The molecular basis for spectral tuning of rod visual pigments in deep-sea fish.

No abstract is available for this paper.

• Publication year

  2001

• Venue

  Journal of Experimental Biology

• Publication date

  2001-10-01

• Fields of study

  Biology, Medicine

• Identifiers
  PMID 11606607
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Interspecific variation in the visual pigments of deep-sea fishes

  2004cited by this paper
• Crystal Structure of Rhodopsin: A G‐Protein‐Coupled Receptor

  2002cited by this paper
• A novel rod‐like opsin isolated from the extra‐retinal photoreceptors of teleost fish

  2000influential reference
• Highly conserved glutamic acid in the extracellular IV-V loop in rhodopsins acts as the counterion in retinochrome, a member of the rhodopsin family.

  2000cited by this paper
• Crystal structure of rhodopsin: A G protein-coupled receptor.

  2000cited by this paper
• Enhanced retinal longwave sensitivity using a chlorophyll-derived photosensitiser in Malacosteus niger, a deep-sea dragon fish with far red bioluminescence.

  1999cited by this paper
• The evolution of trichromatic color vision by opsin gene duplication in New World and Old World primates.

  1999cited by this paper
• Mutagenesis studies of human red opsin: trp-281 is essential for proper folding and protein-retinal interactions.

  1998cited by this paper
• Molecular evolution of trichromacy in primates.

  1998cited by this paper
• The eyes of deep-sea fish. I: Lens pigmentation, tapeta and visual pigments.

  1998cited by this paper
• Mechanism of spectral tuning in the dolphin visual pigments.

  1998cited by this paper
• Dragon fish see using chlorophyll

  1998cited by this paper
• Mechanisms of wavelength tuning in the rod opsins of deep-sea fishes

  1997influential reference
• Single amino acid residue as a functional determinant of rod and cone visual pigments.

  1997cited by this paper
• An alpha-carbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors.

  1997cited by this paper
• On the visual pigments of deep‐sea fish

  1997cited by this paper
• Mechanisms of spectral tuning in the mouse green cone pigment.

  1997cited by this paper
• Spectral tuning and molecular evolution of rod visual pigments in the species flock of cottoid fish in Lake Baikal.

  1996influential reference
• Light and Photosynthesis in Aquatic Ecosystems

  1995cited by this paper
• Rhodopsin from the fish, Astyanax: role of tyrosine 261 in the red shift.

  1995cited by this paper
• Projection structure of frog rhodopsin in two crystal forms.

  1995cited by this paper
• The occurrence of dopaminergic interplexiform cells correlates with the presence of cones in the retinae of fish

  1995cited by this paper
• Far-red sensitivity of dragon fish

  1995cited by this paper
• The rhodopsin-encoding gene of bony fish lacks introns.

  1995cited by this paper
• Molecular determinants of human red/green color discrimination.

  1994influential reference
• Identification of the Cl(-)-binding site in the human red and green color vision pigments.

  1993cited by this paper
• ROLE OF HYDROXYL‐BEARING AMINO ACIDS IN DIFFERENTIALLY TUNING THE ABSORPTION SPECTRA OF THE HUMAN RED AND GREEN CONE PIGMENTS

  1993cited by this paper
• Cloning and expression of goldfish opsin sequences.

  1993cited by this paper
• The probable arrangement of the helices in G protein‐coupled receptors.

  1993cited by this paper
• Single and multiple visual pigments in deep-sea fishes

  1992cited by this paper
• The polymorphic photopigments of the marmoset: spectral tuning and genetic basis.

  1992cited by this paper
• Spectral tuning of pigments underlying red-green color vision.

  1991cited by this paper
• Mapping of the amino acids in membrane-embedded helices that interact with the retinal chromophore in bovine rhodopsin.

  1991cited by this paper
• Rhodopsin mutants that bind but fail to activate transducin.

  1990cited by this paper
• Determinants of visual pigment absorbance: role of charged amino acids in the putative transmembrane segments.

  1990cited by this paper
• Assembly of functional rhodopsin requires a disulfide bond between cysteine residues 110 and 187.

  1990cited by this paper
• Orientation of retinal in bovine rhodopsin determined by cross-linking using a photoactivatable analog of 11-cis-retinal.

  1990influential reference
• Glutamic acid-113 serves as the retinylidene Schiff base counterion in bovine rhodopsin.

  1989cited by this paper
• The visual pigments of deep-sea fishes: ecophysiology and molecular biology

  1989cited by this paper
• The neighbor-joining method: a new method for reconstructing phylogenetic trees.

  1987influential reference
• The opsin family of proteins.

