Current updates on computer aided protein modeling and designing.

No abstract is available for this paper.

• Publication year

  2016

• Venue

  International Journal of Biological Macromolecules

• Publication date

  2016-04-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1016/j.ijbiomac.2015.12.072PMID 26730484
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2016cited by this paper
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  2015cited by this paper
• Molecular dynamics simulations.

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  2010cited by this paper
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• MCCE2: Improving protein pKa calculations with extensive side chain rotamer sampling

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• Fully Automated Molecular Mechanics Based Induced Fit Protein-Ligand Docking Method

  2008cited by this paper
• SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling

  2008cited by this paper
• Molecular dynamics simulations.

  2008cited by this paper
• Crystal structure of the novel complex formed between zinc alpha2-glycoprotein (ZAG) and prolactin-inducible protein (PIP) from human seminal plasma.

  2008cited by this paper
• Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection

  2008cited by this paper
• Analysis of Conformational Changes during Activation of Protein Kinase Pak2 by Amide Hydrogen/Deuterium Exchange*

  2008cited by this paper
• A fast and accurate computational approach to protein ionization

  2008cited by this paper
• Using the isotropic periodic sum method to calculate long-range interactions of heterogeneous systems.

  2008cited by this paper
• The protein folding problem.

  2008cited by this paper
• Radius of gyration as an indicator of protein structure compactness

  2008cited by this paper
• [Radius of gyration is indicator of compactness of protein structure].

  2008cited by this paper
• Structural Model of Human PSA: A Target for Prostate Cancer Therapy

  2007cited by this paper
• The pH-dependent conformational states of kyotorphin: a constant-pH molecular dynamics study.

  2007cited by this paper
• Relating destabilizing regions to known functional sites in proteins

  2007cited by this paper
• Modeling mutations in protein structures

  2007cited by this paper
• Comparison of protein active site structures for functional annotation of proteins and drug design

  2006cited by this paper
• Free Energy Calculations in Biological Systems. How Useful Are They in Practice

  2006cited by this paper
• Physically realistic homology models built with ROSETTA can be more accurate than their templates.

  2006cited by this paper
• Molecular dynamics: survey of methods for simulating the activity of proteins.

  2006cited by this paper
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• Comparative modelling of protein structure and its impact on microbial cell factories

  2005cited by this paper
• Slow folding of a three-helix protein via a compact intermediate.

  2005cited by this paper
• Loss of protein structure stability as a major causative factor in monogenic disease.

  2005cited by this paper
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  2005cited by this paper
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  2005cited by this paper
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  2005cited by this paper
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  2005cited by this paper
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  2005cited by this paper
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  2005cited by this paper
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  2004cited by this paper
• Docking and scoring in virtual screening for drug discovery: methods and applications

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  2003cited by this paper
• The relationship between thermal stability and pH optimum studied with wild-type and mutant Trichoderma reesei cellobiohydrolase Cel7A.

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• Modeller: generation and refinement of homology-based protein structure models.

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• SWISS-MODEL: an automated protein homology-modeling server

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• Simulating proteins at constant pH: An approach combining molecular dynamics and Monte Carlo simulation

  2002cited by this paper
• Geno3D: automatic comparative molecular modelling of protein

  2002cited by this paper

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