Spatial preservation of nuclear chromatin architecture during three-dimensional fluorescence in situ hybridization (3D-FISH).

No abstract is available for this paper.

• Publication year

  2002

• Venue

  Experimental Cell Research

• Publication date

  2002-05-15

• Fields of study

  Biology, Medicine, Materials Science

• Identifiers
  DOI 10.1006/EXCR.2002.5513PMID 11978004
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Arrangements of macro- and microchromosomes in chicken cells

  2004cited by this paper
• Two-color fluorescence labeling of early and mid-to-late replicating chromatin in living cells

  2004cited by this paper
• Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells

  2004cited by this paper
• FISH : a practical approach

  2002cited by this paper
• FISH on three-dimensionally preserved nuclei

  2002cited by this paper
• Expression of alpha- and beta-globin genes occurs within different nuclear domains in haemopoietic cells.

  2001cited by this paper
• NUCLEAR ARCHITECTURE AND GENE REGULATION IN MAMMALIAN CELLS

  2001influential reference
• The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells.

  2001cited by this paper
• Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei.

  2000cited by this paper
• Chromosome territories, interchromatin domain compartment, and nuclear matrix: an integrated view of the functional nuclear architecture.

  2000cited by this paper
• Topology of double minutes (dmins) and homogeneously staining regions (HSRs) in nuclei of human neuroblastoma cell lines

  2000cited by this paper
• Visualization of gene activity in living cells

  2000cited by this paper
• High resolution analysis of interphase chromosome domains.

  2000cited by this paper
• A complete set of repeat-depleted, PCR-amplifiable, human chromosome-specific painting probes

  1999cited by this paper
• The 3D positioning of ANT2 and ANT3 genes within female X chromosome territories correlates with gene activity.

  1999cited by this paper
• Differences in the Localization and Morphology of Chromosomes in the Human Nucleus

  1999cited by this paper
• Handbook of Computer Vision and Applications: Volume 1: From Scenes to Images

  1999cited by this paper
• Quantitative assessment of the alteration of chromatin during the course of FISH procedures. Fluorescent in situ hybridization.

  1999cited by this paper
• Organization of early and late replicating DNA in human chromosome territories.

  1999cited by this paper
• Direct Imaging of DNA in Living Cells Reveals the Dynamics of Chromosome Formation

  1999cited by this paper
• Compartmentalization of interphase chromosomes observed in simulation and experiment.

  1999cited by this paper
• Spatial Relationship between Transcription Sites and Chromosome Territories

  1999cited by this paper
• Dynamic repositioning of genes in the nucleus of lymphocytes preparing for cell division.

  1999cited by this paper
• Spectral precision distance confocal microscopy for the analysis of molecular nuclear structure

  1999cited by this paper
• Structure and dynamics of human interphase chromosome territories in vivo

  1998cited by this paper
• Spatial distributions of early and late replicating chromatin in interphase chromosome territories.

  1998cited by this paper
• Removal of repetitive sequences from FISH probes using PCR-assisted affinity chromatography

  1997cited by this paper
• Association of transcriptionally silent genes with Ikaros complexes at centromeric heterochromatin.

  1997cited by this paper
• Three-dimensional analysis of the arrangement of compact chromatin in the nucleus of G0 rat lymphocytes

  1996cited by this paper
• Active and inactive genes localize preferentially in the periphery of chromosome territories

  1996cited by this paper
• Perichromatin fibrils are in situ forms of nascent transcripts.

  1994cited by this paper
• Role of chromosome territories in the functional compartmentalization of the cell nucleus.

  1993cited by this paper
• Evidence for a nuclear compartment of transcription and splicing located at chromosome domain boundaries

  1993cited by this paper
• Denaturation, renaturation, and loss of DNA during in situ hybridization procedures.

  1986cited by this paper

• Material-Induced Nuclear Deformation Controls Chromatin Architecture in Adipose Stem Cells.

  2026cites this paper
• Mature chromatin packing domains persist after RAD21 depletion in 3D

  2025cites this paper
• Nanoscale 3D DNA tracing in non-denatured cells resolves the Cohesin-dependent loop architecture of the genome in situ

  2025cites this paper
• Geometrically Encoded Positioning of Introns, Intergenic Segments, and Exons in the Human Genome

  2025cites this paper
• A multifaceted journey into higher-order chromatin organization: Insights from experimental and computational approaches.

  2025cites this paper
• Geometrically encoded positioning of introns, intergenic segments, and exons in the human genome

  2025cites this paper
• In-cell chromatin structure by Cryo-FIB and Cryo-ET

  2025cites this paper
• Interphase chromatin biophysics and mechanics: new perspectives and open questions.

  2024cites this paper
• Establishing immortalized brown and white preadipocyte cell lines from young and aged mice

  2024cites this paper
• Formamide denaturation of double-stranded DNA for fluorescence in situ hybridization (FISH) distorts nanoscale chromatin structure

  2024cites this paper
• Establishing of 3D-FISH on frozen section and its applying in chromosome territories analysis in Populus trichocarpa

  2024cites this paper
• Interplay of condensate material properties and chromatin heterogeneity governs nuclear condensate ripening

  2024cites this paper
• Artificial design of the genome: from sequences to the 3D structure of chromosomes.