  1986cited by this paper
• ON THE MECHANISM OF WAVELENGTH REGULATION IN VISUAL PIGMENTS

  1985cited by this paper
• Far Red Bioluminescence from Two Deep-Sea Fishes

  1984cited by this paper
• MARINE BIOLUMINESCENCE SPECTRA MEASURED WITH AN OPTICAL MULTICHANNEL DETECTION SYSTEM.

  1983cited by this paper
• The structure of rhodopsin and the rod outer segment disk membrane

  1983cited by this paper
• The spectral characteristics of luminous marine organisms

  1983cited by this paper
• Observations on the ecology of deep-sea bottom-living fishes collected off northwest Africa (08°–27°N)

  1980cited by this paper
• Developments in deep-sea biology

  1979cited by this paper
• Fishes of the world.

  1978cited by this paper
• Retinas of Fishes: an Atlas

  1978cited by this paper
• Retinal has a highly dipolar vertically excited singlet state: implications for vision.

  1976cited by this paper
• WAVELENGTH REGULATION IN VISUAL PIGMENT CHROMOPHORE: LARGE INDUCED BATHOCHROMIC SHIFTS IN RETINOL AND RELATED POLYENES. *

  1971cited by this paper
• Ocular anatomy of some deep-sea teleosts

  1966cited by this paper
• The grouping of fish visual pigments about preferred positions in the spectrum.

  1965cited by this paper
• The spectral clustering of visual pigments.

  1965cited by this paper
• Photosensitive pigments from the retinae of certain deep‐sea fishes

  1958cited by this paper
• THE MECHANISM OF BLEACHING RHODOPSIN

  1958cited by this paper
• The photosensitive pigments in the retinae of deep-sea fish

  1957cited by this paper
• Visual Pigments of Deep-Sea Fish

  1956cited by this paper

• Largehead hairtail Trichiurus japonicus vision adaptation to dim light conditions

  2025cites this paper
• Widespread and convergent evolution of cone monochromacy in galeomorph sharks.

  2025cites this paper
• An (omics) perspective on the evolution of vision in deep‐sea fishes reveals exceptional adaptations to life in the extreme

  2025cites this paper
• Bioluminescence and environmental light drive the visual evolution of deep-sea shrimp (Oplophoroidea)

  2025cites this paper
• Multiple Pathways of Visual Adaptations for Water Column Usage in an Antarctic Adaptive Radiation

  2025cites this paper
• Short‐wavelength‐sensitive 1 (SWS1) opsin gene duplications and parallel visual pigment tuning support ultraviolet communication in damselfishes (Pomacentridae)

  2024cites this paper
• In-silico predicted mouse melanopsins with blue spectral shifts deliver efficient subcellular signaling

  2024cites this paper
• Deep-sea fish reveal alternative pathway for vertebrate visual development

  2024cites this paper
• Multiple Ecological Axes Drive Molecular Evolution of Cone Opsins in Beloniform Fishes

  2024cites this paper
• Diversity and Evolution of Frog Visual Opsins: Spectral Tuning and Adaptation to Distinct Light Environments

  2024cites this paper
• Adaptation of Antarctic Icefish Vision to Extreme Environments

  2023cites this paper
• Molecular Evolution of Malacostracan Short Wavelength Sensitive Opsins

  2023cites this paper
• An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity

  2022cites this paper
• Evolutionary analyses of visual opsin genes in frogs and toads: Diversity, duplication, and positive selection

  2022cites this paper
• Molecular evolution and depth‐related adaptations of rhodopsin in the adaptive radiation of cichlid fishes in Lake Tanganyika

  2022cites this paper
• Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering

  2022cites this paper
• Ancient whale rhodopsin reconstructs dim-light vision over a major evolutionary transition: Implications for ancestral diving behavior

  2022cites this paper
• The evolutionary history and spectral tuning of vertebrate visual opsins.

  2022cites this paper
• Genetic characterization of the visual pigments of the red-eared turtle (Trachemys scripta elegans) and computational predictions of the spectral sensitivity

  2022cites this paper
• Decoupled spectral tuning and eye size diversification patterns in an Antarctic adaptive radiation

  2022cites this paper
• Evolutionary analyses of visual opsin genes in anurans reveals diversity and positive selection suggestive of functional adaptation to distinct light environments

  2021cites this paper
• Molecular evolution and convergence of the rhodopsin gene in Gymnogobius, a goby group having diverged into coastal to freshwater habitats

  2021influential citation
• Simultaneous Expression of UV and Violet SWS1 Opsins Expands the Visual Palette in a Group of Freshwater Snakes

  2021cites this paper
• Insights into the vision of the hadal snailfish Pseudoliparis swirei through proteomic analysis of the eye

  2021cites this paper
• Accurate Detection of Convergent Mutations in Large Protein Alignments With ConDor

  2021cites this paper
• Not just shades of grey: life is full of colour for the ocellate freshwater river stingray (Potamotrygon motoro).

