The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa.

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Molecular biology and evolution

• Publication date

  2005-05-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1093/MOLBEV/MSI102PMID 15703245
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Clann: investigating phylogenetic information through supertree analyses

  2005cited by this paper
• Phylogeny determined by protein domain content.

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• Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data.

  2005cited by this paper
• Bayesian inference of the metazoan phylogeny; a combined molecular and morphological approach.

  2005cited by this paper
• CLANN: Software for supertree analysis

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• Genome-scale phylogeny and the detection of systematic biases.

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• Does a tree–like phylogeny only exist at the tips in the prokaryotes?

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• PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)]

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• PHYLIP (Phylogeny Inference Package)

  2004cited by this paper
• Identification and comparative analysis of the RpL14 gene from Takifugu rubripes.

  2004cited by this paper
• Systematic searches for molecular synapomorphies in model metazoan genomes give some support for Ecdysozoa after accounting for the idiosyncrasies of Caenorhabditis elegans

  2004cited by this paper
• The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils?

  2004cited by this paper
• FusionDB: a database for in-depth analysis of prokaryotic gene fusion events

  2004cited by this paper
• Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species

  2004cited by this paper
• Genome-scale approaches to resolving incongruence in molecular phylogenies

  2003cited by this paper
• Mitochondria and hydrogenosomes are two forms of the same fundamental organelle.

  2003cited by this paper
• Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis.

  2003cited by this paper
• Rooting the Eukaryote Tree by Using a Derived Gene Fusion

  2002cited by this paper
• An Alternative Flavin-Dependent Mechanism for Thymidylate Synthesis

  2002cited by this paper
• The closest unicellular relatives of animals.

  2002cited by this paper
• Testing the new animal phylogeny: first use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes.

  2002cited by this paper
• TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

  2002cited by this paper
• Structural, functional, and evolutionary analysis of moeZ, a gene encoding an enzyme required for the synthesis of the Pseudomonas metabolite, pyridine-2,6-bis(thiocarboxylic acid)

  2002cited by this paper
• Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences

  2001cited by this paper
• Molecular phylogenetic analyses of the mitochondrial ADP-ATP carriers: The Plantae/Fungi/Metazoa trichotomy revisited

  2001cited by this paper
• Elongation factor 1-alpha sequences alone do not assist in resolving the position of the acoela within the metazoa.

  2001cited by this paper
• Phylogenetic utility and evidence for multiple copies of elongation factor-1alpha in the spider genus Habronattus (Araneae: Salticidae).

  2001cited by this paper
• MRBAYES: Bayesian inference of phylogenetic trees

  2001influential reference
• The Comparison of β-Thymosin Homologues Among Metazoa Supports an Arthropod-Nematode Clade

  2000cited by this paper
• Genome evolution. Gene fusion versus gene fission.

  2000cited by this paper
• Triploblastic relationships with emphasis on the acoelomates and the position of Gnathostomulida, Cycliophora, Plathelminthes, and Chaetognatha: a combined approach of 18S rDNA sequences and morphology.

  2000cited by this paper
• A kingdom-level phylogeny of eukaryotes based on combined protein data.

  2000cited by this paper
• The new animal phylogeny: reliability and implications.

  2000cited by this paper
• Enolase from Trypanosoma brucei, from the amitochondriate protist Mastigamoeba balamuthi, and from the chloroplast and cytosol of Euglena gracilis: pieces in the evolutionary puzzle of the eukaryotic glycolytic pathway.

  2000cited by this paper
• Hox genes in brachiopods and priapulids and protostome evolution

  1999cited by this paper
• A Search for the Origins of Animals and Fungi: Comparing and Combining Molecular Data

  1999cited by this paper
• Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins.

  1999cited by this paper
• Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi

  1999cited by this paper
• Evolutionary relationships among protozoa.

  1998cited by this paper
• Elongation factor-1 alpha occurs as two copies in bees: implications for phylogenetic analysis of EF-1 alpha sequences in insects.

  1998cited by this paper
• The position of arthropods in the animal kingdom: a search for a reliable outgroup for internal arthropod phylogeny.

  1998cited by this paper
• Large-scale taxonomic profiling of eukaryotic model organisms: a comparison of orthologous proteins encoded by the human, fly, nematode, and yeast genomes.