  2024cites this paper
• Efficient and highly amplified imaging of nucleic acid targets in cellular and histopathological samples with pSABER

  2024cites this paper
• A guide to studying 3D genome structure and dynamics in the kidney

  2024influential citation
• Mechanomemory of nucleoplasm and RNA polymerase II after chromatin stretching by a microinjected magnetic nanoparticle force

  2024cites this paper
• ChromEMT: visualizing and reconstructing chromatin ultrastructure and 3D organization in situ

  2024cites this paper
• Chromatin packing domains persist after RAD21 depletion in 3D

  2024cites this paper
• Generation of densely labeled oligonucleotides for the detection of small genomic elements

  2024cites this paper
• The potential of ALFA-tag and tyramide-based fluorescence signal amplification to expand the CRISPR-based DNA imaging toolkit

  2024cites this paper
• Activity-Driven Phase Transition Causes Coherent Flows of Chromatin.

  2023cites this paper
• 融合通道层注意力机制的UNet的衍射极限荧光点检测和定位

  2023cites this paper
• Programmable peroxidase-assisted signal amplification enables flexible detection of nucleic acid targets in cellular and histopathological specimens

  2023cites this paper
• Nanoscale 3D DNA tracing in single human cells visualizes loop extrusion directly in situ

  2023cites this paper
• Elucidating the structure and function of the nucleus-The NIH Common Fund 4D Nucleome program.

  2023cites this paper
• Symmetry-based classification of forces driving chromatin dynamics.

  2022cites this paper
• Regulation of 3D Organization and Its Role in Cancer Biology

  2022cites this paper
• Differences in nanoscale organization of regulatory active and inactive human chromatin

  2022cites this paper
• Preparing Map of Chromosome Territory Distribution Frequency.

  2021cites this paper
• CBCR: A Curriculum Based Strategy For Chromosome Reconstruction

  2021cites this paper
• Understanding 3D Genome Organization and Its Effect on Transcriptional Gene Regulation Under Environmental Stress in Plant: A Chromatin Perspective

  2021influential citation
• A Dual-Color Tyr-FISH Method for Visualizing Genes/Markers on Plant Chromosomes to Create Integrated Genetic and Cytogenetic Maps

  2021cites this paper
• Possibility of Uncoding Structural Organization of Genome in Rice Research: Prospects and Approaches by 3D Genome Sequencing

  2021cites this paper
• Tracing DNA paths and RNA profiles in cultured cells and tissues with ORCA

  2021cites this paper
• FISH Going Meso-Scale: A Microscopic Search for Chromatin Domains

  2021cites this paper
• Plant 3D Chromatin Organization: Important Insights from Chromosome Conformation Capture Analyses of the Last 10 Years

  2021cites this paper
• Identification of decondensed large-scale chromatin regions by TSA-seq and their localization to a subset of chromatin domain boundaries

  2021cites this paper
• Differences in nanoscale organization of DNase I hypersensitive and insensitive chromatin in single human cells

  2021cites this paper
• New Data on Organization and Spatial Localization of B-Chromosomes in Cell Nuclei of the Yellow-Necked Mouse Apodemus flavicollis

  2021cites this paper
• Alpha Satellite Insertion Close to an Ancestral Centromeric Region

  2021cites this paper
• Super-resolution visualization and modeling of human chromosomal regions reveals cohesin-dependent loop structures

  2021cites this paper
• Single‐cell imaging of genome organization and dynamics

  2021cites this paper
• Alpha satellite insertions and the evolutionary landscape of centromeres 1

  2021cites this paper
• The 3D Genome: From Structure to Function

  2021cites this paper
• Capturing Chromosome Conformation: Methods and Protocols

  2021cites this paper
• Visualization of loop extrusion by DNA nanoscale tracing in single human cells

  2021cites this paper
• Artificial intelligence technologies empowering identification of novel diagnostic molecular markers in gastric cancer

  2021cites this paper
• In situ genome sequencing resolves DNA sequence and structure in intact biological samples

  2020cites this paper
• QChromosomeVisualizer: a new tool for 3D visualization of long simulations of polymer-like chromosome models.

  2020cites this paper
• Role of the nuclear membrane protein Emerin in front-rear polarity of the nucleus

  2020cites this paper
• Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization

  2020cites this paper
• Ultrastructural Visualization of 3D Chromatin Folding Using Serial Block-Face Scanning Electron Microscopy and In Situ Hybridization (3D-EMISH)

  2020cites this paper
• Functional organization of the maternal and paternal human 4D Nucleome

  2020cites this paper
• Multiplexed imaging of nucleome architectures in single cells of mammalian tissue

  2020cites this paper
• Advances in Chromatin Imaging at Kilobase-Scale Resolution.

