Coping with copper: legacy effect of copper on potential activity of soil bacteria following a century of exposure.

No abstract is available for this paper.

• Publication year

  2016

• Venue

  FEMS Microbiology Ecology

• Publication date

  2016-11-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1093/femsec/fiw175PMID 27543319
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Interaction between pH and Cu toxicity on fungal and bacterial performance in soil

  2016cited by this paper
• Metagenomes provide valuable comparative information on soil microeukaryotes.

  2016cited by this paper
• gplots: Various R Programming Tools for Plotting Data

  2015cited by this paper
• The extent of functional redundancy changes as species’ roles shift in different environments

  2015cited by this paper
• Salivary markers of oxidative stress in oral diseases

  2015cited by this paper
• Metagenomics of extreme environments.

  2015cited by this paper
• Adaptation of soil microbial community structure and function to chronic metal contamination at an abandoned Pb-Zn mine.

  2015influential reference
• Bacterial communities associated with four ctenophore genera from the German Bight (North Sea).

  2015cited by this paper
• Field-based evidence for consistent responses of bacterial communities to copper contamination in two contrasting agricultural soils

  2015cited by this paper
• Invasive dreissenid mussels and benthic algae in Lake Michigan: characterizing effects on sediment bacterial communities.

  2015cited by this paper
• The long-term adaptation of bacterial communities in metal-contaminated sediments: a metaproteogenomic study.

  2015cited by this paper
• Simultaneous Loss of Soil Biodiversity and Functions along a Copper Contamination Gradient: When Soil Goes to Sleep

  2014influential reference
• R: A language and environment for statistical computing.

  2014influential reference
• Soil Acidobacterial 16S rRNA Gene Sequences Reveal Subgroup Level Differences between Savanna-Like Cerrado and Atlantic Forest Brazilian Biomes

  2014cited by this paper
• Cover crops influence soil microorganisms and phytoextraction of copper from a moderately contaminated vineyard.

  2014cited by this paper
• Mechanisms of copper homeostasis in bacteria

  2013cited by this paper
• The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

  2013cited by this paper
• UPARSE: highly accurate OTU sequences from microbial amplicon reads

  2013influential reference
• Cultivation and characterization of thermophilic Nitrospira species from geothermal springs in the US Great Basin, China, and Armenia.

  2013cited by this paper
• Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction.

  2013cited by this paper
• Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

  2013cited by this paper
• Loss in microbial diversity affects nitrogen cycling in soil

  2013cited by this paper
• Insights into the resistance and resilience of the soil microbial community.

  2013cited by this paper
• Abundance and diversity of culturable Pseudomonas constitute sensitive indicators for adverse long-term copper impacts in soil

  2013cited by this paper
• Long-term copper application in an organic vineyard modifies spatial distribution of soil micro-organisms

  2013cited by this paper
• Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

  2013cited by this paper
• rioja: Analysis of Quaternary Science Data

  2012cited by this paper
• Copper in Horticulture

  2012cited by this paper
• Environmental Factors Affect Acidobacterial Communities below the Subgroup Level in Grassland and Forest Soils

  2012cited by this paper
• Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

  2012cited by this paper
• Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups

  2012cited by this paper
• How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

  2012cited by this paper
• Soil microbial and physical properties and their relations along a steep copper gradient

  2012cited by this paper
• mvabund– an R package for model‐based analysis of multivariate abundance data

  2012influential reference
• Selection for Cu-Tolerant Bacterial Communities with Altered Composition, but Unaltered Richness, via Long-Term Cu Exposure

  2012influential reference
• Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.

  2011cited by this paper
• Effects of digestate from anaerobic fermented cattle slurry and plant materials on soil microbiota and fertility

  2011cited by this paper
• Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

  2011cited by this paper
• A single application of Cu to field soil has long-term effects on bacterial community structure, diversity, and soil processes.