  1998cited by this paper
• Neomonada and the origin of animals and fungi.

  1998cited by this paper
• Evidence for a clade of nematodes, arthropods and other moulting animals

  1997cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997influential reference
• Complete nucleotide sequences of the genes encoding translation elongation factors 1 alpha and 2 from a microsporidian parasite, Glugea plecoglossi: implications for the deepest branching of eukaryotes.

  1996cited by this paper
• Evolutionary relationships of eukaryotic kingdoms

  1996cited by this paper
• Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family.

  1996cited by this paper
• Protein phylogeny of translation elongation factor EF-1α suggests microsporidians are extremely ancient eukaryotes

  1996cited by this paper
• CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

  1994influential reference
• Phylogenetic relationship of the kingdoms Animalia, Plantae, and Fungi, inferred from 23 different protein species.

  1994cited by this paper
• Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins.

  1993cited by this paper
• The rapid generation of mutation data matrices from protein sequences

  1992cited by this paper
• Molecular phylogeny of the kingdoms Animalia, Plantae, and Fungi.

  1989cited by this paper
• The neighbor-joining method: a new method for reconstructing phylogenetic trees.

  1987cited by this paper
• CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP

  1985cited by this paper

• Six-State Amino Acid Recoding is not an Effective Strategy to Offset Compositional Heterogeneity and Saturation in Phylogenetic Analyses

  2021cites this paper
• ECDYSOZOA

  2020cites this paper
• Phylo-evo-devo, tardigrades and insights into the evolution of segmentation

  2020influential citation
• Six-state amino acid recoding is not an effective strategy to offset the effects of compositional heterogeneity and saturation in phylogenetic analyses

  2019cites this paper
• A tree of life based on ninety-eight expressed genes conserved across diverse eukaryotic species

  2017cites this paper
• Phylogenomics

  2017cites this paper
• Current Understanding of Ecdysozoa and its Internal Phylogenetic Relationships.

  2017cites this paper
• Current understanding of Ecdysozoa and its internal phylogenetic 1 relationships 2 3

  2017cites this paper
• Sources of Error and Incongruence in Phylogenomic Analyses

  2017cites this paper
• Trichinella spiralis: Adaptation and parasitism.

  2016cites this paper
• Phyloproteomic Analysis of 11780 Six-Residue-Long Motifs Occurrences

  2015cites this paper
• Trichoplax and Placozoa: one of the crucial keys to understanding metazoan evolution

  2015cites this paper
• The early history of the metazoa—a paleontologist’s viewpoint

  2015cites this paper
• Morphology should not be forgotten in the era of genomics—a phylogenetic perspective

  2015cites this paper
• Phylogenetic and Evolutionary Concepts in Nematodes

  2014cites this paper
• [Early history of the Metazoa--a palaeontologist's viewpoint].

  2014cites this paper
• Quartet partitioning reveals hybrid origins of the Vertebrate

  2014cites this paper
• A transcriptome approach to ecdysozoan phylogeny.

  2014cites this paper
• Screening and purification of bioactive peptides with potential to activate the cholecystokinin receptor type 1

  2013cites this paper
• The Arthropoda: A Phylogenetic Framework

  2013cites this paper
• The Impact of Paralogy on Phylogenomic Studies – A Case Study on Annelid Relationships

  2013cites this paper
• Protein disorder in the centrosome correlates with complexity in cell types number.

  2012cites this paper
• The pericardium in the deuterostome Saccoglossus kowalevskii (Enteropneusta) develops from the ectoderm via schizocoely

  2011cites this paper
• Comparative performance of supertree algorithms in large data sets using the soapberry family (Sapindaceae) as a case study.

  2011cites this paper
• Higher-level metazoan relationships: recent progress and remaining questions

  2011cites this paper
• The CCK(-like) receptor in the animal kingdom: functions, evolution and structures.

  2011cites this paper
• Evolutionary and Paleobiochemical Analyses of Heme Peroxidases

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• Using data-display networks for exploratory data analysis in phylogenetic studies.

