DSSPcont: continuous secondary structure assignments for proteins

No abstract is available for this paper.

• Publication year

  2003

• Venue

  Nucleic Acids Res.

• Publication date

  2003-07-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1093/NAR/GKG626PMID 12824310PMCID PMC169032
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Secondary structure assignment.

  2003cited by this paper
• Continuum secondary structure captures protein flexibility.

  2002influential reference
• An approach to improving multiple alignments of protein sequences using predicted secondary structure.

  2001cited by this paper
• The Protein Data Bank

  2000cited by this paper
• Protein folds and families: sequence and structure alignments

  1999cited by this paper
• Protein fold recognition by prediction-based threading.

  1997cited by this paper
• Protein fold recognition using sequence‐derived predictions

  1996cited by this paper
• TOPITS: Threading One-Dimensional Predictions Into Three-Dimensional Structures

  1995cited by this paper
• SRS - an indexing and retrieval tool for flat file data libraries

  1993cited by this paper
• Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features

  1983influential reference
• Configurations of Polypeptide Chains With Favored Orientations Around Single Bonds: Two New Pleated Sheets.

  1951cited by this paper
• The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain.

  1951cited by this paper
• Electronic Reprint Biological Crystallography the Protein Data Bank Biological Crystallography the Protein Data Bank

  year unknowninfluential reference

• In-silico Exploration of the Possible Prolactin Pathway Related Targets of B. Monnieri against Triple Negative Breast Cancer: Selection of the Best Target Ligand Combination.

  2026cites this paper
• Stability and Conformational Dynamics of Interferons: Structural Insights into the Urea- and Guanidinium Chloride-Induced Unfolding

  2026cites this paper
• Cheminformatic analysis of protein surfaces provides binding site insights and informs identification strategies

  2025cites this paper
• Residual Graph Convolutional Network for Protein Structure Understanding with Self-Derived Spatial Features

  2025cites this paper
• Multiscale Simulations and Profiling of Human Thymidine Phosphorylase Mutations: Insights into Structural, Dynamics, and Functional Impacts in Mitochondrial Neurogastrointestinal Encephalopathy.

  2025cites this paper
• Dynamic interchange of local residue–residue interactions in the largely extended single alpha-helix in Drebrin

  2025cites this paper
• Abundance of Glycine-mediated O···C=O, N-H···N, and Cα-H···O Interactions in Homo- and Hetero-oligomeric Protein Complexes.

  2025cites this paper
• Synergizing multiresolution simulations, interface redesign, and hotspot mapping to decipher pathogenic mutation-driven structural modulation in VCP

  2025cites this paper
• Baicalein inhibits amyloid beta42 aggregation through disruption of the Asp23-Lys28 salt bridge

  2025cites this paper
• Mechanism of folding and stability of Met80Gly mutant of cytochrome-c

  2024cites this paper
• Integrated computational characterization of valosin-containing protein double-psi β-barrel domain: Insights into structural stability, binding mechanisms, and evolutionary significance.

  2024cites this paper
• dbAMP 3.0: updated resource of antimicrobial activity and structural annotation of peptides in the post-pandemic era

  2024cites this paper
• Computational analysis of physio-chemical properties and phenotypic effects of mutations in SNCA

  2024cites this paper
• On the abundance and importance of AXXXA sequence motifs in globular proteins and their involvement in CβCβ interaction.

  2024cites this paper
• Bebtelovimab‐bound SARS‐CoV‐2 RBD mutants: resistance profiling and validation with escape mutations, clinical results, and viral genome sequences

  2024cites this paper
• Structural and functional analysis of engineered antibodies for cancer immunotherapy: insights into protein compactness and solvent accessibility

  2024cites this paper
• Deciphering the structural insights of the attachment glycoprotein of HeV-g2, a new variant of Henipavirus through homology modeling and molecular dynamics simulation

  2023cites this paper
• Conformational variation of site specific glycated albumin: A Molecular dynamics approach

  2023cites this paper
• Effect of Bacterial Amyloid Protein Phenol−Soluble Modulin Alpha 3 on the Aggregation of Amyloid Beta Protein Associated with Alzheimer’s Disease

  2023influential citation
• RiRPSSP: A unified deep learning method for prediction of regular and irregular protein secondary structures

  2023cites this paper
• Identification of hybrid amyloid strains assembled from amyloid-β and human islet amyloid polypeptide

  2023cites this paper
• Molecular insight into Aspergillus oryzae β-mannanase interacting with mannotriose revealed by molecular dynamic simulation study

  2022influential citation
• Electric Field Effect on Inhibiting the Co-fibrillation of Amyloid Peptides by Modulating the Aggregation Pathway.