  2021cites this paper
• Chromosome‐level assembly of southern catfish (silurus meridionalis) provides insights into visual adaptation to nocturnal and benthic lifestyles

  2021cites this paper
• Recreated Ancestral Opsin Associated with Marine to Freshwater Croaker Invasion Reveals Kinetic and Spectral Adaptation

  2021cites this paper
• Non-visual Opsins and Novel Photo-Detectors in the Vertebrate Inner Retina Mediate Light Responses Within the Blue Spectrum Region

  2020cites this paper
• Photoreceptor Diversification Accompanies the Evolution of Anthozoa

  2020cites this paper
• Visual and nonvisual opsin genes of sharks and other nonosteichthyan vertebrates: Genomic exploration of underwater photoreception

  2020cites this paper
• Short-wavelength-sensitive 2 (Sws2) visual photopigment models combined with atomistic molecular simulations to predict spectral peaks of absorbance

  2020cites this paper
• Photoreceptor complexity accompanies adaptation to challenging marine environments in Anthozoa

  2020cites this paper
• Vision in sharks and rays: Opsin diversity and colour vision.

  2020cites this paper
• Seeing the rainbow: mechanisms underlying spectral sensitivity in teleost fishes

  2020cites this paper
• Retinal topography and spectral sensitivity of the Port Jackson shark (Heterodontus portusjacksoni)

  2020cites this paper
• Visual Gene Expression Reveals a cone-to-rod Developmental Progression in Deep-Sea Fishes

  2020cites this paper
• Ontogenetic expression rhythms of visual opsins in senegalese sole are modulated by photoperiod and light spectrum

  2020cites this paper
• Visual pigments, ocular filters and the evolution of snake

  2020cites this paper
• Rapid adaptive of colour vision in the threespine stickleback radiation.

  2020cites this paper
• Visual adaptation of opsin genes to the aquatic environment in sea snakes

  2020cites this paper
• Visual opsin diversity in sharks and rays.

  2019cites this paper
• Convergent Evolution of Mitochondrial Genes in Deep-Sea Fishes

  2019cites this paper
• On the Nature of the Transparent Teeth of the Deep-Sea Dragonfish, Aristostomias scintillans

  2019cites this paper
• The Evolution of Amphibian Photoreception

  2019cites this paper
• Cardinalfishes (Apogonidae) show visual system adaptations typical of nocturnally and diurnally active fish

  2019cites this paper
• Visual pigment evolution in Characiformes: the dynamic interplay of teleost whole-genome duplication, surviving opsins and spectral tuning

  2019cites this paper
• a-ARM: Automatic Rhodopsin Modeling with Chromophore Cavity Generation, Ionization State Selection, and External Counterion Placement.

  2019cites this paper
• Electrostatic Spectral Tuning Maps for Biological Chromophores.

  2019cites this paper
• Photoreceptors morphology and genetics of the visual pigments of Bothrops jararaca and Crotalus durissus terrificus (Serpentes, Viperidae).

  2019cites this paper
• Box A1: Animal Vision

  2019cites this paper
• The retinal pigments of the whale shark (Rhincodon typus) and their role in visual foraging ecology

  2019cites this paper
• Convergent phenotypic evolution of the visual system via different molecular routes: How Neotropical cichlid fishes adapt to novel light environments

  2018cites this paper
• Vision using multiple distinct rod opsins in deep-sea fishes

  2018cites this paper
• Variation in rod spectral sensitivity of fishes is best predicted by habitat and depth.

  2018cites this paper
• Opsin-based photopigments expressed in the retina of a South American pit viper, Bothrops atrox (Viperidae)

  2018cites this paper
• Rhodopsin gene evolution in early teleost fishes

  2018cites this paper
• Opsin gene evolution in amphibious and terrestrial combtooth blennies (Blenniidae)

  2018cites this paper
• Chapter 12 Bioluminescent Fishes and their Eyes

  2018cites this paper
• Clownfishes evolution below and above the species level

  2018cites this paper
• Functional trade-offs and environmental variation shaped ancient trajectories in the evolution of dim-light vision

  2018influential citation
• Parallel opsin switches in multiple cone types of the starry flounder retina: tuning visual pigment composition for a demersal life style

  2018cites this paper
• Convergent selection pressures drive the evolution of rhodopsin kinetics at high altitudes via nonparallel mechanisms

  2018cites this paper
• Functional Shifts in Bat Dim-Light Visual Pigment Are Associated with Differing Echolocation Abilities and Reveal Molecular Adaptation to Photic-Limited Environments

  2018cites this paper
• Short-term colour vision plasticity on the reef: changes in opsin expression under varying light conditions differ between ecologically distinct fish species

