
• Predicting fine-scale distributions and emergent spatiotemporal patterns from temporally dynamic step selection simulations

  2024influential citation
• Using lineups to evaluate goodness of fit of animal movement models

  2024cites this paper
• Hidden semi-Markov models with inhomogeneous state dwell-time distributions

  2024cites this paper
• Modelling individual variability in habitat selection and movement using integrated step‐selection analysis

  2024cites this paper
• Simultaneous estimation of the temporal and spatial extent of animal migration using step lengths and turning angles

  2024cites this paper
• An Information Theory Treatment of Animal Movement Tracks

  2024cites this paper
• Swimming and acoustic calling behavior attributed to Bryde’s whales in the central North Pacific

  2024cites this paper
• Decadal-scale variability and warming affect spring timing and forest growth across the western Great Lakes region

  2024cites this paper
• How to account for behavioral states in step-selection analysis: a model comparison

  2024cites this paper
• Validating hidden Markov models for seabird behavioural inference

  2024cites this paper
• Linking ringed seal foraging behaviour to environmental variability

  2024cites this paper
• Performance of five statistical methods to infer interactions among moving individuals in a predator–prey system

  2024cites this paper
• Impacts of habitat loss and fragmentation on seed dispersal by an Afrotropical bird community in an anthropogenic landscape: Insights from movement models

  2024cites this paper
• Advances in biologging can identify nuanced energetic costs and gains in predators

  2024cites this paper
• Combining habitat selection, behavioural states, and individual variation to predict fish spatial usage near a barrier

  2024cites this paper
• Movement in 3D: Novel Opportunities for Understanding Animal Behaviour and Space Use

  2024cites this paper
• An Information Theory Framework for Movement Path Segmentation and Analysis

  2024cites this paper
• Modeling eye gaze velocity trajectories using GANs with spectral loss for enhanced fidelity

  2024cites this paper
• Autoregressive Hidden Markov Models for High-Resolution Animal Movement Data

  2024cites this paper
• Strong Anomalous Diffusion for Free-Ranging Birds

  2024cites this paper
• Telemetry without collars: performance of fur- and ear-mounted satellite tags for evaluating the movement and behaviour of polar bears

  2024cites this paper
• Predator-prey space use and landscape features influence movement behaviors in a large-mammal community.

  2024cites this paper
• Az erdők bogarai: élőhelyváltozások hosszútávú hatásai futóbogár-együttesek szerkezetére, a közösségi szinttől az egyedi viselkedésig

  2024cites this paper
• Multiphasic movement and step-selection patterns of dispersed tigers in the central Indian landscape

  2024cites this paper
• Changes in movement, habitat use, and response to human disturbance accompany parturition events in bighorn sheep (Ovis canadensis)

  2023cites this paper
• A hierarchical modelling framework for estimating individual‐ and population‐level reproductive success from movement data

  2023cites this paper
• On Random Walk Models as a Baseline for Animal Movement in Three-Dimensional Space

  2023cites this paper
• Sine-skewed von Mises- and Lindley/Gumbel models as candidates for direction and distance in modelling animal movement

  2023cites this paper
• Title: Bridging the gap between movement data and connectivity analysis using the time-explicit

  2023cites this paper
• Bridging the gap between movement data and connectivity analysis using the time-explicit Step Selection Function (tSSF)

  2023cites this paper
• Modeling three-dimensional T-cell motility using clustering and hidden Markov models

  2023cites this paper
• Phase transitions of civil unrest across countries and time

  2023cites this paper
• Activity modulation and selection for forests help giant anteaters to cope with temperature changes

  2023cites this paper
• Assessing individual movement, habitat use, and behavior of non-breeding marine birds in relation to prey availability in the US Atlantic

  2023cites this paper
• Modelling activity patterns of wild animals - An application of the multiple discrete-continuous extreme value (MDCEV) model

  2023cites this paper
• Go Multivariate: Recommendations on Bayesian Multilevel Hidden Markov Models with Categorical Data

  2023cites this paper
• Crabs ride the tide: incoming tides promote foraging of Giant Mud Crab (Scylla serrata)

  2023cites this paper
• Accounting for behaviour in fine-scale habitat selection: A case study highlighting methodological intricacies.

  2023cites this paper
• An animal movement track segmentation framework for forecasting range adaptation under global change

  2023cites this paper
• A framework for improving treatment of uncertainty in offshore wind assessments for protected marine birds

  2023cites this paper
• How tracking technology is transforming animal ecology: epistemic values, interdisciplinarity, and technology-driven scientific change

  2023cites this paper
• Realising the promise of large data and complex models

  2023cites this paper
• Joint use of location and acceleration data reveals influences on transitions among habitats in wintering birds

  2023cites this paper
• Incorporating vertical dimensionality improves biological interpretation of hidden Markov model outputs

  2023cites this paper
• A Summer Heat Wave Reduced Activity, Heart Rate, and Autumn Body Mass in a Cold-Adapted Ungulate

  2023cites this paper
• Chronotypes-personality behavioural syndromes in wild marine fish

  2023cites this paper
• Decoding the internesting movements of marine turtles using a fine-scale behavioral state approach

  2023cites this paper
• Behavioural responses of fin whales to military mid-frequency active sonar

  2023cites this paper
• Minke whales change their swimming behavior with respect to their calling behavior, nearby conspecifics, and the environment in the central North Pacific

  2023cites this paper
• Rabies transmission in the Arctic: An agent-based model reveals the effects of broad-scale movement strategies on contact risk between Arctic foxes

  2023cites this paper
• LIES of omission: complex observation processes in ecology.

  2023cites this paper
• Inference on the state process of periodically inhomogeneous hidden Markov models for animal behavior

  2023cites this paper
• Flexible Modelling of Diel and Other Periodic Variation in Hidden Markov Models

  2023cites this paper
• How to account for behavioural states in step-selection analysis: a model comparison

  2023cites this paper
• Positioning aquatic animals with acoustic transmitters

  2023cites this paper