  2022cites this paper
• Assigning Secondary Structure in Proteins using AI

  2021cites this paper
• Current Approaches in Supersecondary Structures Investigation

  2021cites this paper
• The hazardous effects of the environmental toxic gases on amyloid beta-peptide aggregation: A theoretical perspective.

  2020cites this paper
• A convenient protein library for spectroscopic calibrations

  2020cites this paper
• In silico studies of the inhibition mechanism of dengue with papain

  2020cites this paper
• Protein Secondary Structure Determination (PSSD): A New and Simple Approach

  2019cites this paper
• SCOT: Rethinking the classification of secondary structure elements

  2019cites this paper
• Local Protein Structures to Bridge Sequence-Structure Knowledge

  2019cites this paper
• Ligand-Binding-Site Structure Shapes Allosteric Signal Transduction and the Evolution of Allostery in Protein Complexes

  2019cites this paper
• C-Terminal sequence is involved in the incorporation of Bgl2p glucanosyltransglycosylase in the cell wall of Saccharomyces cerevisiae

  2018cites this paper
• Dynamic ion pair behavior stabilizes single α-helices in proteins

  2018cites this paper
• Rational Design of Thermostable Carbonic Anhydrase Mutants Using Molecular Dynamics Simulations.

  2018cites this paper
• Detection and characterization at nM concentration of oligomers formed by hIAPP, Aβ(1-40) and their equimolar mixture using SERS and MD simulations.

  2018cites this paper
• Helical Polyampholyte Sequences Have Unique Thermodynamic Properties.

  2018cites this paper
• DYNAMICS OF PROTEIN STRUCTURES AND ITS IMPACT ON LOCAL STRUCTURAL BEHAVIORS.

  2018cites this paper
• An Algorithm for Describing the Convex and Concave Shape of Protein Surface

  2018cites this paper
• Exploring the effect of E76K mutation on SHP2 cause gain‐of‐function activity by a molecular dynamics study

  2018cites this paper
• Dynamic ion pair behavior stabilizes single alpha helices in proteins.

  2018cites this paper
• CoNSEnsX+ Webserver for the Analysis of Protein Structural Ensembles Reflecting Experimentally Determined Internal Dynamics

  2017cites this paper
• Characterization of long and stable de novo single alpha-helix domains provides novel insight into their stability

  2017cites this paper
• Structural Alphabet: From a Local Point of View to a Global Description of Protein 3D Structures

  2017cites this paper
• Recent advances on polyproline II

  2017influential citation
• Methods for a Rapid and Automated Description of Proteins

  2016cites this paper
• Molecular Dynamics: New Frontier in Personalized Medicine.

  2016cites this paper
• RaFoSA: Random forests secondary structure assignment for coarse-grained and all-atom protein systems

  2016cites this paper
• Tuning protein mechanics through an ionic cluster graft from an extremophilic protein.

  2016cites this paper
• Development of a motif‐based topology‐independent structure comparison method to identify evolutionarily related folds

  2016cites this paper
• Differential Effects of Hydrophobic Core Packing Residues for Thermodynamic and Mechanical Stability of a Hyperthermophilic Protein.

  2016cites this paper
• Analysis of secondary structural and physicochemical changes in protein–protein complexes

  2016cites this paper
• A Comparative Study of Methodologies of Protein Secondary Structure

  2015cites this paper
• Computational Prediction of RNA-Binding Proteins and Binding Sites

  2015cites this paper
• Design and practical usage of web biological databases for the annotation and classification of proteins

  2015cites this paper
• An Overview of the Prediction of Protein DNA-Binding Sites

  2015cites this paper
• Thermodynamics and kinetics of amyloid aggregation from atomistic simulations

  2015cites this paper
• Identification of local variations within secondary structures of proteins.

  2015cites this paper
• Effect of external pulling forces on the length distribution of peptides.

  2015cites this paper
• Structural characterization and mutational assessment of podocin — A novel drug target to nephrotic syndrome — An in silico approach

  2014cites this paper
• Protein Secondary Structure Classification Revisited: Processing DSSP Information with PSSC

  2014cites this paper
• Accelerating the Conformational Sampling of Intrinsically Disordered Proteins.

  2014cites this paper
• The conformational ensemble of the β-casein phosphopeptide reveals two independent intrinsically disordered segments.