  2018cites this paper
• Deep Homology?: Uncanny Similarities of Humans and Flies Uncovered by Evo-Devo

  2017cites this paper
• Overcoming the loss of blue sensitivity through opsin duplication in the largest animal group, beetles

  2017cites this paper
• Daily activity patterns influence retinal morphology, signatures of selection, and spectral tuning of opsin genes in colubrid snakes

  2017cites this paper
• Pushing the limits of photoreception in twilight conditions: The rod-like cone retina of the deep-sea pearlsides

  2017cites this paper
• Evolution of nonspectral rhodopsin function at high altitudes

  2017influential citation
• Accelerated Evolution and Functional Divergence of the DimLight Visual Pigment Accompanies Cichlid Colonization ofCentral America

  2017influential citation
• A second visual rhodopsin gene, rh1-2, is expressed in zebrafish photoreceptors and found in other ray-finned fishes

  2017influential citation
• Loss and gain of cone types in vertebrate ciliary photoreceptor evolution.

  2017cites this paper
• RNA-Seq Transcriptome Analysis of the Cutlass Fish Reveals Photoreceptors Gene Expression in Peripheral Tissues

  2017cites this paper
• Epistatic interactions influence terrestrial–marine functional shifts in cetacean rhodopsin

  2017cites this paper
• The opsin genes of amazonian cichlids

  2017cites this paper
• Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes

  2017influential citation
• Depth‐dependent plasticity in opsin gene expression varies between damselfish (Pomacentridae) species

  2016cites this paper
• Morphological Characterization and Topographic Analysis of Multiple Photoreceptor Types in the Retinae of Mesopelagic Hatchetfishes with Tubular Eyes

  2016cites this paper
• Visual pigments in a palaeognath bird, the emu Dromaius novaehollandiae: implications for spectral sensitivity and the origin of ultraviolet vision

  2016cites this paper
• Sensory Systems: Molecular Evolution in Vertebrates

  2016cites this paper
• Spectral Tuning of Killer Whale (Orcinus orca) Rhodopsin: Evidence for Positive Selection and Functional Adaptation in a Cetacean Visual Pigment.

  2016influential citation
• Detecting the drivers of divergence : identifying and estimating natural selection in threespine stickleback

  2016cites this paper
• Visual Pigments, Ocular Filters and the Evolution of Snake Vision.

  2016cites this paper
• Dim-light photoreceptor of chub mackerel Scomber japonicus and the photoresponse upon illumination with LEDs of different wavelengths

  2016cites this paper
• Rapid adaptive evolution of colour vision in the threespine stickleback radiation

  2016cites this paper
• A comparative study of rhodopsin function in the great bowerbird (Ptilonorhynchus nuchalis): Spectral tuning and light‐activated kinetics

  2016cites this paper
• Adaptations of Photoreceptors and Visual Pigments

  2016cites this paper
• Bioluminescent Fishes and their Eyes

  2016cites this paper
• Elopomorpha (Teleostei) as a New Model Fish Group for Evolutionary Biology and Comparative Genomics

  2015cites this paper
• Spectral Tuning in the Eyes of Deep-Sea Lanternfishes (Myctophidae): A Novel Sexually Dimorphic Intra-Ocular Filter

  2015cites this paper
• Correlated Evolution of Teleost Fish Rhodopsin with Habitat: Linking Molecular Changes to Ecology

  2015cites this paper
• Out of the blue: adaptive visual pigment evolution accompanies Amazon invasion

  2015cites this paper
• Rhodopsin in the Dark Hot Sea: Molecular Analysis of Rhodopsin in a Snailfish, Careproctus rhodomelas, Living near the Deep-Sea Hydrothermal Vent

  2015cites this paper
• Evolutionary Biology: Biodiversification from Genotype to Phenotype

  2015cites this paper
• Ontogenic retinal changes in three ecologically distinct elopomorph fishes (Elopomorpha:Teleostei) correlate with light environment and behavior

  2015cites this paper
• Behavioural syndrome in juvenile eels and its ecological implications

  2015cites this paper
• Lake and Sea Populations of Mysis relicta (Crustacea, Mysida) with Different Visual-Pigment Absorbance Spectra Use the Same A1 Chromophore

  2014cites this paper
• THE COMPLEX EVOLUTIONARY HISTORY OF SEEING RED: MOLECULAR PHYLOGENY AND THE EVOLUTION OF AN ADAPTIVE VISUAL SYSTEM IN DEEP‐SEA DRAGONFISHES (STOMIIFORMES: STOMIIDAE)

  2014cites this paper
• The Evolution of Photoreceptors and Visual Photopigments in Vertebrates

  2014cites this paper