  2010cites this paper
• Deep Genomic-Scale Analyses of the Metazoa Reject Coelomata: Evidence from Single- and Multigene Families Analyzed Under a Supertree and Supermatrix Paradigm

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• Molecular approaches to the study of ecdysozoan evolution

  2010cites this paper
• Phylogeny of Animals: Genomes Have a Lot to Say

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• WHOLE GENOME COMPARISONS REVEALS A POSSIBLE CHIMERIC ORIGIN FOR A MAJOR METAZOAN ASSEMBLAGE

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• The nematode story: Hox gene loss and rapid evolution.

  2010cites this paper
• iGTP: A software package for large-scale gene tree parsimony analysis

  2010cites this paper
• Large-scale parsimony analysis of metazoan indels in protein-coding genes.

  2010cites this paper
• A new dimension in combining data? The use of morphology and phylogenomic data in metazoan systematics

  2010cites this paper
• Hox genes: studies from the 20th to the 21st century. Preface.

  2010cites this paper
• Current Approaches to Phylogenomic Reconstruction

  2010cites this paper
• A phylogenomic contribution to the eukaryotic tree of life

  2009cites this paper
• Bioinformatics for DNA Sequence Analysis

  2009cites this paper
• The origin and evolution of arthropods

  2009cites this paper
• Robustness of Topological Supertree Methods for Reconciling Dense Incompatible Data

  2009cites this paper
• Molecular phylogenetic analyses of Bryozoa, Brachiopoda, and Phoronida

  2009cites this paper
• Palaeontological and Molecular Evidence Linking Arthropods, Onychophorans, and other Ecdysozoa

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• Analysis of Rare Genomic Changes Does Not Support the Unikont–Bikont Phylogeny and Suggests Cyanobacterial Symbiosis as the Point of Primary Radiation of Eukaryotes

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• SeqVis: a tool for detecting compositional heterogeneity among aligned nucleotide sequences.

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• SuperTRI: A new approach based on branch support analyses of multiple independent data sets for assessing reliability of phylogenetic inferences.

  2009cites this paper
• Broadly sampled multigene trees of eukaryotes

  2008cites this paper
• Homoplasy in genome-wide analysis of rare amino acid replacements: the molecular-evolutionary basis for Vavilov's law of homologous series

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  2008cites this paper
• Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence.

  2008cites this paper
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• The phylogeny of the mammalian heme peroxidases and the evolution of their diverse functions

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• Discovery of six families of fungal defensin-like peptides provides insights into origin and evolution of the CSαβ defensins

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• Theoretical investigation of host defense strategy evolution and phylogenomic analyses of apicomplexan parasites

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• Phylogenetic position of Nemertea derived from phylogenomic data.

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• Adaptive eukaryote‐to‐eukaryote lateral gene transfer: stress‐related genes of algal origin in the closest unicellular relatives of animals

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• MultiPhyl: a high-throughput phylogenomics webserver using distributed computing

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• Phylogenetic relationships within the phylum Nematoda as revealed by ribosomal DNA, and their biological implications

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  2007cites this paper
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  2007cites this paper
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  2007cites this paper
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  2007cites this paper
• Robustness of supertree methods for reconciling dense incompatible data

  2007cites this paper
• A modern look at the Animal Tree of Life

  2007cites this paper
• The nematode–arthropod clade revisited: phylogenomic analyses from ribosomal protein genes misled by shared evolutionary biases

  2007influential citation
• SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics

  2007cites this paper
• Rare coding sequence changes are consistent with Ecdysozoa, not Coelomata.

  2007cites this paper
• Support for the Coelomata clade of animals from a rigorous analysis of the pattern of intron conservation.

  2007cites this paper
• Reconstructing the ancestral eukaryote: lessons from the past

  2007cites this paper
• A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals

  2007cites this paper
• Global diversity of nematodes (Nematoda) in freshwater

  2007cites this paper
• Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements.

  2007cites this paper
• Disordered regions in elongation factors EF1A in the three superkingdoms of life

  2007cites this paper
• Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects

  2007cites this paper
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  2007cites this paper
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  2007cites this paper
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  2007cites this paper
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  2007cites this paper
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  2007cites this paper
• Do we need many genes for phylogenetic inference?

  2007cites this paper
• The diversity of eukaryotes and the root of the eukaryotic tree.

  2007cites this paper
• Plastid endosymbiosis, genome evolution and the origin of green plants.

  2007cites this paper
• The problem of rooting rapid radiations.

  2007cites this paper
• Bushes in the Tree of Life

  2006cites this paper