  2014cites this paper
• A theoretical study of the stability of disulfide bridges in various β-sheet structures of protein segment models

  2014cites this paper
• In silico investigations on HSP90 and its inhibition for the therapeutic prevention of breast cancer

  2013cites this paper
• Pharmacogenomics of drug resistance in Breast Cancer Resistance Protein (BCRP) and its mutated variants

  2013cites this paper
• ArchDB 2014: structural classification of loops in proteins

  2013cites this paper
• Search for identical octapeptides in unrelated proteins: Structural plasticity revisited.

  2012cites this paper
• Predicting protein flexibility through the prediction of local structures

  2011cites this paper
• Structural characterization of CYP165D3, a cytochrome P450 involved in phenolic coupling in teicoplanin biosynthesis.

  2011cites this paper
• The molecular basis of sex: linking yeast to human.

  2011cites this paper
• Disordered Binding of Small Molecules to Aβ(12–28)*

  2011cites this paper
• A Multiscale Approach to Characterize the Early Aggregation Steps of the Amyloid-Forming Peptide GNNQQNY from the Yeast Prion Sup-35

  2011cites this paper
• A novel method for identification of local conformational changes in proteins

  2011influential citation
• Conformational Conversion during Amyloid Formation at Atomic Resolution

  2011influential citation
• Molecular Modelling of Multi-Drug Resistance Transporters

  2011cites this paper
• Characterisation of the streptococcal surface proteins, SEN and GAPDH, and their interaction with host molecules

  2011cites this paper
• Wordom: A User-Friendly Program for the Analysis of Molecular Structures, Trajectories, and Free Energy Surfaces

  2010cites this paper
• Sequence and structural analysis of two designed proteins with 88% identity adopting different folds.

  2010cites this paper
• Structural Characterization of OxyD, a Cytochrome P450 Involved in β-Hydroxytyrosine Formation in Vancomycin Biosynthesis

  2010cites this paper
• Insights into egg coat assembly and egg-sperm interaction from the X-ray structure of full-length ZP3.

  2010cites this paper
• Structural and biochemical characterization of the cytochrome P450 CypX (CYP134A1) from Bacillus subtilis: a cyclo-L-leucyl-L-leucyl dipeptide oxidase.

  2010cites this paper
• Structural features of the Nostoc punctiforme debranching enzyme reveal the basis of its mechanism and substrate specificity

  2010cites this paper
• Iterative Structure-Based Peptide-Like Inhibitor Design against the Botulinum Neurotoxin Serotype A

  2010cites this paper
• An Overview of the De Novo Prediction of Enzyme Catalytic Residues (Supplementry file)

  2009cites this paper
• Hsp70 Chaperones and Type I PRMTs Are Sequestered at Intranuclear Inclusions Caused by Polyalanine Expansions in PABPN1

  2009cites this paper
• An improved prediction of catalytic residues in enzyme structures.

  2008cites this paper
• Characterizing the first steps of amyloid formation for the ccbeta peptide.

  2008cites this paper
• The Functional Interaction of 14-3-3 Proteins with the ERK1/2 Scaffold KSR1 Occurs in an Isoform-specific Manner*

  2008cites this paper
• Characterisation of transition state structures for protein folding using 'high', 'medium' and 'low' {Phi}-values.

  2008cites this paper
• Crystal structure of PAE0151 from Pyrobaculum aerophilum, a PIN‐domain (VapC) protein from a toxin‐antitoxin operon

  2008cites this paper
• Signature of protein adaptation to warm deep sea environments: the case of Initiation Factor 6 studied by molecular simulation and neutron scattering.

  2008cites this paper
• Local Protein Structures

  2007cites this paper
• Building a Disordered Protein Database: A Case Study in Managing Biological Data

  2007influential citation
• Modeling protein loops with knowledge-based prediction of sequence-structure alignment

  2007cites this paper
• Structural alphabet Structural alphabet : from a local point of view to a global description of protein 3 D structures

  2007cites this paper
• A PDZ domain recapitulates a unifying mechanism for protein folding

  2007cites this paper
• Magic-angle spinning solid-state NMR spectroscopy of nanodisc-embedded human CYP3A4.

  2007cites this paper
• Uncovering the topology of configuration space networks.

  2007cites this paper
• Orientation preferences of backbone secondary amide functional groups in peptide nucleic acid complexes: quantum chemical calculations reveal an intrinsic preference of cationic D-amino acid-based chiral PNA analogues for the P-form.

  2007cites this paper