  2010cited by this paper
• Copper Impacts on Corn, Soil Extractability, and the Soil Bacterial Community

  2010cited by this paper
• Extent of copper tolerance and consequences for functional stability of the ammonia‐oxidizing community in long‐term copper‐contaminated soils

  2010cited by this paper
• A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

  2010cited by this paper
• The ecological coherence of high bacterial taxonomic ranks

  2010cited by this paper
• Microbial community structure of vineyard soils with different pH and copper content

  2010cited by this paper
• Development of pollution-induced community tolerance is linked to structural and functional resilience of a soil bacterial community following a five-year field exposure to copper

  2010cited by this paper
• QIIME allows analysis of high-throughput community sequencing data

  2010cited by this paper
• Cu exposure under field conditions coselects for antibiotic resistance as determined by a novel cultivation-independent bacterial community tolerance assay.

  2010cited by this paper
• Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree.

  2009cited by this paper
• An inter-laboratory comparison of multi-enzyme and multiple substrate-induced respiration assays to assess method consistency in soil monitoring

  2009cited by this paper
• FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

  2009cited by this paper
• Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

  2009cited by this paper
• Mapping field-scale spatial patterns of size and activity of the denitrifier community.

  2009cited by this paper
• PyNAST: a flexible tool for aligning sequences to a template alignment

  2009cited by this paper
• Assessment of bacterial community structure in a long-term copper-polluted ex-vineyard soil.

  2008cited by this paper
• Evidence for bioavailable copper-dissolved organic matter complexes and transiently increased copper bioavailability in manure-amended soils as determined by bioluminescent bacterial biosensors.

  2008cited by this paper
• Copper dynamics and impact on microbial communities in soils of variable organic status.

  2008cited by this paper
• Toward an ecological classification of soil bacteria.

  2007cited by this paper
• Transcriptomic Responses of Bacterial Cells to Sublethal Metal Ion Stress

  2007cited by this paper
• Response to Comment by Volkov et al. on "Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil"

  2006cited by this paper
• Copper inhibition of soil organic matter decomposition in a seventy‐year field exposure

  2006cited by this paper
• Bioavailability and toxicity of soil particle‐associated copper as determined by two bioluminescent Pseudomonas fluorescens biosensor strains

  2006cited by this paper
• Pvclust: an R package for assessing the uncertainty in hierarchical clustering

  2006cited by this paper
• Decreased abundance and diversity of culturable Pseudomonas spp. populations with increasing copper exposure in the sugar beet rhizosphere.

  2006cited by this paper
• Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

  2006influential reference
• Effect of a copper gradient on plant community structure

  2006cited by this paper
• Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction.

  2005cited by this paper
• Metal Toxicity Affects Fungal and Bacterial Activities in Soil Differently

  2004cited by this paper
• A Rapid Microtiter Plate Method To Measure Carbon Dioxide Evolved from Carbon Substrate Amendments so as To Determine the Physiological Profiles of Soil Microbial Communities by Using Whole Soil

  2003influential reference
• Changes in the succession and diversity of protozoan and microbial populations in soil spiked with a range of copper concentrations

  2003cited by this paper
• Effects of copper amendment on the bacterial community in agricultural soil analyzed by the T-RFLP technique.

  2003cited by this paper
• Predicting changes in community composition and ecosystem functioning from plant traits: revisiting the Holy Grail

  2002cited by this paper
• Toxicity assessment of 255 chemicals to pure cultured nitrifying bacteria using biosensor.

  2002cited by this paper
• Rhizosphere effects on microbial community structure and dissipation and toxicity of polycyclic aromatic hydrocarbons (PAHs) in spiked soil.

  2001cited by this paper
• PAST: PALEONTOLOGICAL STATISTICAL SOFTWARE PACKAGE FOR EDUCATION AND DATA ANALYSIS

  2001influential reference
• rRNA Operon Copy Number Reflects Ecological Strategies of Bacteria

  2000cited by this paper
• Toxicity of heavy metals to microorganisms and microbial processes in agricultural soils: a review

  1998cited by this paper
• Acidimicrobium ferrooxidans gen. nov., sp. nov.: mixed-culture ferrous iron oxidation with Sulfobacillus species.