  2020cites this paper
• The Role of RNA Polymerase II Contiguity and Long-Range Interactions in the Regulation of Gene Expression in Human Pluripotent Stem Cells

  2019cites this paper
• Genomic Instability in Cancer II: 4N-Skewed (90°) Reductive Division via Fragile Sites to Fitness Increase for Solid and Hematological Cancer Beginnings

  2019cites this paper
• Multiplexed imaging of nucleome architectures in single cells of mammalian tissue

  2019cites this paper
• Methods for mapping 3D chromosome architecture

  2019cites this paper
• The Role of Protein Occupancy in DNA Compartmentalization

  2019cites this paper
• HiCeekR: A Novel Shiny App for Hi-C Data Analysis

  2019cites this paper
• Chromosome positioning in interphase nuclei of hematopoietic stem cell and myeloid precursor

  2018cites this paper
• Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling

  2018cites this paper
• CENP-B dynamics at centromeres is regulated by a SUMOylation/ubiquitination and proteasomal-dependent degradation mechanism involving the SUMO-targeted ubiquitin E3 ligase RNF4

  2018cites this paper
• Programming molecular behavior: development and applications of autonomous DNA synthesis cascades

  2018cites this paper
• Comparison of spatial chromosomal organization between bone marrow and peripheral blood in acute myeloid leukemia.

  2018cites this paper
• Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells

  2018cites this paper
• Investigation of Spatial Organization of Chromosome Territories in Chromosome Exchange Aberrations After Ionizing Radiation Exposure

  2018cites this paper
• An Application-Directed, Versatile DNA FISH Platform for Research and Diagnostics.

  2018cites this paper
• Three-dimensional chromatin packing and positioning of plant genomes

  2018cites this paper
• Fluorescent In Situ Hybridization Techniques in Pathology: Principle, Technique and Applications

  2018cites this paper
• SABER enables highly multiplexed and amplified detection of DNA and RNA in cells and tissues

  2018influential citation
• OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes

  2018cites this paper
• SpotLearn: Convolutional Neural Network for Detection of Fluorescence In Situ Hybridization (FISH) Signals in High-Throughput Imaging Approaches.

  2017cites this paper
• Capturing Chromosome Structural Properties From Their Spatial and Temporal Fluctuations

  2017cites this paper
• Nuclear orientation patterns for mouse chromosome 11 in normal B lymphocytes and during plasmacytoma development

  2017cites this paper
• Draft Spatial organization of fibroblast and spermatocyte nuclei with different B chromosome content in Korean field mouse Apodemus peninsulae

  2017influential citation
• 3D modeling of chromatin structure: is there a way to integrate and reconcile single cell and population experimental data?

  2017cites this paper
• A tissue-specific self-interacting chromatin domain forms independently of enhancer-promoter interactions

  2017cites this paper
• Genomic properties of chromosomal bands are linked to evolutionary rearrangements and new centromere formation in primates

  2017cites this paper
• Dynamics of epigenetic memory and chromosomal organization in gene regulation

  2017cites this paper
• Spatial organization of fibroblast and spermatocyte nuclei with different B-chromosome content in Korean field mouse, Apodemus peninsulae (Rodentia, Muridae).

  2017cites this paper
• Super‐resolution structure of DNA significantly differs in buccal cells of controls and Alzheimer's patients

  2017influential citation
• Super-resolution imaging of a 2.5 kb non-repetitive DNA in situ in the nuclear genome using molecular beacon probes

  2017influential citation
• OligoMiner: A rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes

  2017cites this paper
• Put your 3D glasses on: plant chromatin is on show.

  2016cites this paper
• Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program

  2016cites this paper
• Closing the loop: 3C versus DNA FISH

  2016cites this paper
• Tagged Chromosomal Insertion Site System: A Method to Study Lamina-Associated Chromatin.

  2016cites this paper
• FISH Is in the Limelight Again As More Than a Cytogenetical Technique for Metaphase Chromosomes

  2016cites this paper
• Cryotechniques and Freeze-Substitution for Immunostaining of Intranuclear Antigens and Fluorescence In Situ Hybridization

  2016cites this paper
• Spatial organization of chromatin domains and compartments in single chromosomes

  2016cites this paper
• Identification of Neuroblastoma Subgroups Based on Three-Dimensional Telomere Organization12

  2016cites this paper
• Gene-rich chromosomal regions are preferentially localized in the lamin B deficient nuclear blebs of atypical progeria cells

  2015cites this paper
• Measuring murine chromosome orientation in interphase nuclei

  2015cites this paper
• A new classification of interphase nuclei based on spatial organizations of chromosome 8 and 21 for t(8;21) (q22;q22) acute myeloid leukemia by three-dimensional fluorescence in situ hybridization.

  2015cites this paper
• MYCN overexpression is associated with unbalanced copy number gain, altered nuclear location, and overexpression of chromosome arm 17q genes in neuroblastoma tumors and cell lines

  2015cites this paper
• Ultrastructural cytochemistry as a tool for studying transcriptional mechanisms

  2015cites this paper
• Three-dimensional super-resolution microscopy of the inactive X chromosome territory reveals a collapse of its active nuclear compartment harboring distinct Xist RNA foci

  2014cites this paper
• Distinct nuclear orientation patterns for mouse chromosome 11 in normal B lymphocytes

  2014cites this paper