  1996cited by this paper
• Understanding cellular responses to toxic agents: a model for mechanism-choice in bacterial metal resistance

  1995cited by this paper
• Effects of heavy metals in soil on microbial processes and populations (a review)

  1989cited by this paper
• Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil

  year unknowncited by this paper

• The effects of olive orchard diversifications on greenhouse gas emissions and its influencing factors

  2026cites this paper
• Copper and synthetic pesticides are major drivers of soil bacterial and fungal communities

  2026cites this paper
• Microbial diversity at remediated former gold and copper mines and the metal tolerance of indigenous microbial strains

  2025cites this paper
• Micronutrient deficiency reshapes plant-microbe interaction networks: unraveling microbial community dynamics and functional adaptability in a sterile system

  2025cites this paper
• Biofilter technology as an efficient solution for disposing pesticide-contaminated wastewater in viticulture and fruit growing.

  2025cites this paper
• The role of Arbuscular Mycorrhizal Fungi in abiotic stress management in viticulture under climatic shifts

  2025cites this paper
• Copper-based fungicide application shifts the soil bacterial community structure and the soil nitrogen cycle

  2025influential citation
• Long-term effects of 100 years of vineyard-to-apple orchard conversion on soil structure, chemistry, and biodiversity

  2025cites this paper
• High levels of cadmium altered soil archaeal activity, assembly, and co-occurrence network in volcanic areas.

  2024cites this paper
• The regulation effect of preventing soil nitrogen loss using microbial quorum sensing inhibitors.

  2024cites this paper
• DNA metabarcoding reveals the impact of Cu2+ on soil cercozoan diversity.

  2024cites this paper
• Impacts of Legacy and Contemporary Nitrogen Inputs on N2O and CO2 Emissions in Miscanthus and Maize Cultivated Soils

  2024cites this paper
• Organic matter mitigates biotic impact of copper in fruit orchard soil.

  2024cites this paper
• Rich nutrition decreases the concentration of metals in Chaeturichthys stigmatias.

  2024cites this paper
• Advancing diabetic wound care: The role of copper-containing hydrogels

  2024cites this paper
• Unveiling Dissolution Kinetics of CuO Nanofertilizer Using Bio-Based Ionic Liquids Envisaging Controlled Use Efficiency for Sustainable Agriculture

  2024cites this paper
• Can heavy metal pollution stress reduce microbial carbon-use efficiencies?

  2024cites this paper
• Copper-based nanomaterials: Opportunities for sustainable agriculture.

  2024cites this paper
• Enrichment of biofertilizer-type hydrogen-oxidizing bacteria on urea containing Cu(II).

  2023cites this paper
• Application of the Aliivibrio fischeri bacterium bioassay for assessing single and mixture effects of antibiotics and copper.

  2023cites this paper
• Shotgun Metagenomics Reveals Impacts of Copper and Water Heater Anodes on Pathogens and Microbiomes in Hot Water Plumbing Systems

  2023cites this paper
• Response of bacterial communities to the application of sewage sludge biochar and Penicillium aculeatum in rhizosphere and bulk soil of wheat

  2023cites this paper
• Soil aggregates affect the legacy effect of copper pollution on the microbial communities

  2023cites this paper
• Biotechnological potential of Bacillus sp. S26 for alleviation of abiotic and biotic stresses in vine

  2023cites this paper
• Effects of copper contamination on N cycling microbial guilds and plant performance in two contrasting grassland soils

  2023cites this paper
• Long-term immersion of compostable plastics in marine aquarium: Microbial biofilm evolution and polymer degradation.

  2023cites this paper
• Effect on microbial communities in apple orchard soil when exposed short-term to climate change abiotic factors and different orchard management practices.

  2023cites this paper
• Differential responses of soil nirS- and nirK-type denitrifying microbial communities to long-term application of biogas slurry in a paddy soil

  2023cites this paper
• Influence of sewage sludge stabilization method on microbial community and the abundance of antibiotic resistance genes.

  2022cites this paper
• From rivers to marine environments: A constantly evolving microbial community within the plastisphere.

  2022cites this paper
• Abundant microbial communities act as more sensitive bio-indicators for ecological evaluation of copper mine contamination than rare taxa in river sediments.

  2022cites this paper
• Importance of substrate quality and clay content on microbial extracellular polymeric substances production and aggregate stability in soils

  2022cites this paper
• Evaluation of environment by microbial sensors

  2022cites this paper
• Microbial profile of T-shirts after a fitness session of Chinese students

  2022cites this paper
• Bioremediation of copper in sediments from a constructed wetland ex situ with the novel bacterium Cupriavidus basilensis SRS

  2022cites this paper
• Soil and fine root-associated microbial communities are niche dependent and influenced by copper fungicide treatment during tea plant cultivation

  2022cites this paper
• Dispersal Limitation Plays Stronger Role in the Community Assembly of Fungi Relative to Bacteria in Rhizosphere Across the Arable Area of Medicinal Plant

  2021cites this paper
• Overview of the Role of Nitrogen in Copper Pollution and Bioremediation Mediated by Plant–Microbe Interactions

  2021cites this paper
• The effect of early probiotic exposure on the preterm infant gut microbiome development

  2021cites this paper
• Whole Genome-Based Characterization of Listeria monocytogenes Isolates Recovered From the Food Chain in South Africa

  2021cites this paper
• Quorum Quenching in copper-tolerant Papiliotrema laurentii strains

  2021cites this paper
• Evolutionary epidemiology consequences of trait-dependent control of heterogeneous parasites

  2021cites this paper
• Persistence and resistance: Survival mechanisms of Candidatus Dormibacterota from nutrient poor Antarctic soils.

  2021cites this paper
• Temporal oral microbiome changes with brushing in children with cleft lip and palate

  2021cites this paper
• Assessing the Involvement of Selected Phenotypes of Pseudomonas simiae PICF7 in Olive Root Colonization and Biological Control of Verticillium dahliae

  2021cites this paper
• Effects of copper and florfenicol on nirS- and nirK-type denitrifier communities and related antibiotic resistance in vegetable soils.

  2021cites this paper
• Geochemical and microbial characteristics of seepage water and mineral precipitates in a radwaste disposal facility impacted by seawater intrusion and high alkalinity.

  2021cites this paper
• Ecotoxicity of copper input and accumulation for soil biodiversity in vineyards

  2021influential citation
• Assessment of the risks of copper- and zinc oxide-based nanoparticles used in Vigna radiata L. culture on food quality, human nutrition and health

  2021cites this paper
• Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes

  2021cites this paper
• Excess copper promotes catabolic activity of gram-positive bacteria and resistance of gram-negative bacteria but inhibits fungal community in soil

  2021influential citation
• Manure management and soil biodiversity: Towards more sustainable food systems in the EU

  2021cites this paper
• The Microbiology of Metal Mine Waste: Bioremediation Applications and Implications for Planetary Health

  2021cites this paper
• Soil Mycobiome Is Shaped by Vegetation and Microhabitats: A Regional-Scale Study in Southeastern Brazil

  2021cites this paper
• Compatibility of X-ray computed tomography with plant gene expression profiling, rhizosphere bacterial community composition and enzyme activity analyses.

  2020cites this paper
• Selection and propagation of IncP conjugative plasmids following long-term anthropogenic metal pollution in river sediments.

  2020cites this paper
• Dissemination and conservation of cadmium and arsenic resistance determinants in Listeria and other Gram‐positive bacteria

  2020cites this paper
• Responses of a semi-natural grassland community of tropical region to elevated ozone: An assessment of soil dynamics and biomass accumulation.

  2020cites this paper
• Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms.

  2020cites this paper
• Conjugative dissemination of plasmids in rapid sand filters: a trojan horse strategy to enhance pesticide degradation in groundwater treatment

  2020cites this paper
• Fungal community shifts in soils with varied cover crop treatments and edaphic properties

  2020cites this paper
• The T-shirt microbiome is distinct between individuals and shaped by washing and fabric type.

  2020cites this paper
• Assessment of soil fertility and potato crop nutrient status in central and eastern highlands of Kenya

  2020cites this paper
• Taxonomic and functional analysis of soil microbial communities in a mining site across a metal(loid) contamination gradient

  2020cites this paper
• Cadmium and Copper Cross-Tolerance. Cu+ Alleviates Cd2 + Toxicity, and Both Cations Target Heme and Chlorophyll Biosynthesis Pathway in Rubrivivax gelatinosus

  2020cites this paper
• Prokaryotic Community Composition and Extracellular Polymeric Substances Affect Soil Microaggregation in Carbonate Containing Semiarid Grasslands

  2020cites this paper
• Additive effects of metal excess and superoxide, a highly toxic mixture in bacteria

  2020cites this paper
• Increasing the copper sensitivity of microorganisms by restricting iron supply, a strategy for bio‐management practices

  2020cites this paper
• Indicators for assessment of soil quality: a mini-review

  2020cites this paper
• A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination.

  2020cites this paper
• Effect of heavy metal-induced stress on two extremophilic microbial communities from Caviahue-Copahue, Argentina.

  2020cites this paper
• Exploring microbial determinants of apple replant disease (ARD): A microhabitat approach under split-root design.

  2020cites this paper
• Investigating the Modes of Action of the Antimicrobial Chalcones BC1 and T9A

  2020cites this paper
• Dose-dependent Effect of Biochar as Soil Amendment on Reducing Copper Phytotoxicity and Mobility

  2020cites this paper
• Microbial diversity and activity assessment in a 100-year-old lead mine.

  2020cites this paper
• Recent advances in exploring the heavy metal(loid) resistant microbiome

  2020cites this paper
• Assessment of biochar and zero-valent iron for in-situ remediation of chromated copper arsenate contaminated soil.

  2019cites this paper
• Copper alters the physiology of tomato rhizospheric isolates of Papiliotrema laurentii

  2019cites this paper
• Developing a tool set to investigate antimicrobial mode of action in a phytopathogen

  2019influential citation
• Tailings microbial community profile and prediction of its functionality in basins of tungsten mine

  2019cites this paper
• Are secondary forests second-rate? Comparing peatland greenhouse gas emissions, chemical and microbial community properties between primary and secondary forests in Peninsular Malaysia.

  2019cites this paper
• Enhanced tomato plant growth in soil under reduced P supply through microbial inoculants and microbiome shifts.

  2019cites this paper
• Heavy metal hypertolerant eukaryotic aldehyde dehydrogenase isolated from metal contaminated soil by metatranscriptomics approach.

  2019cites this paper
• Foliar Application of Vegetal-Derived Bioactive Compounds Stimulates the Growth of Beneficial Bacteria and Enhances Microbiome Biodiversity in Lettuce

  2019cites this paper
• Bacterial and protozoan dynamics upon thawing and freezing of an active layer permafrost soil

  2019cites this paper
• Potential feedback mediated by soil microbiome response to warming in a glacier forefield

  2019cites this paper
• The Microbiome Stress Project: Toward a Global Meta-Analysis of Environmental Stressors and Their Effects on Microbial Communities

  2019cites this paper
• The plastisphere in marine ecosystem hosts potential specific microbial degraders including Alcanivorax borkumensis as a key player for the low-density polyethylene degradation.

  2019cites this paper
• Construction of Simplified Microbial Consortia to Degrade Recalcitrant Materials Based on Enrichment and Dilution-to-Extinction Cultures

  2019cites this paper
• Microbial assemblages and bioindicators as proxies for ecosystem health status: potential and limitations

  2019cites this paper
• Comparison of Cu salts and commercial Cu based fungicides on toxicity towards microorganisms in soil.

  2019cites this paper
• The Use of Biosensors for Biomonitoring Environmental Metal Pollution

  2019cites this paper
• Metagenomic Resolution of Functional Diversity in Copper Surface-Associated Marine Biofilms

  2019cites this paper
• Metal-induced bacterial interactions promote diversity in river-sediment microbiomes.

  2019influential citation
• Factors governing the solid phase distribution of Cr, Cu and As in contaminated soil after 40 years of ageing.

  2019cites this paper
• Contamination of a hospital plumbing system by persister cells of a copper-tolerant high-risk clone of Pseudomonas aeruginosa.

  2019cites this paper
• Effect of long‐term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce

  2019influential citation
• Manure and Doxycycline Affect the Bacterial Community and Its Resistome in Lettuce Rhizosphere and Bulk Soil

  2019cites this paper
• Таксономическое разнообразие бактериального ансамбля в эмбриоземе самозарастающего золоотвала

  2019cites this paper
• Taxonomic diversity of bacterial assemblage in technosol of the revegetating fly ash dump

  2019cites this paper